pycom15g00980

thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0006511
Physical Location & Seq
Reverse (-)
526114 .. 529122
3009 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g00980.2

Sequence Viewer

Length: 1176 bp
ATGTTGCAGTCTCCTTTTCCTTTATCAATATGGAATGGTAAGACGCAAGCTCTTCCCCCTTTCTTGTATAAATACTCTTCCCTCCCACCTTTTCAGGAAATCTCACACATCCTCTCTTCTCTGCTCTCTGTCTTCTCTCTCCTCTCTCTCTCTGCAAATCCCAGCTTCCATACGAAAACATTCACCTCTGAGTCCATGGCTCGATTACCATCATTATTAGTTTCTCTACTAACCATCCTCGGGCTACTAACATCAGGAGTTGTTTCAAGGACATTCACATTGCAAAACAAGTGCGACTACACAGTGTGGCCGGGCATTCTCTCCAACGCCGGCGTCTCACCTCTTCCGACCACAGGCTTCGCCCTCGCAAAGGGCGAAACGAAAATTATCTCCGCCCCCGCATCCTGGGGTGGCCGCTTCTGGGGCCGAACCCTCTGCTCCCACGACTCCGCCGGCAAATTCTCTTGCCTCACCGGCGATTGCGGCTCTGGAAAACTAGAATGCTCGGGCAGCGGTGCCGCCCCCCCGGCCACTCTCGCTGAGTTCACACTCGACGGCGCCGGCGGCCTCGATTTCTTCGACGTCAGCCTCGTGGACGGGTACAACCTCCCTATGCTGGTGGTCCCCAATGGCGGCACTGGGACCAACTGTACGAACACCGGCTGCGTTGTCGACCTCAACACCCGCTGTCCTTCCGAGCTCAAGGTCACCAACGCCGACGGAGCTGAAGGAGTCGCGTGCAAGAGCGCGTGCGAGGCGTTCGGCCAGCCGCAGTACTGTTGCAGCGGCGAGTACGGTTCACCTGACACTTGCAAGCCATCTAAATACTCTCAGATTTTCAAGAGCGCGTGCCCGCACGCATACAGTTACGCGTACGACGACAAGACCAGCACCTTCACATGTGCCGGTGGCGACTACACCATCACCTTCTGCCCATCGCCCAGCACCAGCCAGAAAGCATCACAGGACAGCACACAGCCGCAGCCTACAGCTACACCGTCAGCAACGCCGACAACCACCTCAACCTCGCCGCAGGAGATAAACAACACGATGGAGTACGAGGGCTCCTACTTCTATCCATCGTCGGCTGCTTCCTTTCACGCATTCGAAACACGTGTGACGAGTGCGGTCGGCGTCGTCGCAGTCATTGGGTTGCTATGGCAGCTCTTGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

392

Amino Acids

41.24

Weight (kDa)

5.38

Isoelectric Point (pI)

47.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 585
AccB1I GGYRCC 2 cut(s) 515, 557
AccI GTMKAC 1 cut(s) 672
AccII CGCG 4 cut(s) 737, 749, 848, 872
AcoI YGGCCR 4 cut(s) 308, 412, 528, 763
AcsI RAATTY 1 cut(s) 458
AcuI CTGAAG 1 cut(s) 747
AcvI CACGTG 1 cut(s) 1115
AcyI GRCGYC 4 cut(s) 333, 558, 582, 1134
AdeI CACNNNGTG 1 cut(s) 306
AfaI GTAC 6 cut(s) 602, 652, 776, 794, 875, 1058
AfiI CCNNNNNNNGG 7 cut(s) 240, 353, 370, 405, 421, 616, 632
AflIII ACRYGT 4 cut(s) 870, 899, 1112, 1114
AgsI TTSAA 2 cut(s) 267, 841
AjnI CCWGG 1 cut(s) 404
AluBI AGCT 6 cut(s) 50, 165, 700, 725, 992, 1165
