Rh6AG432500

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0006511
Physical Location & Seq
Forward (+)
62275185 .. 62278290
3106 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG432500.1

Sequence Viewer

Length: 762 bp
ATGGCTCCTCCATTAACACCCTTCTCGCTCTCTCTATTAACCCTTCTCGGTCTATTAACATCAGGGGCGCTGTCAACGACATTCACAATGGTAAACAAATGCGAGTACACAGTGTGGCCGGGCATTCTCTCCAACGCCGGCATTCCGCCTCTTCCGACCACCGGCTTCGCCCTCCAGAAAAGCGAGACTAAGACCCTAACCGCCCCCGCCTCCTGGGGCGGCCGCTTCTGGGGCCGAACCCTCTGCACCCACGACTCCACCGGAAAATTCTCCTGCGTCACAGGCGATTGCGGCTCCGGAAAGCTAGAATGCTCCGGAAGCGGCGCTGCCCCTCCCGCAACTCTCGCCGAGTTCACCTTAGACGGTGACGGCGGCCTTGACTTCTTTGACGTCAGCCTCGTCGACGGTTACAACCTCCCTATGCTGGTGGTTCCCCAGGGTGGGACCGGCACAAATTGTACCAACACCGGCTGCGTGGTCGACCTTAACGGCGTTTGTCCCTCGGAGCTCAAGGTGACTAGCGCTGCCGGAAGCGAAGGCGTCGCGTGCAAGAGCGCGTGCGAGGCGTTTCAGCAGCCGCAGTACTGTTGCAGCGGCGCGTACGCTACACCCGACACGTGCAAGCCTTCTTCCTACTCGCAAATATTCAAGAACGCGTGCCCTCACGCGTACAGTTACGCATACGACGATAAGACCAGCACCTTCACATGCGCCAATGCCGATTACACCATTACCTTCTGTCCCTCTCCGAACACCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

253

Amino Acids

26.32

Weight (kDa)

4.79

Isoelectric Point (pI)

