RLG00000011113

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0006511
Physical Location & Seq
Reverse (-)
6909881 .. 6911654
1774 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011113

Sequence Viewer

Length: 963 bp
ATGGCTCCATTAACACCCTTCTCGCTCTCTCTATTAACCCTTCTCGGTCTATTAACGTCAGGAGCGCTGTCAACGACATTCACAATGGTAAACAAATGCGAGTACACAGTGTGGCCGGGCATTCTCTCCAACGCCGGCGTTCCGCCTCTTCCGACCACCGGCTTCGCTCTCCAGAAAGGCGAGACCAAGACCCTAACCGCCCCCGCCTCCTGGGGCGGCCGCTTCTGGGGCCGAACCCTCTGCACCCACGACTCCACCGGAAAATTCTCCTGCGTCACAGGCGATTGCGGCTCCGGAAAGCTAGAATGCTCCGGAAGCGGCGCCGCCCCTCCCGCAACTCTCGCCGAGTTCACCTTAGACGGTGACGGCGGCCTTGACTTCTTCGACGTCAGCCTCGTCGACGGTTACAACCTCCCTATGCTGGTGGTTCCCCAGGGTGGGACCGGCACCAATTGTACCAACACCGGCTGCGTGGTCGACCTCAACGGCGTTTGTCCGTCGGAGCTCAAGGTGACTAGCGCTGACGGAAGCGAAGGCGTCGCGTGCAAGAGCGCGTGCGAGGCGTTCCAGCAGCCGCAGTACTGTTGCAGCGGCGCGTACGCTACACCCGACACGTGCAAGCCTTCTTCGTACTCTCAAATATTCAAGAACGCGTGCCCTCACGCGTACAGTTACGCATACGACGATAAGACCAGCACCTTCACATGCGCCAATGCCGATTACACCATCACCTTCTGTCCCTCTCCGAACACCAGTCAGAAAGCTTCACAAGGGCAAACCACCCAGCCGGCTCAGACCAGCAACTCGCCGGAGATAAATAGTACAATGGTGTATGAAGGCTCCGATGACGGAAGCGAAGCATGGTCGTCGTCCACGTCCGTCCACGTGTTCTCATCACATGCAACCACGGCAGCCGTCAGCGTCACGGTGGCTGTTTGGCAGTTGTGGCAGCACCTCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

321

Amino Acids

33.42

Weight (kDa)

4.63

Isoelectric Point (pI)