AluI AGCT 6 cut(s) 50, 165, 700, 725, 992, 1165
Alw21I GWGCWC 1 cut(s) 702
Alw26I GTCTC 2 cut(s) 15, 340
Ama87I CYCGRG 2 cut(s) 239, 505
AoxI GGCC 6 cut(s) 308, 412, 424, 528, 565, 763
ApeKI GCWGC 6 cut(s) 510, 663, 783, 982, 1088, 1162
ApoI RAATTY 1 cut(s) 458
Asp700I GAANNNNTTC 1 cut(s) 179
AspLEI GCGC 3 cut(s) 560, 749, 848
AspS9I GGNCC 3 cut(s) 424, 622, 642
AsuC2I CCSGG 2 cut(s) 312, 527
AsuHPI GGTGA 6 cut(s) 175, 330, 463, 700, 792, 916
AsuII TTCGAA 1 cut(s) 1107
AvaI CYCGRG 2 cut(s) 239, 505
AvaII GGWCC 2 cut(s) 622, 642
BaeGI GKGCMC 1 cut(s) 854
BanI GGYRCC 2 cut(s) 515, 557
BanII GRGCYC 2 cut(s) 702, 1067
BauI CACGAG 1 cut(s) 590
BbrPI CACGTG 1 cut(s) 1115
BbsI GAAGAC 1 cut(s) 124
Bbv12I GWGCWC 1 cut(s) 702
BbvI GCAGC 5 cut(s) 522, 650, 795, 994, 1075
BccI CCATC 7 cut(s) 217, 242, 826, 929, 943, 1045, 1087
BceAI ACGGC 1 cut(s) 571
BcgI CGANNNNNNTGC 2 cut(s) 417, 451
BciT130I CCWGG 1 cut(s) 406
BcnI CCSGG 2 cut(s) 312, 527
BcoDI GTCTC 2 cut(s) 15, 340
BfaI CTAG 1 cut(s) 497
BfmI CTRYAG 1 cut(s) 987
BfoI RGCGCY 1 cut(s) 561
BglI GCCNNNNNGGC 2 cut(s) 474, 527
BmcAI AGTACT 1 cut(s) 776
Bme1390I CCNGG 3 cut(s) 312, 406, 527
Bme18I GGWCC 2 cut(s) 622, 642
BmeT110I CYCGRG 2 cut(s) 239, 505
BmgT120I GGNCC 3 cut(s) 424, 622, 642
BmiI GGNNCC 6 cut(s) 425, 517, 559, 624, 643, 1066
BmrFI CCNGG 3 cut(s) 312, 406, 527
BmrI ACTGGG 1 cut(s) 648
BmsI GCATC 2 cut(s) 410, 968
BmuI ACTGGG 1 cut(s) 648
BpiI GAAGAC 1 cut(s) 124
Bpu14I TTCGAA 1 cut(s) 1107
BpuEI CTTGAG 1 cut(s) 686
BpuMI CCSGG 2 cut(s) 312, 527
BsaAI YACGTR 1 cut(s) 1115
BsaBI GATNNNNATC 1 cut(s) 208
BsaHI GRCGYC 4 cut(s) 333, 558, 582, 1134
BsaJI CCNNGG 4 cut(s) 195, 238, 405, 525
BsaXI ACNNNNNCTCC 2 cut(s) 1049, 1079
Bsc4I CCNNNNNNNGG 7 cut(s) 240, 353, 370, 405, 421, 616, 632
Bse118I RCCGGY 6 cut(s) 329, 452, 473, 560, 659, 905
Bse1I ACTGG 1 cut(s) 643
Bse3DI GCAATG 1 cut(s) 278
Bse8I GATNNNNATC 1 cut(s) 208
BseBI CCWGG 1 cut(s) 406
BseDI CCNNGG 4 cut(s) 195, 238, 405, 525
BseGI GGATG 3 cut(s) 108, 234, 401
BseJI GATNNNNATC 1 cut(s) 208
BseLI CCNNNNNNNGG 7 cut(s) 240, 353, 370, 405, 421, 616, 632
