RchiOBHm_Chr7g0185921

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0006511
Physical Location & Seq
Forward (+)
5988137 .. 5988799
663 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16596

Sequence Viewer

Length: 663 bp
ATGGTAAACAAATGCGAGTACGCAGTGTGGCCGGGCATTCTCTCCAACCCCGGCGCTCCGCCGTTTCCGACCGCCGGCTTCGCTCTCGAGAAAGATGAGACCATGACCCTAATCGCCCCCGCCTCCTGGAGAGGCCGCTTATGGGGCCGAACCCTCTGCACCCTCGACTCCACCGGAAACTTCTCCTGCGTCACAGGCGATTGCGGCTCCGGAAAGCAAGAATGCTCCGGAAGCGGCGCCGCCACTACCGCAACTCTCGCCGAGTTCAGCTTAGACGGCTTCGGCGGCCTTGACTTCTTTGACATCAGCCTCGTCGACGGTTACAACCTCCCTATGCTGGTGGTTCCCGAGGGTGGGACCGGCACCAGTTGTACCAACACCGGCTGCGTGGTCGACCTTAACAGCGTTTGTCCCTCGGAGCTCAAGGTGACTAGCGGTTCGGGAAGCGAAGTCGTCGGGTGCAAGAGCGCGTGCGAGGCGTTCCAGCAGCCGCAGTACTGTTGCAGCGGCGCAGACAAGTGCAAGCCTTCTTCGTACTCGCAAATATTCAAGAACGCGTGCCCTCAAGCGTACAGTTACGCACTCGACGATGCGACCAGCACCTTCGCATGTGCCAATGCCAATTACACCATCACCTTCTGTCCCTCTCCGAACACCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

220

Amino Acids

22.94

Weight (kDa)

4.43

Isoelectric Point (pI)

