FvH4_2g38320

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0006511
Physical Location & Seq
Reverse (-)
27744579 .. 27747672
3094 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g38320.t3

Sequence Viewer

Length: 972 bp
ATGGCTACCTTAACCTTCTCGCTTTCTCTATTCACCCTTCTCGCTCTATTTACATCAGGAGTGTTGTCAACAACATTCACAATGGTAAACAAATGCGAGTACACAGTATGGCCGGGCATTCTCTCCAACGCCGGAGTCCCGCCGCTTCCGACCACCGGCTTCGCTCTCGTAAAAGGCGAGACCAAGACCCTAACCGCCCCCGCCTCCTGGGGAGGCCGCTTCTGGGCCCGAACACTCTGCTCCCACGACTCCACCGGAAAATTCTCCTGCGTCACAGGAGATTGCGGCTCCGGAAAGCTAGAATGTTCCGGAAGCGGCGCCGCACCTCCCGCAACACTCGCCGAGTTCACTTTAGACGGTGACGCCGGCCTTGACTTCTTTGACGTCAGCCTCGTAGACGGTTACAACCTCCCCATGCTGGTGGTTCCCCAGGGCGGGACCGGCACCAACTGTACCAACACCGGCTGCGTGGTCGACCTCAACGGCCTTTGTCCGTCGGAGCTCAAGGTGAGTAGCGTTGATGGAAGCCAAGGCGCCGTCGCGTGCAAGAGCGCGTGCGAGGCGTTTCAGCAGCCGCAGTACTGTTGCAGCGGCGCGTACGCTACACCCGACACTTGCAAGCCGTCTTCGTACTCGGAGGTGTTCAAGAAGGCGTGCCCTCAGGCCTACAGTTATGCATATGACGATAAGACCAGCACCTTCACATGTGCCAATGCCGATTACACCATCACCTTCTGTCCCTCCCCTAACACCAGTCAGAAGGCTTCGCAAGGCCAAACCACACAGCCGGCTCAGACCAGCAACTCGCCGGAGATAAACAGCACAATGGTGTATGAAGGCGCCTCTGACGCTGACGGAAGCGTAACATCTTCGTCGTTCACGTCCGTCCACGTGTTCGCATCGCATGCAACTGCCGGTGCGGTCAGCGTCACGGTGGCTGTTTGGCTATTGTGGCAGCACTACCTCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

324

Amino Acids

33.71

Weight (kDa)

4.69

Isoelectric Point (pI)