BseMI GCAATG 1 cut(s) 278
BseMII CTCAG 3 cut(s) 180, 531, 845
BseNI ACTGG 1 cut(s) 643
BseRI GAGGAG 1 cut(s) 131
BseSI GKGCMC 1 cut(s) 854
BseXI GCAGC 5 cut(s) 522, 650, 795, 994, 1075
BseYI CCCAGC 2 cut(s) 161, 941
Bsh1236I CGCG 4 cut(s) 737, 749, 848, 872
Bsh1285I CGRYCG 1 cut(s) 1131
BshFI GGCC 6 cut(s) 310, 414, 426, 530, 567, 765
BshNI GGYRCC 2 cut(s) 515, 557
BsiEI CGRYCG 1 cut(s) 1131
BsiHKAI GWGCWC 1 cut(s) 702
BsiHKCI CYCGRG 2 cut(s) 239, 505
BsiSI CCGG 8 cut(s) 311, 330, 453, 474, 527, 561, 660, 906
BsiWI CGTACG 1 cut(s) 873
BslFI GGGAC 2 cut(s) 608, 655
BslI CCNNNNNNNGG 7 cut(s) 240, 353, 370, 405, 421, 616, 632
BsmAI GTCTC 2 cut(s) 15, 340
BsmBI CGTCTC 1 cut(s) 340
BsmFI GGGAC 2 cut(s) 608, 655
BsmI GAATGC 3 cut(s) 315, 506, 1103
BsnI GGCC 6 cut(s) 310, 414, 426, 530, 567, 765
BsoBI CYCGRG 2 cut(s) 239, 505
Bsp119I TTCGAA 1 cut(s) 1107
Bsp1286I GDGCHC 3 cut(s) 702, 854, 1067
Bsp19I CCATGG 1 cut(s) 195
BspANI GGCC 6 cut(s) 310, 414, 426, 530, 567, 765
BspCNI CTCAG 3 cut(s) 181, 532, 844
BspFNI CGCG 4 cut(s) 737, 749, 848, 872
BspLI GGNNCC 6 cut(s) 425, 517, 559, 624, 643, 1066
BspQI GCTCTTC 1 cut(s) 57
BspT104I TTCGAA 1 cut(s) 1107
BspT107I GGYRCC 2 cut(s) 515, 557
BsrDI GCAATG 1 cut(s) 278
BsrFI RCCGGY 6 cut(s) 329, 452, 473, 560, 659, 905
BsrI ACTGG 1 cut(s) 643
BssAI RCCGGY 6 cut(s) 329, 452, 473, 560, 659, 905
BssECI CCNNGG 4 cut(s) 195, 238, 405, 525
BssNI GRCGYC 4 cut(s) 333, 558, 582, 1134
BssSI CACGAG 1 cut(s) 590
BssT1I CCWWGG 1 cut(s) 195
Bst2BI CACGAG 1 cut(s) 590
Bst2UI CCWGG 1 cut(s) 406
Bst4CI ACNGT 6 cut(s) 304, 650, 779, 797, 866, 999
Bst6I CTCTTC 4 cut(s) 57, 82, 121, 348
BstACI GRCGYC 4 cut(s) 333, 558, 582, 1134
BstBAI YACGTR 1 cut(s) 1115
BstBI TTCGAA 1 cut(s) 1107
BstDEI CTNAG 3 cut(s) 189, 540, 831
BstDSI CCRYGG 1 cut(s) 195
BstEII GGTNACC 1 cut(s) 706
BstENI CCTNNNNNAGG 1 cut(s) 368
BstF5I GGATG 3 cut(s) 108, 234, 401
BstFNI CGCG 4 cut(s) 737, 749, 848, 872
BstH2I RGCGCY 1 cut(s) 561
BstHHI GCGC 3 cut(s) 560, 749, 848
BstMAI GTCTC 2 cut(s) 15, 340
BstMCI CGRYCG 1 cut(s) 1131
BstNI CCWGG 1 cut(s) 406
BstNSI RCATGY 1 cut(s) 903