41.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 3 - 215 1.4e-77 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 236, 362
AccI GTMKAC 2 cut(s) 315, 393
AccII CGCG 2 cut(s) 470, 557
AccIII TCCGGA 2 cut(s) 209, 227
AcoI YGGCCR 1 cut(s) 29
AcyI GRCGYC 1 cut(s) 237
AfaI GTAC 5 cut(s) 20, 373, 497, 536, 572
AfiI CCNNNNNNNGG 6 cut(s) 74, 126, 142, 337, 353, 354
AflIII ACRYGT 1 cut(s) 555
AgsI TTSAA 1 cut(s) 550
AjnI CCWGG 2 cut(s) 125, 656
AluBI AGCT 2 cut(s) 270, 421
AluI AGCT 2 cut(s) 270, 421
Alw21I GWGCWC 1 cut(s) 423
Alw26I GTCTC 1 cut(s) 92
Ama87I CYCGRG 2 cut(s) 86, 347
Aor13HI TCCGGA 2 cut(s) 209, 227
AoxI GGCC 4 cut(s) 29, 133, 145, 286
ApeKI GCWGC 3 cut(s) 384, 487, 504
ArsI GACNNNNNNTTYG 2 cut(s) 421, 453
AspLEI GCGC 4 cut(s) 56, 239, 470, 512
AspS9I GGNCC 2 cut(s) 145, 357
AsuC2I CCSGG 2 cut(s) 33, 51
AsuHPI GGTGA 2 cut(s) 439, 625
AvaI CYCGRG 2 cut(s) 86, 347
AvaII GGWCC 1 cut(s) 357
BaeGI GKGCMC 1 cut(s) 563
BanI GGYRCC 2 cut(s) 236, 362
BanII GRGCYC 1 cut(s) 423
Bbv12I GWGCWC 1 cut(s) 423
BbvI GCAGC 3 cut(s) 371, 499, 516
BccI CCATC 1 cut(s) 638
BceAI ACGGC 2 cut(s) 46, 292
BcgI CGANNNNNNTGC 2 cut(s) 138, 172
BciT130I CCWGG 2 cut(s) 127, 658
BcnI CCSGG 2 cut(s) 33, 51
BcoDI GTCTC 1 cut(s) 92
BfaI CTAG 1 cut(s) 432
BfoI RGCGCY 2 cut(s) 57, 240
BmcAI AGTACT 1 cut(s) 497
Bme1390I CCNGG 4 cut(s) 33, 51, 127, 658
Bme18I GGWCC 1 cut(s) 357
BmeT110I CYCGRG 2 cut(s) 86, 347
BmgT120I GGNCC 2 cut(s) 145, 357
BmiI GGNNCC 6 cut(s) 146, 208, 238, 345, 358, 364
BmrFI CCNGG 4 cut(s) 33, 51, 127, 658
BmsI GCATC 1 cut(s) 580
BpmI CTGGAG 1 cut(s) 148
BpuEI CTTGAG 2 cut(s) 407, 549
BpuMI CCSGG 2 cut(s) 33, 51
BsaHI GRCGYC 1 cut(s) 237
BsaI GGTCTC 1 cut(s) 92
BsaJI CCNNGG 3 cut(s) 49, 348, 414
BsaWI WCCGGW 3 cut(s) 173, 209, 227
Bsc4I CCNNNNNNNGG 6 cut(s) 74, 126, 142, 337, 353, 354
Bse118I RCCGGY 3 cut(s) 74, 359, 380
Bse1I ACTGG 1 cut(s) 366
BseAI TCCGGA 2 cut(s) 209, 227
BseBI CCWGG 2 cut(s) 127, 658
BseDI CCNNGG 3 cut(s) 49, 348, 414
BseLI CCNNNNNNNGG 6 cut(s) 74, 126, 142, 337, 353, 354
BseNI ACTGG 1 cut(s) 366
BseSI GKGCMC 1 cut(s) 563
BseXI GCAGC 3 cut(s) 371, 499, 516
BsgI GTGCAG 1 cut(s) 142
Bsh1236I CGCG 2 cut(s) 470, 557
Bsh1285I CGRYCG 1 cut(s) 72
BshFI GGCC 4 cut(s) 31, 135, 147, 288
BshNI GGYRCC 2 cut(s) 236, 362
BsiEI CGRYCG 1 cut(s) 72
BsiHKAI GWGCWC 1 cut(s) 423
BsiHKCI CYCGRG 2 cut(s) 86, 347
BsiSI CCGG 8 cut(s) 32, 51, 75, 174, 210, 228, 360, 381
BslFI GGGAC 3 cut(s) 370, 396, 627
BslI CCNNNNNNNGG 6 cut(s) 74, 126, 142, 337, 353, 354
BsmAI GTCTC 1 cut(s) 92
BsmFI GGGAC 3 cut(s) 370, 396, 627
BsmI GAATGC 2 cut(s) 36, 227
BsnI GGCC 4 cut(s) 31, 135, 147, 288
Bso31I GGTCTC 1 cut(s) 92
BsoBI CYCGRG 2 cut(s) 86, 347
Bsp1286I GDGCHC 2 cut(s) 423, 563