34.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 3 - 220 9.8e-86 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 387
AccB1I GGYRCC 4 cut(s) 317, 443, 533, 839
AccI GTMKAC 2 cut(s) 396, 474
AccII CGCG 3 cut(s) 542, 554, 596
AccIII TCCGGA 2 cut(s) 290, 308
AcoI YGGCCR 1 cut(s) 110
AcsI RAATTY 1 cut(s) 260
AcvI CACGTG 1 cut(s) 892
AcyI GRCGYC 5 cut(s) 318, 363, 384, 534, 840
AfaI GTAC 5 cut(s) 101, 454, 581, 599, 632
AfiI CCNNNNNNNGG 6 cut(s) 155, 207, 223, 418, 434, 435
AflIII ACRYGT 2 cut(s) 704, 891
AgsI TTSAA 1 cut(s) 646
AjiI CACGTC 1 cut(s) 882
AjnI CCWGG 2 cut(s) 206, 429
AleI CACNNNNGTG 1 cut(s) 827
AluBI AGCT 2 cut(s) 298, 502
AluI AGCT 2 cut(s) 298, 502
Alw21I GWGCWC 1 cut(s) 504
Alw26I GTCTC 1 cut(s) 173
Aor13HI TCCGGA 2 cut(s) 290, 308
AoxI GGCC 7 cut(s) 110, 214, 225, 367, 484, 663, 772
ApaI GGGCCC 1 cut(s) 229
ApeKI GCWGC 4 cut(s) 465, 571, 588, 955
ApoI RAATTY 1 cut(s) 260
AspLEI GCGC 5 cut(s) 320, 536, 554, 596, 842
AspS9I GGNCC 3 cut(s) 225, 226, 438
AsuC2I CCSGG 1 cut(s) 114
AsuHPI GGTGA 4 cut(s) 25, 371, 520, 721
AvaII GGWCC 1 cut(s) 438
AxyI CCTNAGG 1 cut(s) 660
BaeGI GKGCMC 2 cut(s) 229, 659
BanI GGYRCC 4 cut(s) 317, 443, 533, 839
BanII GRGCYC 2 cut(s) 229, 504
BbrPI CACGTG 1 cut(s) 892
BbsI GAAGAC 1 cut(s) 618
Bbv12I GWGCWC 1 cut(s) 504
BbvI GCAGC 4 cut(s) 452, 583, 600, 967
BccI CCATC 2 cut(s) 515, 734
BceAI ACGGC 3 cut(s) 499, 521, 607
BcgI CGANNNNNNTGC 2 cut(s) 219, 253
BciT130I CCWGG 2 cut(s) 208, 431
BcnI CCSGG 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 173
BfaI CTAG 1 cut(s) 299
BfmI CTRYAG 1 cut(s) 667
BfoI RGCGCY 3 cut(s) 321, 537, 843
BmcAI AGTACT 1 cut(s) 581
Bme1390I CCNGG 3 cut(s) 114, 208, 431
Bme18I GGWCC 1 cut(s) 438
BmgBI CACGTC 1 cut(s) 882
BmgT120I GGNCC 3 cut(s) 225, 226, 438
BmiI GGNNCC 8 cut(s) 227, 289, 319, 426, 439, 445, 535, 841
BmrFI CCNGG 3 cut(s) 114, 208, 431
BmsI GCATC 1 cut(s) 908
BpiI GAAGAC 1 cut(s) 618
BpuEI CTTGAG 1 cut(s) 488
BpuMI CCSGG 1 cut(s) 114
BsaAI YACGTR 1 cut(s) 892
BsaHI GRCGYC 5 cut(s) 318, 363, 384, 534, 840
BsaI GGTCTC 1 cut(s) 173
BsaJI CCNNGG 4 cut(s) 207, 429, 430, 529
BsaWI WCCGGW 3 cut(s) 254, 290, 308
Bsc4I CCNNNNNNNGG 6 cut(s) 155, 207, 223, 418, 434, 435
Bse118I RCCGGY 6 cut(s) 155, 365, 440, 461, 787, 914
Bse1I ACTGG 1 cut(s) 753
Bse21I CCTNAGG 1 cut(s) 660
BseAI TCCGGA 2 cut(s) 290, 308
BseBI CCWGG 2 cut(s) 208, 431
BseDI CCNNGG 4 cut(s) 207, 429, 430, 529
BseLI CCNNNNNNNGG 6 cut(s) 155, 207, 223, 418, 434, 435
BseMII CTCAG 2 cut(s) 674, 806
BseNI ACTGG 1 cut(s) 753
BseSI GKGCMC 2 cut(s) 229, 659
BseXI GCAGC 4 cut(s) 452, 583, 600, 967
Bsh1236I CGCG 3 cut(s) 542, 554, 596