BstPI GGTNACC 1 cut(s) 706
BstSCI CCNGG 3 cut(s) 310, 404, 525
BstSFI CTRYAG 1 cut(s) 987
BstSLI GKGCMC 1 cut(s) 854
BstUI CGCG 4 cut(s) 737, 749, 848, 872
BstV1I GCAGC 5 cut(s) 522, 650, 795, 994, 1075
BstV2I GAAGAC 1 cut(s) 124
BsuRI GGCC 6 cut(s) 310, 414, 426, 530, 567, 765
BtgI CCRYGG 1 cut(s) 195
BtgZI GCGATG 1 cut(s) 921
BtsCI GGATG 3 cut(s) 108, 234, 401
BtsIMutI CAGTG 2 cut(s) 309, 636
CfoI GCGC 3 cut(s) 560, 749, 848
Cfr10I RCCGGY 6 cut(s) 329, 452, 473, 560, 659, 905
Cfr13I GGNCC 3 cut(s) 424, 622, 642
CseI GACGC 3 cut(s) 52, 322, 1123
Csp6I GTAC 6 cut(s) 601, 651, 775, 793, 874, 1057
CviAII CATG 2 cut(s) 196, 900
CviQI GTAC 6 cut(s) 601, 651, 775, 793, 874, 1057
DdeI CTNAG 3 cut(s) 189, 540, 831
DinI GGCGCC 1 cut(s) 559
DraIII CACNNNGTG 1 cut(s) 306
EaeI YGGCCR 4 cut(s) 308, 412, 528, 763
Eam1104I CTCTTC 4 cut(s) 57, 82, 121, 348
EarI CTCTTC 4 cut(s) 57, 82, 121, 348
EciI GGCGGA 2 cut(s) 382, 439
Ecl136II GAGCTC 1 cut(s) 700
Eco130I CCWWGG 1 cut(s) 195
Eco24I GRGCYC 2 cut(s) 702, 1067
Eco47I GGWCC 2 cut(s) 622, 642
Eco53kI GAGCTC 1 cut(s) 700
Eco57I CTGAAG 1 cut(s) 747
Eco72I CACGTG 1 cut(s) 1115
Eco88I CYCGRG 2 cut(s) 239, 505
Eco91I GGTNACC 1 cut(s) 706
EcoICRI GAGCTC 1 cut(s) 700
EcoNI CCTNNNNNAGG 1 cut(s) 368
EcoO65I GGTNACC 1 cut(s) 706
EcoRII CCWGG 1 cut(s) 404
EcoT14I CCWWGG 1 cut(s) 195
EcoT38I GRGCYC 2 cut(s) 702, 1067
EgeI GGCGCC 1 cut(s) 559
EheI GGCGCC 1 cut(s) 559
ErhI CCWWGG 1 cut(s) 195
Esp3I CGTCTC 1 cut(s) 340
FaeI CATG 2 cut(s) 199, 903
FaiI YATR 8 cut(s) 31, 69, 171, 197, 614, 862, 901, 1159
FaqI GGGAC 2 cut(s) 608, 655
FatI CATG 2 cut(s) 195, 899
FauI CCCGC 3 cut(s) 406, 692, 861
FblI GTMKAC 1 cut(s) 672
FokI GGATG 3 cut(s) 95, 221, 388
FriOI GRGCYC 2 cut(s) 702, 1067
FspBI CTAG 1 cut(s) 497
GlaI GCGC 3 cut(s) 559, 748, 847
GsaI CCCAGC 2 cut(s) 165, 945
HaeII RGCGCY 1 cut(s) 561
HaeIII GGCC 6 cut(s) 310, 414, 426, 530, 567, 765
HapII CCGG 8 cut(s) 311, 330, 453, 474, 527, 561, 660, 906
HgaI GACGC 3 cut(s) 52, 322, 1123
HhaI GCGC 3 cut(s) 560, 749, 848
Hin1I GRCGYC 4 cut(s) 333, 558, 582, 1134
Hin1II CATG 2 cut(s) 199, 903
Hin6I GCGC 3 cut(s) 558, 747, 846
