MD08G1011700.v1.1

thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0006511
Physical Location & Seq
Reverse (-)
884185 .. 884669
485 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1011700.v1.1.491

Sequence Viewer

Length: 303 bp
ATGGCTCGATTACCATCATTGTTAATTTCTCTGTTAACCATCCTGGGGCTACAAACATCAGGTGTTGTTTCAAGGACATTCACAATGGAGAACAAGTGCGACTACACAGTGTGGCCGGGCATTCTCACCAACGCCGGGATCTCACCTCTTCCGACCACCGGCTTCGCCCTCGCAAAGGGCGAAACGAAAATTATCTCCGCCCCCTCATCCTGGGGTGGCCGCTTCTGGGGCCGAACCCTCTGCTCCCACGACTCCGCCGGCAAATTCTCCTGCCTCACGCGGACTGTGGCTCAGGAAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

101

Amino Acids

10.71

Weight (kDa)

9.35

Isoelectric Point (pI)

41.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 31 - 94 5.6e-18 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 280
AciI CCGC 4 cut(s) 198, 220, 255, 280
AclWI GGATC 1 cut(s) 146
AcoI YGGCCR 2 cut(s) 113, 217
AcsI RAATTY 1 cut(s) 263
AdeI CACNNNGTG 1 cut(s) 111
AfiI CCNNNNNNNGG 6 cut(s) 45, 135, 158, 175, 210, 226
AgsI TTSAA 1 cut(s) 72
AjnI CCWGG 2 cut(s) 42, 209
AlwI GGATC 1 cut(s) 146
AoxI GGCC 3 cut(s) 113, 217, 229
ApoI RAATTY 1 cut(s) 263
AspS9I GGNCC 1 cut(s) 229
AsuC2I CCSGG 2 cut(s) 117, 136
AsuHPI GGTGA 2 cut(s) 118, 135
BccI CCATC 2 cut(s) 22, 47
BcgI CGANNNNNNTGC 2 cut(s) 222, 256
BciT130I CCWGG 2 cut(s) 44, 211
BcnI CCSGG 2 cut(s) 117, 136
BisI GCNGC 1 cut(s) 220
BlsI GCNGC 1 cut(s) 221
Bme1390I CCNGG 4 cut(s) 44, 117, 136, 211
BmgT120I GGNCC 1 cut(s) 229
BmiI GGNNCC 1 cut(s) 230
BmrFI CCNGG 4 cut(s) 44, 117, 136, 211
Bpu10I CCTNAGC 1 cut(s) 291
BpuMI CCSGG 2 cut(s) 117, 136
BsaBI GATNNNNATC 1 cut(s) 13
BsaJI CCNNGG 2 cut(s) 43, 210
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 6 cut(s) 45, 135, 158, 175, 210, 226
Bse118I RCCGGY 2 cut(s) 158, 257
Bse8I GATNNNNATC 1 cut(s) 13
BseBI CCWGG 2 cut(s) 44, 211
BseDI CCNNGG 2 cut(s) 43, 210
BseGI GGATG 2 cut(s) 39, 206
BseJI GATNNNNATC 1 cut(s) 13
BseLI CCNNNNNNNGG 6 cut(s) 45, 135, 158, 175, 210, 226
Bsh1236I CGCG 1 cut(s) 280
BshFI GGCC 3 cut(s) 115, 219, 231
BsiSI CCGG 4 cut(s) 116, 135, 159, 258
BslI CCNNNNNNNGG 6 cut(s) 45, 135, 158, 175, 210, 226
BsmI GAATGC 1 cut(s) 120
BsnI GGCC 3 cut(s) 115, 219, 231
Bsp143I GATC 1 cut(s) 138
BspACI CCGC 4 cut(s) 198, 220, 255, 280
BspANI GGCC 3 cut(s) 115, 219, 231
BspFNI CGCG 1 cut(s) 280
BspLI GGNNCC 1 cut(s) 230
BspPI GGATC 1 cut(s) 146
BsrFI RCCGGY 2 cut(s) 158, 257
BssAI RCCGGY 2 cut(s) 158, 257
BssECI CCNNGG 2 cut(s) 43, 210
BssMI GATC 1 cut(s) 138
Bst2UI CCWGG 2 cut(s) 44, 211
Bst4CI ACNGT 2 cut(s) 109, 286
Bst6I CTCTTC 1 cut(s) 153
BstC8I GCNNGC 1 cut(s) 259
BstDEI CTNAG 1 cut(s) 291
BstENI CCTNNNNNAGG 1 cut(s) 173
BstF5I GGATG 2 cut(s) 39, 206
BstFNI CGCG 1 cut(s) 280
BstKTI GATC 1 cut(s) 141
BstMBI GATC 1 cut(s) 138
BstMWI GCNNNNNNNGC 1 cut(s) 228
BstNI CCWGG 2 cut(s) 44, 211
BstSCI CCNGG 4 cut(s) 42, 115, 134, 209