BshFI GGCC 7 cut(s) 112, 216, 227, 369, 486, 665, 774
BshNI GGYRCC 4 cut(s) 317, 443, 533, 839
BsiHKAI GWGCWC 1 cut(s) 504
BsiWI CGTACG 1 cut(s) 597
BslFI GGGAC 3 cut(s) 122, 451, 723
BslI CCNNNNNNNGG 6 cut(s) 155, 207, 223, 418, 434, 435
BsmAI GTCTC 1 cut(s) 173
BsmFI GGGAC 3 cut(s) 122, 451, 723
BsmI GAATGC 1 cut(s) 117
BsnI GGCC 7 cut(s) 112, 216, 227, 369, 486, 665, 774
Bso31I GGTCTC 1 cut(s) 173
Bsp120I GGGCCC 1 cut(s) 225
Bsp1286I GDGCHC 3 cut(s) 229, 504, 659
Bsp13I TCCGGA 2 cut(s) 290, 308
BspANI GGCC 7 cut(s) 112, 216, 227, 369, 486, 665, 774
BspCNI CTCAG 2 cut(s) 673, 805
BspEI TCCGGA 2 cut(s) 290, 308
BspFNI CGCG 3 cut(s) 542, 554, 596
BspLI GGNNCC 8 cut(s) 227, 289, 319, 426, 439, 445, 535, 841
BspT107I GGYRCC 4 cut(s) 317, 443, 533, 839
BspTNI GGTCTC 1 cut(s) 173
BsrFI RCCGGY 6 cut(s) 155, 365, 440, 461, 787, 914
BsrI ACTGG 1 cut(s) 753
BssAI RCCGGY 6 cut(s) 155, 365, 440, 461, 787, 914
BssECI CCNNGG 4 cut(s) 207, 429, 430, 529
BssNI GRCGYC 5 cut(s) 318, 363, 384, 534, 840
BssT1I CCWWGG 1 cut(s) 529
Bst2UI CCWGG 2 cut(s) 208, 431
Bst4CI ACNGT 7 cut(s) 106, 359, 401, 452, 584, 671, 934
BstACI GRCGYC 5 cut(s) 318, 363, 384, 534, 840
BstAPI GCANNNNNTGC 1 cut(s) 905
BstBAI YACGTR 1 cut(s) 892
BstC8I GCNNGC 7 cut(s) 367, 544, 556, 620, 655, 789, 906
BstDEI CTNAG 2 cut(s) 660, 792
BstFNI CGCG 3 cut(s) 542, 554, 596
BstH2I RGCGCY 3 cut(s) 321, 537, 843
BstHHI GCGC 5 cut(s) 320, 536, 554, 596, 842
BstMAI GTCTC 1 cut(s) 173
BstMWI GCNNNNNNNGC 7 cut(s) 329, 338, 441, 560, 848, 905, 952
BstNI CCWGG 2 cut(s) 208, 431
BstNSI RCATGY 2 cut(s) 708, 908
BstSCI CCNGG 3 cut(s) 112, 206, 429
BstSFI CTRYAG 1 cut(s) 667
BstSLI GKGCMC 2 cut(s) 229, 659
BstUI CGCG 3 cut(s) 542, 554, 596
BstV1I GCAGC 4 cut(s) 452, 583, 600, 967
BstV2I GAAGAC 1 cut(s) 618
BstXI CCANNNNNNTGG 1 cut(s) 421
Bsu36I CCTNAGG 1 cut(s) 660
BsuRI GGCC 7 cut(s) 112, 216, 227, 369, 486, 665, 774
BtgZI GCGATG 1 cut(s) 885
BtrI CACGTC 1 cut(s) 882
Cac8I GCNNGC 7 cut(s) 367, 544, 556, 620, 655, 789, 906
CfoI GCGC 5 cut(s) 320, 536, 554, 596, 842
Cfr10I RCCGGY 6 cut(s) 155, 365, 440, 461, 787, 914
Cfr13I GGNCC 3 cut(s) 225, 226, 438
CseI GACGC 4 cut(s) 259, 371, 857, 916
Csp6I GTAC 5 cut(s) 100, 453, 580, 598, 631
CviAII CATG 3 cut(s) 415, 705, 905
CviQI GTAC 5 cut(s) 100, 453, 580, 598, 631
DdeI CTNAG 2 cut(s) 660, 792
DinI GGCGCC 3 cut(s) 319, 535, 841
EaeI YGGCCR 1 cut(s) 110
Ecl136II GAGCTC 1 cut(s) 502
Eco130I CCWWGG 1 cut(s) 529
Eco147I AGGCCT 1 cut(s) 665
Eco24I GRGCYC 2 cut(s) 229, 504
Eco31I GGTCTC 1 cut(s) 173
Eco47I GGWCC 1 cut(s) 438
Eco53kI GAGCTC 1 cut(s) 502
Eco72I CACGTG 1 cut(s) 892
Eco81I CCTNAGG 1 cut(s) 660