37.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 32 - 248 2e-86 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 393
AccI GTMKAC 2 cut(s) 402, 480
AccII CGCG 5 cut(s) 545, 557, 599, 656, 668
AccIII TCCGGA 2 cut(s) 296, 314
AcoI YGGCCR 2 cut(s) 116, 220
AcsI RAATTY 1 cut(s) 266
AcvI CACGTG 1 cut(s) 618
AcyI GRCGYC 2 cut(s) 390, 540
AdeI CACNNNGTG 2 cut(s) 114, 759
AfaI GTAC 5 cut(s) 107, 460, 584, 602, 671
AfeI AGCGCT 1 cut(s) 523
AfiI CCNNNNNNNGG 6 cut(s) 161, 213, 229, 424, 440, 441
AflIII ACRYGT 3 cut(s) 615, 654, 666
AgsI TTSAA 1 cut(s) 649
AjnI CCWGG 3 cut(s) 212, 435, 755
AluBI AGCT 2 cut(s) 304, 508
AluI AGCT 2 cut(s) 304, 508
Alw21I GWGCWC 1 cut(s) 510
Alw26I GTCTC 1 cut(s) 179
Aor13HI TCCGGA 2 cut(s) 296, 314
Aor51HI AGCGCT 1 cut(s) 523
AoxI GGCC 4 cut(s) 116, 220, 232, 373
ApeKI GCWGC 5 cut(s) 326, 471, 524, 574, 591
ApoI RAATTY 1 cut(s) 266
AspLEI GCGC 6 cut(s) 70, 326, 524, 557, 599, 713
AspS9I GGNCC 2 cut(s) 232, 444
AsuC2I CCSGG 1 cut(s) 120
AsuHPI GGTGA 3 cut(s) 346, 377, 526
AvaII GGWCC 1 cut(s) 444
BaeGI GKGCMC 1 cut(s) 662
BanII GRGCYC 1 cut(s) 510
BbrPI CACGTG 1 cut(s) 618
Bbv12I GWGCWC 1 cut(s) 510
BbvI GCAGC 5 cut(s) 313, 458, 511, 586, 603
BceAI ACGGC 2 cut(s) 385, 505
BcgI CGANNNNNNTGC 2 cut(s) 225, 259
BciT130I CCWGG 3 cut(s) 214, 437, 757
BcnI CCSGG 1 cut(s) 120
BcoDI GTCTC 1 cut(s) 179
BfaI CTAG 2 cut(s) 305, 519
BfoI RGCGCY 3 cut(s) 71, 327, 525
BmcAI AGTACT 1 cut(s) 584
Bme1390I CCNGG 4 cut(s) 120, 214, 437, 757
Bme18I GGWCC 1 cut(s) 444
BmgT120I GGNCC 2 cut(s) 232, 444
BmiI GGNNCC 5 cut(s) 6, 233, 295, 432, 445
BmrFI CCNGG 4 cut(s) 120, 214, 437, 757
BpmI CTGGAG 1 cut(s) 158
BpuEI CTTGAG 1 cut(s) 494
BpuMI CCSGG 1 cut(s) 120
BsaAI YACGTR 1 cut(s) 618
BsaHI GRCGYC 2 cut(s) 390, 540
BsaJI CCNNGG 4 cut(s) 213, 435, 436, 501
BsaWI WCCGGW 3 cut(s) 260, 296, 314
Bsc4I CCNNNNNNNGG 6 cut(s) 161, 213, 229, 424, 440, 441
Bse118I RCCGGY 4 cut(s) 137, 161, 446, 467
BseAI TCCGGA 2 cut(s) 296, 314
BseBI CCWGG 3 cut(s) 214, 437, 757
BseDI CCNNGG 4 cut(s) 213, 435, 436, 501
BseLI CCNNNNNNNGG 6 cut(s) 161, 213, 229, 424, 440, 441
BseSI GKGCMC 1 cut(s) 662
BseX3I CGGCCG 1 cut(s) 220
BseXI GCAGC 5 cut(s) 313, 458, 511, 586, 603
BsgI GTGCAG 1 cut(s) 229
Bsh1236I CGCG 5 cut(s) 545, 557, 599, 656, 668
Bsh1285I CGRYCG 1 cut(s) 223
BshFI GGCC 4 cut(s) 118, 222, 234, 375
BsiEI CGRYCG 1 cut(s) 223
BsiHKAI GWGCWC 1 cut(s) 510
BsiSI CCGG 9 cut(s) 119, 138, 162, 261, 297, 315, 447, 468, 528
BsiWI CGTACG 1 cut(s) 600
BslFI GGGAC 3 cut(s) 457, 483, 726
BslI CCNNNNNNNGG 6 cut(s) 161, 213, 229, 424, 440, 441
BsmAI GTCTC 1 cut(s) 179
BsmFI GGGAC 3 cut(s) 457, 483, 726
BsmI GAATGC 3 cut(s) 123, 141, 314
BsnI GGCC 4 cut(s) 118, 222, 234, 375
Bsp1286I GDGCHC 2 cut(s) 510, 662
Bsp13I TCCGGA 2 cut(s) 296, 314
BspANI GGCC 4 cut(s) 118, 222, 234, 375
BspEI TCCGGA 2 cut(s) 296, 314
BspFNI CGCG 5 cut(s) 545, 557, 599, 656, 668
BspLI GGNNCC 5 cut(s) 6, 233, 295, 432, 445
BsrFI RCCGGY 4 cut(s) 137, 161, 446, 467
BssAI RCCGGY 4 cut(s) 137, 161, 446, 467
BssECI CCNNGG 4 cut(s) 213, 435, 436, 501
BssNI GRCGYC 2 cut(s) 390, 540