HinP1I GCGC 3 cut(s) 558, 747, 846
HincII GTYRAC 1 cut(s) 673
HindII GTYRAC 1 cut(s) 673
HinfI GANTC 3 cut(s) 191, 446, 732
HpaII CCGG 8 cut(s) 311, 330, 453, 474, 527, 561, 660, 906
HphI GGTGA 6 cut(s) 175, 330, 463, 700, 792, 916
Hpy166II GTNNAC 4 cut(s) 546, 595, 673, 800
Hpy188I TCNGA 4 cut(s) 190, 348, 697, 834
Hpy188III TCNNGA 4 cut(s) 95, 255, 489, 841
Hpy8I GTNNAC 4 cut(s) 546, 595, 673, 800
Hpy99I CGWCG 7 cut(s) 557, 584, 722, 881, 1087, 1139, 1142
HpyAV CCTTC 4 cut(s) 702, 722, 904, 937
HpyCH4III ACNGT 6 cut(s) 304, 650, 779, 797, 866, 999
HpyCH4IV ACGT 2 cut(s) 582, 1114
HpyCH4V TGCA 6 cut(s) 7, 155, 283, 741, 783, 813
HpyF3I CTNAG 3 cut(s) 189, 540, 831
HpySE526I ACGT 2 cut(s) 582, 1114
Hsp92I GRCGYC 4 cut(s) 333, 558, 582, 1134
Hsp92II CATG 2 cut(s) 199, 903
HspAI GCGC 3 cut(s) 558, 747, 846
KasI GGCGCC 1 cut(s) 557
KroI GCCGGC 3 cut(s) 329, 452, 560
KroNI GCCGGC 3 cut(s) 331, 454, 562
LguI GCTCTTC 1 cut(s) 57
LmnI GCTCC 3 cut(s) 443, 722, 1070
Lsp1109I GCAGC 5 cut(s) 522, 650, 795, 994, 1075
LweI GCATC 2 cut(s) 410, 968
MaeI CTAG 1 cut(s) 497
MaeII ACGT 2 cut(s) 582, 1114
MaeIII GTNAC 3 cut(s) 706, 866, 1117
MboII GAAGA 6 cut(s) 44, 69, 108, 124, 335, 568
MhlI GDGCHC 3 cut(s) 702, 854, 1067
MluCI AATT 2 cut(s) 384, 458
MluI ACGCGT 1 cut(s) 870
Mly113I GGCGCC 1 cut(s) 558
MlyI GAGTC 3 cut(s) 200, 440, 741
MmeI TCCRAC 2 cut(s) 348, 371
MreI CGCCGGCG 2 cut(s) 329, 560
MroNI GCCGGC 3 cut(s) 329, 452, 560
MroXI GAANNNNTTC 1 cut(s) 179
MspA1I CMGCKG 3 cut(s) 513, 687, 786
MspI CCGG 8 cut(s) 311, 330, 453, 474, 527, 561, 660, 906
MspR9I CCNGG 3 cut(s) 312, 406, 527
Mva1269I GAATGC 3 cut(s) 315, 506, 1103
MvaI CCWGG 1 cut(s) 406
MvnI CGCG 4 cut(s) 737, 749, 848, 872
NaeI GCCGGC 3 cut(s) 331, 454, 562
NarI GGCGCC 1 cut(s) 558
NciI CCSGG 2 cut(s) 312, 527
NcoI CCATGG 1 cut(s) 195
NgoMIV GCCGGC 3 cut(s) 329, 452, 560
NlaIII CATG 2 cut(s) 199, 903
NlaIV GGNNCC 6 cut(s) 425, 517, 559, 624, 643, 1066
NmuCI GTSAC 2 cut(s) 706, 1117
NspI RCATGY 1 cut(s) 903
NspV TTCGAA 1 cut(s) 1107
PciI ACATGT 1 cut(s) 899
PciSI GCTCTTC 1 cut(s) 57
PcsI WCGNNNNNNNCGW 4 cut(s) 372, 576, 588, 876