37.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 31 - 247 8.7e-87 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 390
AccB1I GGYRCC 2 cut(s) 320, 446
AccI GTMKAC 2 cut(s) 399, 477
AccII CGCG 5 cut(s) 542, 554, 596, 653, 665
AccIII TCCGGA 2 cut(s) 293, 311
AcoI YGGCCR 2 cut(s) 113, 217
AcsI RAATTY 1 cut(s) 263
AcvI CACGTG 2 cut(s) 615, 886
AcyI GRCGYC 3 cut(s) 321, 387, 537
AdeI CACNNNGTG 1 cut(s) 111
AfaI GTAC 7 cut(s) 104, 457, 581, 599, 632, 668, 823
AfeI AGCGCT 2 cut(s) 66, 520
AfiI CCNNNNNNNGG 6 cut(s) 158, 210, 226, 421, 437, 438
AflIII ACRYGT 4 cut(s) 612, 651, 663, 885
AgsI TTSAA 1 cut(s) 646
AjiI CACGTC 1 cut(s) 876
AjnI CCWGG 2 cut(s) 209, 432
AluBI AGCT 3 cut(s) 301, 505, 764
AluI AGCT 3 cut(s) 301, 505, 764
Alw21I GWGCWC 1 cut(s) 507
Alw26I GTCTC 1 cut(s) 176
Aor13HI TCCGGA 2 cut(s) 293, 311
Aor51HI AGCGCT 2 cut(s) 66, 520
AoxI GGCC 4 cut(s) 113, 217, 229, 370
ApeKI GCWGC 5 cut(s) 468, 571, 588, 911, 949
ApoI RAATTY 1 cut(s) 263
AspLEI GCGC 6 cut(s) 67, 323, 521, 554, 596, 710
AspS9I GGNCC 2 cut(s) 229, 441
AsuC2I CCSGG 1 cut(s) 117
AsuHPI GGTGA 4 cut(s) 343, 374, 523, 721
AvaII GGWCC 1 cut(s) 441
BaeGI GKGCMC 1 cut(s) 659
BanI GGYRCC 2 cut(s) 320, 446
BanII GRGCYC 1 cut(s) 507
BbrPI CACGTG 2 cut(s) 615, 886
Bbv12I GWGCWC 1 cut(s) 507
BbvI GCAGC 4 cut(s) 455, 583, 600, 923
BccI CCATC 1 cut(s) 734
BceAI ACGGC 4 cut(s) 382, 502, 899, 924
BcgI CGANNNNNNTGC 4 cut(s) 222, 256, 849, 883
BciT130I CCWGG 2 cut(s) 211, 434
BcnI CCSGG 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 176
BfaI CTAG 2 cut(s) 302, 516
BfoI RGCGCY 3 cut(s) 68, 324, 522
BmcAI AGTACT 1 cut(s) 581
Bme1390I CCNGG 3 cut(s) 117, 211, 434
Bme18I GGWCC 1 cut(s) 441
BmgBI CACGTC 1 cut(s) 876
BmgT120I GGNCC 2 cut(s) 229, 441
BmiI GGNNCC 8 cut(s) 6, 230, 292, 322, 429, 442, 448, 841
BmrFI CCNGG 3 cut(s) 117, 211, 434
BpmI CTGGAG 1 cut(s) 155
BpuEI CTTGAG 1 cut(s) 491
BpuMI CCSGG 1 cut(s) 117
BsaAI YACGTR 2 cut(s) 615, 886
BsaHI GRCGYC 3 cut(s) 321, 387, 537
BsaI GGTCTC 1 cut(s) 176
BsaJI CCNNGG 4 cut(s) 210, 432, 433, 906
BsaWI WCCGGW 3 cut(s) 257, 293, 311
Bsc4I CCNNNNNNNGG 6 cut(s) 158, 210, 226, 421, 437, 438
Bse118I RCCGGY 5 cut(s) 134, 158, 443, 464, 787
Bse1I ACTGG 1 cut(s) 753
BseAI TCCGGA 2 cut(s) 293, 311
BseBI CCWGG 2 cut(s) 211, 434
BseDI CCNNGG 4 cut(s) 210, 432, 433, 906
BseLI CCNNNNNNNGG 6 cut(s) 158, 210, 226, 421, 437, 438
BseMII CTCAG 1 cut(s) 806
BseNI ACTGG 1 cut(s) 753
BseSI GKGCMC 1 cut(s) 659
BseX3I CGGCCG 1 cut(s) 217
BseXI GCAGC 4 cut(s) 455, 583, 600, 923
BseYI CCCAGC 1 cut(s) 783