Bsp13I TCCGGA 2 cut(s) 209, 227
BspANI GGCC 4 cut(s) 31, 135, 147, 288
BspEI TCCGGA 2 cut(s) 209, 227
BspFNI CGCG 2 cut(s) 470, 557
BspLI GGNNCC 6 cut(s) 146, 208, 238, 345, 358, 364
BspT107I GGYRCC 2 cut(s) 236, 362
BspTNI GGTCTC 1 cut(s) 92
BsrFI RCCGGY 3 cut(s) 74, 359, 380
BsrI ACTGG 1 cut(s) 366
BssAI RCCGGY 3 cut(s) 74, 359, 380
BssECI CCNNGG 3 cut(s) 49, 348, 414
BssNI GRCGYC 1 cut(s) 237
Bst2UI CCWGG 2 cut(s) 127, 658
Bst4CI ACNGT 3 cut(s) 320, 500, 575
BstACI GRCGYC 1 cut(s) 237
BstC8I GCNNGC 4 cut(s) 76, 472, 524, 559
BstDEI CTNAG 1 cut(s) 271
BstFNI CGCG 2 cut(s) 470, 557
BstH2I RGCGCY 2 cut(s) 57, 240
BstHHI GCGC 4 cut(s) 56, 239, 470, 512
BstMAI GTCTC 1 cut(s) 92
BstMCI CGRYCG 1 cut(s) 72
BstNI CCWGG 2 cut(s) 127, 658
BstNSI RCATGY 1 cut(s) 612
BstSCI CCNGG 4 cut(s) 31, 49, 125, 656
BstSLI GKGCMC 1 cut(s) 563
BstUI CGCG 2 cut(s) 470, 557
BstV1I GCAGC 3 cut(s) 371, 499, 516
BsuRI GGCC 4 cut(s) 31, 135, 147, 288
BtsI GCAGTG 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 30
Cac8I GCNNGC 4 cut(s) 76, 472, 524, 559
CfoI GCGC 4 cut(s) 56, 239, 470, 512
Cfr10I RCCGGY 3 cut(s) 74, 359, 380
Cfr13I GGNCC 2 cut(s) 145, 357
CseI GACGC 1 cut(s) 178
CsiI ACCWGGT 1 cut(s) 656
Csp6I GTAC 5 cut(s) 19, 372, 496, 535, 571
CviAII CATG 2 cut(s) 103, 609
CviQI GTAC 5 cut(s) 19, 372, 496, 535, 571
DdeI CTNAG 1 cut(s) 271
DinI GGCGCC 1 cut(s) 238
EaeI YGGCCR 1 cut(s) 29
EciI GGCGGA 1 cut(s) 48
Ecl136II GAGCTC 1 cut(s) 421
Eco24I GRGCYC 1 cut(s) 423
Eco31I GGTCTC 1 cut(s) 92
Eco47I GGWCC 1 cut(s) 357
Eco53kI GAGCTC 1 cut(s) 421
Eco88I CYCGRG 2 cut(s) 86, 347
EcoICRI GAGCTC 1 cut(s) 421
EcoRII CCWGG 2 cut(s) 125, 656
EcoT38I GRGCYC 1 cut(s) 423
EgeI GGCGCC 1 cut(s) 238
EheI GGCGCC 1 cut(s) 238
FaeI CATG 2 cut(s) 106, 612
FaiI YATR 4 cut(s) 104, 142, 335, 610
FaqI GGGAC 3 cut(s) 370, 396, 627
FatI CATG 2 cut(s) 102, 608
FauI CCCGC 1 cut(s) 127
FblI GTMKAC 2 cut(s) 315, 393
FriOI GRGCYC 1 cut(s) 423
FspBI CTAG 1 cut(s) 432
GlaI GCGC 4 cut(s) 55, 238, 469, 511
GsuI CTGGAG 1 cut(s) 148
HaeII RGCGCY 2 cut(s) 57, 240
HaeIII GGCC 4 cut(s) 31, 135, 147, 288
HapII CCGG 8 cut(s) 32, 51, 75, 174, 210, 228, 360, 381
HgaI GACGC 1 cut(s) 178
HhaI GCGC 4 cut(s) 56, 239, 470, 512
Hin1I GRCGYC 1 cut(s) 237
Hin1II CATG 2 cut(s) 106, 612
Hin6I GCGC 4 cut(s) 54, 237, 468, 510
HinP1I GCGC 4 cut(s) 54, 237, 468, 510
HincII GTYRAC 2 cut(s) 316, 394
HindII GTYRAC 2 cut(s) 316, 394
HinfI GANTC 1 cut(s) 167
HpaII CCGG 8 cut(s) 32, 51, 75, 174, 210, 228, 360, 381
HphI GGTGA 2 cut(s) 439, 625
Hpy166II GTNNAC 3 cut(s) 7, 316, 394
Hpy188I TCNGA 3 cut(s) 69, 418, 651
Hpy188III TCNNGA 7 cut(s) 86, 88, 210, 228, 347, 441, 550
Hpy8I GTNNAC 3 cut(s) 7, 316, 394
Hpy99I CGWCG 4 cut(s) 317, 320, 458, 590
HpyAV CCTTC 3 cut(s) 537, 613, 646