Bst2UI CCWGG 3 cut(s) 214, 437, 757
Bst4CI ACNGT 5 cut(s) 112, 365, 407, 587, 674
Bst6I CTCTTC 1 cut(s) 156
BstACI GRCGYC 2 cut(s) 390, 540
BstBAI YACGTR 1 cut(s) 618
BstC8I GCNNGC 5 cut(s) 139, 547, 559, 623, 658
BstDEI CTNAG 2 cut(s) 189, 358
BstFNI CGCG 5 cut(s) 545, 557, 599, 656, 668
BstH2I RGCGCY 3 cut(s) 71, 327, 525
BstHHI GCGC 6 cut(s) 70, 326, 524, 557, 599, 713
BstMAI GTCTC 1 cut(s) 179
BstMCI CGRYCG 1 cut(s) 223
BstMWI GCNNNNNNNGC 8 cut(s) 231, 282, 291, 318, 335, 344, 546, 563
BstNI CCWGG 3 cut(s) 214, 437, 757
BstNSI RCATGY 1 cut(s) 711
BstSCI CCNGG 4 cut(s) 118, 212, 435, 755
BstSLI GKGCMC 1 cut(s) 662
BstUI CGCG 5 cut(s) 545, 557, 599, 656, 668
BstV1I GCAGC 5 cut(s) 313, 458, 511, 586, 603
BstZI CGGCCG 1 cut(s) 220
BsuRI GGCC 4 cut(s) 118, 222, 234, 375
BtsIMutI CAGTG 1 cut(s) 117
Cac8I GCNNGC 5 cut(s) 139, 547, 559, 623, 658
CciNI GCGGCCGC 1 cut(s) 220
CfoI GCGC 6 cut(s) 70, 326, 524, 557, 599, 713
Cfr10I RCCGGY 4 cut(s) 137, 161, 446, 467
Cfr13I GGNCC 2 cut(s) 232, 444
CseI GACGC 2 cut(s) 265, 529
CsiI ACCWGGT 1 cut(s) 755
Csp6I GTAC 5 cut(s) 106, 459, 583, 601, 670
CviAII CATG 1 cut(s) 708
CviQI GTAC 5 cut(s) 106, 459, 583, 601, 670
DdeI CTNAG 2 cut(s) 189, 358
DraIII CACNNNGTG 2 cut(s) 114, 759
EaeI YGGCCR 2 cut(s) 116, 220
EagI CGGCCG 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
EciI GGCGGA 1 cut(s) 135
Ecl136II GAGCTC 1 cut(s) 508
EclXI CGGCCG 1 cut(s) 220
Eco24I GRGCYC 1 cut(s) 510
Eco47I GGWCC 1 cut(s) 444
Eco47III AGCGCT 1 cut(s) 523
Eco52I CGGCCG 1 cut(s) 220
Eco53kI GAGCTC 1 cut(s) 508
Eco72I CACGTG 1 cut(s) 618
EcoICRI GAGCTC 1 cut(s) 508
EcoRII CCWGG 3 cut(s) 212, 435, 755
EcoT38I GRGCYC 1 cut(s) 510
FaeI CATG 1 cut(s) 711
FaiI YATR 3 cut(s) 422, 682, 709
FaqI GGGAC 3 cut(s) 457, 483, 726
FatI CATG 1 cut(s) 707
FauI CCCGC 2 cut(s) 214, 343
FblI GTMKAC 2 cut(s) 402, 480
FriOI GRGCYC 1 cut(s) 510
FspBI CTAG 2 cut(s) 305, 519
GlaI GCGC 6 cut(s) 69, 325, 523, 556, 598, 712
GsuI CTGGAG 1 cut(s) 158
HaeII RGCGCY 3 cut(s) 71, 327, 525
HaeIII GGCC 4 cut(s) 118, 222, 234, 375
HapII CCGG 9 cut(s) 119, 138, 162, 261, 297, 315, 447, 468, 528
HgaI GACGC 2 cut(s) 265, 529
HhaI GCGC 6 cut(s) 70, 326, 524, 557, 599, 713
Hin1I GRCGYC 2 cut(s) 390, 540
Hin1II CATG 1 cut(s) 711
Hin6I GCGC 6 cut(s) 68, 324, 522, 555, 597, 711
HinP1I GCGC 6 cut(s) 68, 324, 522, 555, 597, 711
HincII GTYRAC 3 cut(s) 75, 403, 481
HindII GTYRAC 3 cut(s) 75, 403, 481
HinfI GANTC 1 cut(s) 254
HpaII CCGG 9 cut(s) 119, 138, 162, 261, 297, 315, 447, 468, 528
HphI GGTGA 3 cut(s) 346, 377, 526
Hpy166II GTNNAC 6 cut(s) 75, 94, 108, 354, 403, 481
Hpy188I TCNGA 3 cut(s) 156, 505, 750
Hpy188III TCNNGA 4 cut(s) 175, 297, 315, 649
Hpy8I GTNNAC 6 cut(s) 75, 94, 108, 354, 403, 481
Hpy99I CGWCG 4 cut(s) 404, 407, 545, 689
HpyAV CCTTC 6 cut(s) 31, 53, 530, 636, 712, 745
HpyCH4III ACNGT 5 cut(s) 112, 365, 407, 587, 674
HpyCH4IV ACGT 2 cut(s) 390, 617
HpyCH4V TGCA 4 cut(s) 246, 549, 591, 621
HpyF10VI GCNNNNNNNGC 8 cut(s) 231, 282, 291, 318, 335, 344, 546, 563
HpyF3I CTNAG 2 cut(s) 189, 358
HpySE526I ACGT 2 cut(s) 390, 617