BsgI GTGCAG 1 cut(s) 226
Bsh1236I CGCG 5 cut(s) 542, 554, 596, 653, 665
Bsh1285I CGRYCG 1 cut(s) 220
BshFI GGCC 4 cut(s) 115, 219, 231, 372
BshNI GGYRCC 2 cut(s) 320, 446
BsiEI CGRYCG 1 cut(s) 220
BsiHKAI GWGCWC 1 cut(s) 507
BsiWI CGTACG 1 cut(s) 597
BslFI GGGAC 2 cut(s) 454, 723
BslI CCNNNNNNNGG 6 cut(s) 158, 210, 226, 421, 437, 438
BsmAI GTCTC 1 cut(s) 176
BsmFI GGGAC 2 cut(s) 454, 723
BsmI GAATGC 2 cut(s) 120, 311
BsnI GGCC 4 cut(s) 115, 219, 231, 372
Bso31I GGTCTC 1 cut(s) 176
Bsp1286I GDGCHC 2 cut(s) 507, 659
Bsp13I TCCGGA 2 cut(s) 293, 311
BspANI GGCC 4 cut(s) 115, 219, 231, 372
BspCNI CTCAG 1 cut(s) 805
BspEI TCCGGA 2 cut(s) 293, 311
BspFNI CGCG 5 cut(s) 542, 554, 596, 653, 665
BspLI GGNNCC 8 cut(s) 6, 230, 292, 322, 429, 442, 448, 841
BspT107I GGYRCC 2 cut(s) 320, 446
BspTNI GGTCTC 1 cut(s) 176
BsrFI RCCGGY 5 cut(s) 134, 158, 443, 464, 787
BsrI ACTGG 1 cut(s) 753
BssAI RCCGGY 5 cut(s) 134, 158, 443, 464, 787
BssECI CCNNGG 4 cut(s) 210, 432, 433, 906
BssNI GRCGYC 3 cut(s) 321, 387, 537
Bst2UI CCWGG 2 cut(s) 211, 434
Bst4CI ACNGT 6 cut(s) 109, 362, 404, 584, 671, 928
Bst6I CTCTTC 1 cut(s) 153
BstACI GRCGYC 3 cut(s) 321, 387, 537
BstBAI YACGTR 2 cut(s) 615, 886
BstC8I GCNNGC 6 cut(s) 136, 544, 556, 620, 655, 789
BstDEI CTNAG 2 cut(s) 355, 792
BstDSI CCRYGG 1 cut(s) 906
BstFNI CGCG 5 cut(s) 542, 554, 596, 653, 665
BstH2I RGCGCY 3 cut(s) 68, 324, 522
BstHHI GCGC 6 cut(s) 67, 323, 521, 554, 596, 710
BstMAI GTCTC 1 cut(s) 176
BstMCI CGRYCG 1 cut(s) 220
BstNI CCWGG 2 cut(s) 211, 434
BstNSI RCATGY 2 cut(s) 708, 902
BstSCI CCNGG 3 cut(s) 115, 209, 432
BstSLI GKGCMC 1 cut(s) 659
BstUI CGCG 5 cut(s) 542, 554, 596, 653, 665
BstV1I GCAGC 4 cut(s) 455, 583, 600, 923
BstZI CGGCCG 1 cut(s) 217
BsuRI GGCC 4 cut(s) 115, 219, 231, 372
BtgI CCRYGG 1 cut(s) 906
BtrI CACGTC 1 cut(s) 876
BtsIMutI CAGTG 1 cut(s) 114
Cac8I GCNNGC 6 cut(s) 136, 544, 556, 620, 655, 789
CciNI GCGGCCGC 1 cut(s) 217
CfoI GCGC 6 cut(s) 67, 323, 521, 554, 596, 710
Cfr10I RCCGGY 5 cut(s) 134, 158, 443, 464, 787
Cfr13I GGNCC 2 cut(s) 229, 441
CseI GACGC 3 cut(s) 262, 526, 910
Csp6I GTAC 7 cut(s) 103, 456, 580, 598, 631, 667, 822
CviAII CATG 3 cut(s) 705, 861, 899
CviQI GTAC 7 cut(s) 103, 456, 580, 598, 631, 667, 822
DdeI CTNAG 2 cut(s) 355, 792
DinI GGCGCC 1 cut(s) 322
DraIII CACNNNGTG 1 cut(s) 111
EaeI YGGCCR 2 cut(s) 113, 217
EagI CGGCCG 1 cut(s) 217
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
EciI GGCGGA 1 cut(s) 132
Ecl136II GAGCTC 1 cut(s) 505
EclXI CGGCCG 1 cut(s) 217
Eco24I GRGCYC 1 cut(s) 507
Eco31I GGTCTC 1 cut(s) 176