BstUI CGCG 1 cut(s) 280
BstX2I RGATCY 1 cut(s) 138
BstYI RGATCY 1 cut(s) 138
BsuRI GGCC 3 cut(s) 115, 219, 231
BtsCI GGATG 2 cut(s) 39, 206
BtsIMutI CAGTG 1 cut(s) 114
Cac8I GCNNGC 1 cut(s) 259
Cfr10I RCCGGY 2 cut(s) 158, 257
Cfr13I GGNCC 1 cut(s) 229
CviJI RGCY 7 cut(s) 5, 49, 115, 162, 219, 231, 290
CviKI_1 RGCY 7 cut(s) 5, 49, 115, 162, 219, 231, 290
DdeI CTNAG 1 cut(s) 291
DpnI GATC 1 cut(s) 140
DpnII GATC 1 cut(s) 138
DraIII CACNNNGTG 1 cut(s) 111
EaeI YGGCCR 2 cut(s) 113, 217
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
EciI GGCGGA 2 cut(s) 187, 244
EcoNI CCTNNNNNAGG 1 cut(s) 173
EcoRII CCWGG 2 cut(s) 42, 209
Fnu4HI GCNGC 1 cut(s) 220
FokI GGATG 2 cut(s) 26, 193
Fsp4HI GCNGC 1 cut(s) 220
GluI GCNGC 1 cut(s) 220
HaeIII GGCC 3 cut(s) 115, 219, 231
HapII CCGG 4 cut(s) 116, 135, 159, 258
HincII GTYRAC 1 cut(s) 36
HindII GTYRAC 1 cut(s) 36
HinfI GANTC 1 cut(s) 251
HpaI GTTAAC 1 cut(s) 36
HpaII CCGG 4 cut(s) 116, 135, 159, 258
HphI GGTGA 2 cut(s) 118, 135
Hpy166II GTNNAC 1 cut(s) 36
Hpy188I TCNGA 1 cut(s) 153
Hpy188III TCNNGA 1 cut(s) 293
Hpy8I GTNNAC 1 cut(s) 36
HpyCH4III ACNGT 2 cut(s) 109, 286
HpyF10VI GCNNNNNNNGC 1 cut(s) 228
HpyF3I CTNAG 1 cut(s) 291
KroI GCCGGC 1 cut(s) 257
KroNI GCCGGC 1 cut(s) 259
KspAI GTTAAC 1 cut(s) 36
Kzo9I GATC 1 cut(s) 138
LmnI GCTCC 1 cut(s) 248
MalI GATC 1 cut(s) 140
MboI GATC 1 cut(s) 138
MboII GAAGA 1 cut(s) 140
MflI RGATCY 1 cut(s) 138
MluCI AATT 4 cut(s) 24, 189, 263, 298
MlyI GAGTC 1 cut(s) 245
MmeI TCCRAC 1 cut(s) 176
MnlI CCTC 5 cut(s) 156, 179, 214, 248, 284
MroNI GCCGGC 1 cut(s) 257
MseI TTAA 2 cut(s) 23, 35
MspI CCGG 4 cut(s) 116, 135, 159, 258
MspR9I CCNGG 4 cut(s) 44, 117, 136, 211
Mva1269I GAATGC 1 cut(s) 120
MvaI CCWGG 2 cut(s) 44, 211
MvnI CGCG 1 cut(s) 280
MwoI GCNNNNNNNGC 1 cut(s) 228
NaeI GCCGGC 1 cut(s) 259
NciI CCSGG 2 cut(s) 117, 136
NdeII GATC 1 cut(s) 138
NgoMIV GCCGGC 1 cut(s) 257
NlaIV GGNNCC 1 cut(s) 230
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PctI GAATGC 1 cut(s) 120
PdiI GCCGGC 1 cut(s) 259
PkrI GCNGC 1 cut(s) 221
PleI GAGTC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 245
Psp6I CCWGG 2 cut(s) 42, 209
PspGI CCWGG 2 cut(s) 42, 209
PspN4I GGNNCC 1 cut(s) 230
PspPI GGNCC 1 cut(s) 229
PsuI RGATCY 1 cut(s) 138
SaqAI TTAA 2 cut(s) 23, 35
SatI GCNGC 1 cut(s) 220
Sau3AI GATC 1 cut(s) 138
Sau96I GGNCC 1 cut(s) 229
SchI GAGTC 1 cut(s) 245
ScrFI CCNGG 4 cut(s) 44, 117, 136, 211
SetI ASST 2 cut(s) 64, 148
Sse9I AATT 4 cut(s) 24, 189, 263, 298
SsiI CCGC 4 cut(s) 198, 220, 255, 280
StyD4I CCNGG 4 cut(s) 42, 115, 134, 209
TaaI ACNGT 2 cut(s) 109, 286
TaqI TCGA 1 cut(s) 7
TasI AATT 4 cut(s) 24, 189, 263, 298
TauI GCSGC 1 cut(s) 222
Tru1I TTAA 2 cut(s) 23, 35
Tru9I TTAA 2 cut(s) 23, 35
TscAI CASTG 1 cut(s) 114
TspRI CASTG 1 cut(s) 114
XagI CCTNNNNNAGG 1 cut(s) 173
XapI RAATTY 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.