EcoICRI GAGCTC 1 cut(s) 502
EcoRII CCWGG 2 cut(s) 206, 429
EcoT14I CCWWGG 1 cut(s) 529
EcoT22I ATGCAT 1 cut(s) 679
EcoT38I GRGCYC 2 cut(s) 229, 504
EgeI GGCGCC 3 cut(s) 319, 535, 841
EheI GGCGCC 3 cut(s) 319, 535, 841
ErhI CCWWGG 1 cut(s) 529
FaeI CATG 3 cut(s) 418, 708, 908
FaiI YATR 8 cut(s) 109, 416, 675, 679, 681, 706, 834, 906
FaqI GGGAC 3 cut(s) 122, 451, 723
FatI CATG 3 cut(s) 414, 704, 904
FauI CCCGC 4 cut(s) 147, 208, 337, 428
FauNDI CATATG 1 cut(s) 679
FblI GTMKAC 2 cut(s) 396, 474
FriOI GRGCYC 2 cut(s) 229, 504
FspBI CTAG 1 cut(s) 299
GlaI GCGC 5 cut(s) 319, 535, 553, 595, 841
HaeII RGCGCY 3 cut(s) 321, 537, 843
HaeIII GGCC 7 cut(s) 112, 216, 227, 369, 486, 665, 774
HgaI GACGC 4 cut(s) 259, 371, 857, 916
HhaI GCGC 5 cut(s) 320, 536, 554, 596, 842
Hin1I GRCGYC 5 cut(s) 318, 363, 384, 534, 840
Hin1II CATG 3 cut(s) 418, 708, 908
Hin6I GCGC 5 cut(s) 318, 534, 552, 594, 840
HinP1I GCGC 5 cut(s) 318, 534, 552, 594, 840
HincII GTYRAC 2 cut(s) 69, 475
HindII GTYRAC 2 cut(s) 69, 475
HinfI GANTC 2 cut(s) 135, 248
HphI GGTGA 4 cut(s) 25, 371, 520, 721
Hpy166II GTNNAC 8 cut(s) 69, 88, 102, 348, 397, 475, 879, 889
Hpy188I TCNGA 6 cut(s) 150, 499, 637, 759, 795, 847
Hpy188III TCNNGA 4 cut(s) 57, 291, 309, 646
Hpy8I GTNNAC 8 cut(s) 69, 88, 102, 348, 397, 475, 879, 889
Hpy99I CGWCG 3 cut(s) 499, 542, 877
HpyAV CCTTC 7 cut(s) 25, 47, 643, 709, 742, 754, 830
HpyCH4III ACNGT 7 cut(s) 106, 359, 401, 452, 584, 671, 934
HpyCH4IV ACGT 3 cut(s) 384, 881, 891
HpyCH4V TGCA 5 cut(s) 546, 588, 618, 677, 908
HpyF10VI GCNNNNNNNGC 7 cut(s) 329, 338, 441, 560, 848, 905, 952
HpyF3I CTNAG 2 cut(s) 660, 792
HpySE526I ACGT 3 cut(s) 384, 881, 891
Hsp92I GRCGYC 5 cut(s) 318, 363, 384, 534, 840
Hsp92II CATG 3 cut(s) 418, 708, 908
HspAI GCGC 5 cut(s) 318, 534, 552, 594, 840
KasI GGCGCC 3 cut(s) 317, 533, 839
Kpn2I TCCGGA 2 cut(s) 290, 308
KroI GCCGGC 2 cut(s) 365, 787
KroNI GCCGGC 2 cut(s) 367, 789
LmnI GCTCC 3 cut(s) 245, 293, 499
Lsp1109I GCAGC 4 cut(s) 452, 583, 600, 967
LweI GCATC 1 cut(s) 908
MaeI CTAG 1 cut(s) 299
MaeII ACGT 3 cut(s) 384, 881, 891
MaeIII GTNAC 5 cut(s) 271, 359, 401, 862, 928
MboII GAAGA 3 cut(s) 618, 861, 958
MhlI GDGCHC 3 cut(s) 229, 504, 659
MluCI AATT 1 cut(s) 260
Mly113I GGCGCC 3 cut(s) 318, 534, 840
MlyI GAGTC 2 cut(s) 144, 242
MmeI TCCRAC 3 cut(s) 150, 173, 477
Mph1103I ATGCAT 1 cut(s) 679
MroI TCCGGA 2 cut(s) 290, 308
MroNI GCCGGC 2 cut(s) 365, 787
MseI TTAA 1 cut(s) 11
MslI CAYNNNNRTG 2 cut(s) 419, 827
MspA1I CMGCKG 1 cut(s) 591
MspR9I CCNGG 3 cut(s) 114, 208, 431
Mva1269I GAATGC 1 cut(s) 117
MvaI CCWGG 2 cut(s) 208, 431
MvnI CGCG 3 cut(s) 542, 554, 596