Eco47I GGWCC 1 cut(s) 441
Eco47III AGCGCT 2 cut(s) 66, 520
Eco52I CGGCCG 1 cut(s) 217
Eco53kI GAGCTC 1 cut(s) 505
Eco72I CACGTG 2 cut(s) 615, 886
EcoICRI GAGCTC 1 cut(s) 505
EcoRII CCWGG 2 cut(s) 209, 432
EcoT38I GRGCYC 1 cut(s) 507
EgeI GGCGCC 1 cut(s) 322
EheI GGCGCC 1 cut(s) 322
FaeI CATG 3 cut(s) 708, 864, 902
FaiI YATR 6 cut(s) 419, 679, 706, 834, 862, 900
FaqI GGGAC 2 cut(s) 454, 723
FatI CATG 3 cut(s) 704, 860, 898
FauI CCCGC 2 cut(s) 211, 340
FblI GTMKAC 2 cut(s) 399, 477
FriOI GRGCYC 1 cut(s) 507
FspBI CTAG 2 cut(s) 302, 516
GlaI GCGC 6 cut(s) 66, 322, 520, 553, 595, 709
GsaI CCCAGC 1 cut(s) 787
GsuI CTGGAG 1 cut(s) 155
HaeII RGCGCY 3 cut(s) 68, 324, 522
HaeIII GGCC 4 cut(s) 115, 219, 231, 372
HgaI GACGC 3 cut(s) 262, 526, 910
HhaI GCGC 6 cut(s) 67, 323, 521, 554, 596, 710
Hin1I GRCGYC 3 cut(s) 321, 387, 537
Hin1II CATG 3 cut(s) 708, 864, 902
Hin6I GCGC 6 cut(s) 65, 321, 519, 552, 594, 708
HinP1I GCGC 6 cut(s) 65, 321, 519, 552, 594, 708
HincII GTYRAC 3 cut(s) 72, 400, 478
HindII GTYRAC 3 cut(s) 72, 400, 478
HindIII AAGCTT 1 cut(s) 762
HinfI GANTC 1 cut(s) 251
HphI GGTGA 4 cut(s) 343, 374, 523, 721
Hpy166II GTNNAC 8 cut(s) 72, 91, 105, 351, 400, 478, 873, 883
Hpy188I TCNGA 6 cut(s) 153, 502, 747, 759, 795, 844
Hpy188III TCNNGA 5 cut(s) 60, 172, 294, 312, 646
Hpy8I GTNNAC 8 cut(s) 72, 91, 105, 351, 400, 478, 873, 883
Hpy99I CGWCG 7 cut(s) 389, 401, 404, 502, 542, 686, 871
HpyAV CCTTC 7 cut(s) 28, 50, 527, 633, 709, 742, 830
HpyCH4III ACNGT 6 cut(s) 109, 362, 404, 584, 671, 928
HpyCH4IV ACGT 5 cut(s) 56, 387, 614, 875, 885
HpyCH4V TGCA 5 cut(s) 243, 546, 588, 618, 902
HpyF3I CTNAG 2 cut(s) 355, 792
HpySE526I ACGT 5 cut(s) 56, 387, 614, 875, 885
Hsp92I GRCGYC 3 cut(s) 321, 387, 537
Hsp92II CATG 3 cut(s) 708, 864, 902
HspAI GCGC 6 cut(s) 65, 321, 519, 552, 594, 708
KasI GGCGCC 1 cut(s) 320
Kpn2I TCCGGA 2 cut(s) 293, 311
KroI GCCGGC 2 cut(s) 134, 787
KroNI GCCGGC 2 cut(s) 136, 789
LmnI GCTCC 6 cut(s) 10, 62, 296, 314, 502, 845
Lsp1109I GCAGC 4 cut(s) 455, 583, 600, 923
MaeI CTAG 2 cut(s) 302, 516
MaeII ACGT 5 cut(s) 56, 387, 614, 875, 885
MaeIII GTNAC 6 cut(s) 274, 362, 404, 511, 671, 922
MboII GAAGA 4 cut(s) 140, 373, 618, 949
MfeI CAATTG 1 cut(s) 451
MhlI GDGCHC 2 cut(s) 507, 659
MluCI AATT 2 cut(s) 263, 451
MluI ACGCGT 2 cut(s) 651, 663
Mly113I GGCGCC 1 cut(s) 321
MlyI GAGTC 1 cut(s) 245
MmeI TCCRAC 3 cut(s) 153, 176, 480
MreI CGCCGGCG 1 cut(s) 134
MroI TCCGGA 2 cut(s) 293, 311
MroNI GCCGGC 2 cut(s) 134, 787
MseI TTAA 3 cut(s) 11, 35, 53
MspA1I CMGCKG 1 cut(s) 591
MspR9I CCNGG 3 cut(s) 117, 211, 434