Hsp92I GRCGYC 2 cut(s) 390, 540
Hsp92II CATG 1 cut(s) 711
HspAI GCGC 6 cut(s) 68, 324, 522, 555, 597, 711
Kpn2I TCCGGA 2 cut(s) 296, 314
KroI GCCGGC 1 cut(s) 137
KroNI GCCGGC 1 cut(s) 139
LmnI GCTCC 4 cut(s) 10, 299, 317, 505
Lsp1109I GCAGC 5 cut(s) 313, 458, 511, 586, 603
MabI ACCWGGT 1 cut(s) 755
MaeI CTAG 2 cut(s) 305, 519
MaeII ACGT 2 cut(s) 390, 617
MaeIII GTNAC 5 cut(s) 277, 365, 407, 514, 674
MboII GAAGA 2 cut(s) 143, 621
MhlI GDGCHC 2 cut(s) 510, 662
MluCI AATT 2 cut(s) 266, 454
MluI ACGCGT 2 cut(s) 654, 666
MlyI GAGTC 1 cut(s) 248
MmeI TCCRAC 2 cut(s) 156, 179
MroI TCCGGA 2 cut(s) 296, 314
MroNI GCCGGC 1 cut(s) 137
MseI TTAA 4 cut(s) 14, 38, 56, 486
MspA1I CMGCKG 1 cut(s) 594
MspI CCGG 9 cut(s) 119, 138, 162, 261, 297, 315, 447, 468, 528
MspR9I CCNGG 4 cut(s) 120, 214, 437, 757
Mva1269I GAATGC 3 cut(s) 123, 141, 314
MvaI CCWGG 3 cut(s) 214, 437, 757
MvnI CGCG 5 cut(s) 545, 557, 599, 656, 668
MwoI GCNNNNNNNGC 8 cut(s) 231, 282, 291, 318, 335, 344, 546, 563
NaeI GCCGGC 1 cut(s) 139
NciI CCSGG 1 cut(s) 120
NgoMIV GCCGGC 1 cut(s) 137
NlaIII CATG 1 cut(s) 711
NlaIV GGNNCC 5 cut(s) 6, 233, 295, 432, 445
NmeAIII GCCGAG 1 cut(s) 373
NmuCI GTSAC 3 cut(s) 277, 365, 514
NotI GCGGCCGC 1 cut(s) 220
NspI RCATGY 1 cut(s) 711
PasI CCCWGGG 1 cut(s) 436
PcsI WCGNNNNNNNCGW 3 cut(s) 396, 609, 684
PctI GAATGC 3 cut(s) 123, 141, 314
PdiI GCCGGC 1 cut(s) 139
Pfl23II CGTACG 1 cut(s) 600
PleI GAGTC 1 cut(s) 248
PmaCI CACGTG 1 cut(s) 618
PmlI CACGTG 1 cut(s) 618
PpsI GAGTC 1 cut(s) 248
Ppu21I YACGTR 1 cut(s) 618
Psp124BI GAGCTC 1 cut(s) 510
Psp6I CCWGG 3 cut(s) 212, 435, 755
PspCI CACGTG 1 cut(s) 618
PspGI CCWGG 3 cut(s) 212, 435, 755
PspLI CGTACG 1 cut(s) 600
PspN4I GGNNCC 5 cut(s) 6, 233, 295, 432, 445
PspPI GGNCC 2 cut(s) 232, 444
RsaI GTAC 5 cut(s) 107, 460, 584, 602, 671
RsaNI GTAC 5 cut(s) 106, 459, 583, 601, 670
SacI GAGCTC 1 cut(s) 510
SalI GTCGAC 2 cut(s) 401, 479
SaqAI TTAA 4 cut(s) 14, 38, 56, 486
Sau96I GGNCC 2 cut(s) 232, 444
ScaI AGTACT 1 cut(s) 584
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 4 cut(s) 120, 214, 437, 757
SduI GDGCHC 2 cut(s) 510, 662
SexAI ACCWGGT 1 cut(s) 755
SgrDI CGTCGACG 1 cut(s) 401
SinI GGWCC 1 cut(s) 444
SmlI CTYRAG 1 cut(s) 509
SmoI CTYRAG 1 cut(s) 509
Sse9I AATT 2 cut(s) 266, 454
SspI AATATT 1 cut(s) 645
SspMI CTAG 2 cut(s) 305, 519
SstI GAGCTC 1 cut(s) 510
StyD4I CCNGG 4 cut(s) 118, 212, 435, 755
TaaI ACNGT 5 cut(s) 112, 365, 407, 587, 674
TaiI ACGT 2 cut(s) 393, 620
TaqI TCGA 2 cut(s) 402, 480
TaqII GACCGA 1 cut(s) 38
TasI AATT 2 cut(s) 266, 454
TatI WGTACW 2 cut(s) 105, 582
TauI GCSGC 7 cut(s) 222, 225, 294, 324, 375, 580, 597
Tru1I TTAA 4 cut(s) 14, 38, 56, 486
Tru9I TTAA 4 cut(s) 14, 38, 56, 486
TscAI CASTG 1 cut(s) 117
TseFI GTSAC 3 cut(s) 277, 365, 514
TseI GCWGC 5 cut(s) 326, 471, 524, 574, 591
Tsp45I GTSAC 3 cut(s) 277, 365, 514
TspRI CASTG 1 cut(s) 117
VpaK11BI GGWCC 1 cut(s) 444
XapI RAATTY 1 cut(s) 266
XceI RCATGY 1 cut(s) 711
XmiI GTMKAC 2 cut(s) 402, 480
XspI CTAG 2 cut(s) 305, 519
ZraI GACGTC 1 cut(s) 391
ZrmI AGTACT 1 cut(s) 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.