MwoI GCNNNNNNNGC 7 cut(s) 329, 338, 441, 560, 848, 905, 952
NaeI GCCGGC 2 cut(s) 367, 789
NarI GGCGCC 3 cut(s) 318, 534, 840
NciI CCSGG 1 cut(s) 114
NdeI CATATG 1 cut(s) 679
NgoMIV GCCGGC 2 cut(s) 365, 787
NlaIII CATG 3 cut(s) 418, 708, 908
NlaIV GGNNCC 8 cut(s) 227, 289, 319, 426, 439, 445, 535, 841
NmeAIII GCCGAG 1 cut(s) 367
NmuCI GTSAC 3 cut(s) 271, 359, 928
NsiI ATGCAT 1 cut(s) 679
NspI RCATGY 2 cut(s) 708, 908
OliI CACNNNNGTG 1 cut(s) 827
PaeI GCATGC 1 cut(s) 908
PasI CCCWGGG 1 cut(s) 430
PceI AGGCCT 1 cut(s) 665
PciI ACATGT 1 cut(s) 704
PcsI WCGNNNNNNNCGW 4 cut(s) 174, 390, 606, 878
PctI GAATGC 1 cut(s) 117
PdiI GCCGGC 2 cut(s) 367, 789
Pfl23II CGTACG 1 cut(s) 597
PleI GAGTC 2 cut(s) 143, 242
PluTI GGCGCC 3 cut(s) 321, 537, 843
PmaCI CACGTG 1 cut(s) 892
PmlI CACGTG 1 cut(s) 892
PpsI GAGTC 2 cut(s) 143, 242
Ppu21I YACGTR 1 cut(s) 892
PscI ACATGT 1 cut(s) 704
Psp124BI GAGCTC 1 cut(s) 504
Psp6I CCWGG 2 cut(s) 206, 429
PspCI CACGTG 1 cut(s) 892
PspGI CCWGG 2 cut(s) 206, 429
PspLI CGTACG 1 cut(s) 597
PspN4I GGNNCC 8 cut(s) 227, 289, 319, 426, 439, 445, 535, 841
PspOMI GGGCCC 1 cut(s) 225
PspPI GGNCC 3 cut(s) 225, 226, 438
RsaI GTAC 5 cut(s) 101, 454, 581, 599, 632
RsaNI GTAC 5 cut(s) 100, 453, 580, 598, 631
RseI CAYNNNNRTG 2 cut(s) 419, 827
SacI GAGCTC 1 cut(s) 504
SalI GTCGAC 1 cut(s) 473
SaqAI TTAA 1 cut(s) 11
Sau96I GGNCC 3 cut(s) 225, 226, 438
ScaI AGTACT 1 cut(s) 581
SchI GAGTC 2 cut(s) 144, 242
ScrFI CCNGG 3 cut(s) 114, 208, 431
SduI GDGCHC 3 cut(s) 229, 504, 659
SfaNI GCATC 1 cut(s) 908
SfcI CTRYAG 1 cut(s) 667
SfoI GGCGCC 3 cut(s) 319, 535, 841
SinI GGWCC 1 cut(s) 438
SmiMI CAYNNNNRTG 2 cut(s) 419, 827
SmlI CTYRAG 1 cut(s) 503
SmoI CTYRAG 1 cut(s) 503
SphI GCATGC 1 cut(s) 908
Sse9I AATT 1 cut(s) 260
SseBI AGGCCT 1 cut(s) 665
SspDI GGCGCC 3 cut(s) 317, 533, 839
SspMI CTAG 1 cut(s) 299
SstI GAGCTC 1 cut(s) 504
StuI AGGCCT 1 cut(s) 665
StyD4I CCNGG 3 cut(s) 112, 206, 429
StyI CCWWGG 1 cut(s) 529
TaaI ACNGT 7 cut(s) 106, 359, 401, 452, 584, 671, 934
TaiI ACGT 3 cut(s) 387, 884, 894
TaqI TCGA 1 cut(s) 474
TasI AATT 1 cut(s) 260
TatI WGTACW 2 cut(s) 99, 579
TauI GCSGC 7 cut(s) 145, 219, 288, 318, 323, 577, 594
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TseFI GTSAC 3 cut(s) 271, 359, 928
TseI GCWGC 4 cut(s) 465, 571, 588, 955
Tsp45I GTSAC 3 cut(s) 271, 359, 928
TspDTI ATGAA 1 cut(s) 849
TspGWI ACGGA 3 cut(s) 483, 870, 874
VpaK11BI GGWCC 1 cut(s) 438
XapI RAATTY 1 cut(s) 260
XceI RCATGY 2 cut(s) 708, 908
XmiI GTMKAC 2 cut(s) 396, 474
XspI CTAG 1 cut(s) 299
ZraI GACGTC 1 cut(s) 385
ZrmI AGTACT 1 cut(s) 581
Zsp2I ATGCAT 1 cut(s) 679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.