MunI CAATTG 1 cut(s) 451
Mva1269I GAATGC 2 cut(s) 120, 311
MvaI CCWGG 2 cut(s) 211, 434
MvnI CGCG 5 cut(s) 542, 554, 596, 653, 665
NaeI GCCGGC 2 cut(s) 136, 789
NarI GGCGCC 1 cut(s) 321
NciI CCSGG 1 cut(s) 117
NgoMIV GCCGGC 2 cut(s) 134, 787
NlaIII CATG 3 cut(s) 708, 864, 902
NlaIV GGNNCC 8 cut(s) 6, 230, 292, 322, 429, 442, 448, 841
NmeAIII GCCGAG 1 cut(s) 370
NmuCI GTSAC 4 cut(s) 274, 362, 511, 922
NotI GCGGCCGC 1 cut(s) 217
NspI RCATGY 2 cut(s) 708, 902
PasI CCCWGGG 1 cut(s) 433
PcsI WCGNNNNNNNCGW 4 cut(s) 393, 606, 681, 872
PctI GAATGC 2 cut(s) 120, 311
PdiI GCCGGC 2 cut(s) 136, 789
Pfl23II CGTACG 1 cut(s) 597
PleI GAGTC 1 cut(s) 245
PluTI GGCGCC 1 cut(s) 324
PmaCI CACGTG 2 cut(s) 615, 886
PmlI CACGTG 2 cut(s) 615, 886
PpsI GAGTC 1 cut(s) 245
Ppu21I YACGTR 2 cut(s) 615, 886
Psp124BI GAGCTC 1 cut(s) 507
Psp6I CCWGG 2 cut(s) 209, 432
PspCI CACGTG 2 cut(s) 615, 886
PspFI CCCAGC 1 cut(s) 783
PspGI CCWGG 2 cut(s) 209, 432
PspLI CGTACG 1 cut(s) 597
PspN4I GGNNCC 8 cut(s) 6, 230, 292, 322, 429, 442, 448, 841
PspPI GGNCC 2 cut(s) 229, 441
RsaI GTAC 7 cut(s) 104, 457, 581, 599, 632, 668, 823
RsaNI GTAC 7 cut(s) 103, 456, 580, 598, 631, 667, 822
SacI GAGCTC 1 cut(s) 507
SalI GTCGAC 2 cut(s) 398, 476
SaqAI TTAA 3 cut(s) 11, 35, 53
Sau96I GGNCC 2 cut(s) 229, 441
ScaI AGTACT 1 cut(s) 581
SchI GAGTC 1 cut(s) 245
ScrFI CCNGG 3 cut(s) 117, 211, 434
SduI GDGCHC 2 cut(s) 507, 659
SfoI GGCGCC 1 cut(s) 322
SgrAI CRCCGGYG 1 cut(s) 134
SgrDI CGTCGACG 1 cut(s) 398
SinI GGWCC 1 cut(s) 441
SmlI CTYRAG 1 cut(s) 506
SmoI CTYRAG 1 cut(s) 506
Sse9I AATT 2 cut(s) 263, 451
SspDI GGCGCC 1 cut(s) 320
SspI AATATT 1 cut(s) 642
SspMI CTAG 2 cut(s) 302, 516
SstI GAGCTC 1 cut(s) 507
StyD4I CCNGG 3 cut(s) 115, 209, 432
TaaI ACNGT 6 cut(s) 109, 362, 404, 584, 671, 928
TaiI ACGT 5 cut(s) 59, 390, 617, 878, 888
TaqI TCGA 3 cut(s) 384, 399, 477
TaqII GACCGA 1 cut(s) 35
TasI AATT 2 cut(s) 263, 451
TatI WGTACW 3 cut(s) 102, 579, 821
TauI GCSGC 8 cut(s) 219, 222, 291, 321, 326, 372, 577, 594
Tru1I TTAA 3 cut(s) 11, 35, 53
Tru9I TTAA 3 cut(s) 11, 35, 53
TscAI CASTG 1 cut(s) 114
TseFI GTSAC 4 cut(s) 274, 362, 511, 922
TseI GCWGC 5 cut(s) 468, 571, 588, 911, 949
Tsp45I GTSAC 4 cut(s) 274, 362, 511, 922
TspDTI ATGAA 1 cut(s) 849
TspGWI ACGGA 4 cut(s) 486, 540, 864, 868
TspRI CASTG 1 cut(s) 114
VpaK11BI GGWCC 1 cut(s) 441
XapI RAATTY 1 cut(s) 263
XceI RCATGY 2 cut(s) 708, 902
XmiI GTMKAC 2 cut(s) 399, 477
XspI CTAG 2 cut(s) 302, 516
ZraI GACGTC 1 cut(s) 388
ZrmI AGTACT 1 cut(s) 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.