PctI GAATGC 3 cut(s) 315, 506, 1103
PdiI GCCGGC 3 cut(s) 331, 454, 562
PdmI GAANNNNTTC 1 cut(s) 179
Pfl23II CGTACG 1 cut(s) 873
PleI GAGTC 3 cut(s) 199, 440, 740
PluTI GGCGCC 1 cut(s) 561
PmaCI CACGTG 1 cut(s) 1115
PmlI CACGTG 1 cut(s) 1115
PpsI GAGTC 3 cut(s) 199, 440, 740
Ppu21I YACGTR 1 cut(s) 1115
PscI ACATGT 1 cut(s) 899
Psp124BI GAGCTC 1 cut(s) 702
Psp6I CCWGG 1 cut(s) 404
PspCI CACGTG 1 cut(s) 1115
PspEI GGTNACC 1 cut(s) 706
PspFI CCCAGC 2 cut(s) 161, 941
PspGI CCWGG 1 cut(s) 404
PspLI CGTACG 1 cut(s) 873
PspN4I GGNNCC 6 cut(s) 425, 517, 559, 624, 643, 1066
PspPI GGNCC 3 cut(s) 424, 622, 642
RsaI GTAC 6 cut(s) 602, 652, 776, 794, 875, 1058
RsaNI GTAC 6 cut(s) 601, 651, 775, 793, 874, 1057
SacI GAGCTC 1 cut(s) 702
SalI GTCGAC 1 cut(s) 671
SapI GCTCTTC 1 cut(s) 57
Sau96I GGNCC 3 cut(s) 424, 622, 642
ScaI AGTACT 1 cut(s) 776
SchI GAGTC 3 cut(s) 200, 440, 741
ScrFI CCNGG 3 cut(s) 312, 406, 527
SduI GDGCHC 3 cut(s) 702, 854, 1067
SfaNI GCATC 2 cut(s) 410, 968
SfcI CTRYAG 1 cut(s) 987
SfoI GGCGCC 1 cut(s) 559
SfuI TTCGAA 1 cut(s) 1107
SgrAI CRCCGGYG 3 cut(s) 329, 473, 560
SinI GGWCC 2 cut(s) 622, 642
SmlI CTYRAG 1 cut(s) 701
SmoI CTYRAG 1 cut(s) 701
Sse9I AATT 2 cut(s) 384, 458
SspDI GGCGCC 1 cut(s) 557
SspMI CTAG 1 cut(s) 497
SstI GAGCTC 1 cut(s) 702
StyD4I CCNGG 3 cut(s) 310, 404, 525
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 6 cut(s) 304, 650, 779, 797, 866, 999
TaiI ACGT 2 cut(s) 585, 1117
TaqI TCGA 6 cut(s) 202, 552, 570, 579, 672, 1107
TasI AATT 2 cut(s) 384, 458
TatI WGTACW 1 cut(s) 774
TauI GCSGC 9 cut(s) 417, 486, 521, 567, 636, 772, 789, 982, 1033
TscAI CASTG 2 cut(s) 309, 643
TseFI GTSAC 2 cut(s) 706, 1117
TseI GCWGC 6 cut(s) 510, 663, 783, 982, 1088, 1162
Tsp45I GTSAC 2 cut(s) 706, 1117
TspGWI ACGGA 1 cut(s) 735
TspRI CASTG 2 cut(s) 309, 643
VpaK11BI GGWCC 2 cut(s) 622, 642
XagI CCTNNNNNAGG 1 cut(s) 368
XapI RAATTY 1 cut(s) 458
XceI RCATGY 1 cut(s) 903
XmiI GTMKAC 1 cut(s) 672
XmnI GAANNNNTTC 1 cut(s) 179
XspI CTAG 1 cut(s) 497
ZraI GACGTC 1 cut(s) 583
ZrmI AGTACT 1 cut(s) 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.