HpyCH4III ACNGT 3 cut(s) 320, 500, 575
HpyCH4V TGCA 4 cut(s) 159, 462, 504, 522
HpyF3I CTNAG 1 cut(s) 271
Hsp92I GRCGYC 1 cut(s) 237
Hsp92II CATG 2 cut(s) 106, 612
HspAI GCGC 4 cut(s) 54, 237, 468, 510
KasI GGCGCC 1 cut(s) 236
Kpn2I TCCGGA 2 cut(s) 209, 227
KroI GCCGGC 1 cut(s) 74
KroNI GCCGGC 1 cut(s) 76
LmnI GCTCC 4 cut(s) 61, 212, 230, 418
Lsp1109I GCAGC 3 cut(s) 371, 499, 516
LweI GCATC 1 cut(s) 580
MabI ACCWGGT 1 cut(s) 656
MaeI CTAG 1 cut(s) 432
MaeIII GTNAC 4 cut(s) 190, 320, 427, 575
MboII GAAGA 1 cut(s) 522
MhlI GDGCHC 2 cut(s) 423, 563
MluCI AATT 1 cut(s) 622
MluI ACGCGT 1 cut(s) 555
Mly113I GGCGCC 1 cut(s) 237
MlyI GAGTC 1 cut(s) 161
MmeI TCCRAC 2 cut(s) 69, 92
MroI TCCGGA 2 cut(s) 209, 227
MroNI GCCGGC 1 cut(s) 74
MseI TTAA 1 cut(s) 399
MspA1I CMGCKG 1 cut(s) 507
MspI CCGG 8 cut(s) 32, 51, 75, 174, 210, 228, 360, 381
MspR9I CCNGG 4 cut(s) 33, 51, 127, 658
Mva1269I GAATGC 2 cut(s) 36, 227
MvaI CCWGG 2 cut(s) 127, 658
MvnI CGCG 2 cut(s) 470, 557
NaeI GCCGGC 1 cut(s) 76
NarI GGCGCC 1 cut(s) 237
NciI CCSGG 2 cut(s) 33, 51
NgoMIV GCCGGC 1 cut(s) 74
NlaIII CATG 2 cut(s) 106, 612
NlaIV GGNNCC 6 cut(s) 146, 208, 238, 345, 358, 364
NmeAIII GCCGAG 1 cut(s) 286
NmuCI GTSAC 2 cut(s) 190, 427
NspI RCATGY 1 cut(s) 612
PaeR7I CTCGAG 1 cut(s) 86
PcsI WCGNNNNNNNCGW 1 cut(s) 585
PctI GAATGC 2 cut(s) 36, 227
PdiI GCCGGC 1 cut(s) 76
PfoI TCCNGGA 1 cut(s) 125
PleI GAGTC 1 cut(s) 161
PluTI GGCGCC 1 cut(s) 240
PpsI GAGTC 1 cut(s) 161
Psp124BI GAGCTC 1 cut(s) 423
Psp6I CCWGG 2 cut(s) 125, 656
PspGI CCWGG 2 cut(s) 125, 656
PspN4I GGNNCC 6 cut(s) 146, 208, 238, 345, 358, 364
PspPI GGNCC 2 cut(s) 145, 357
RsaI GTAC 5 cut(s) 20, 373, 497, 536, 572
RsaNI GTAC 5 cut(s) 19, 372, 496, 535, 571
SacI GAGCTC 1 cut(s) 423
SalI GTCGAC 2 cut(s) 314, 392
SaqAI TTAA 1 cut(s) 399
Sau96I GGNCC 2 cut(s) 145, 357
ScaI AGTACT 1 cut(s) 497
SchI GAGTC 1 cut(s) 161
ScrFI CCNGG 4 cut(s) 33, 51, 127, 658
SduI GDGCHC 2 cut(s) 423, 563
SetI ASST 8 cut(s) 272, 330, 399, 423, 429, 605, 638, 662
SexAI ACCWGGT 1 cut(s) 656
SfaNI GCATC 1 cut(s) 580
SfoI GGCGCC 1 cut(s) 238
Sfr274I CTCGAG 1 cut(s) 86
SgrDI CGTCGACG 1 cut(s) 314
SinI GGWCC 1 cut(s) 357
SlaI CTCGAG 1 cut(s) 86
SmlI CTYRAG 3 cut(s) 86, 422, 564
SmoI CTYRAG 3 cut(s) 86, 422, 564
Sse9I AATT 1 cut(s) 622
SspDI GGCGCC 1 cut(s) 236
SspI AATATT 1 cut(s) 546
SspMI CTAG 1 cut(s) 432
SstI GAGCTC 1 cut(s) 423
StyD4I CCNGG 4 cut(s) 31, 49, 125, 656
TaaI ACNGT 3 cut(s) 320, 500, 575
TaqI TCGA 5 cut(s) 87, 165, 315, 393, 585
TasI AATT 1 cut(s) 622
TatI WGTACW 1 cut(s) 495
TauI GCSGC 7 cut(s) 138, 207, 237, 242, 288, 493, 510
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TscAI CASTG 1 cut(s) 30
TseFI GTSAC 2 cut(s) 190, 427
TseI GCWGC 3 cut(s) 384, 487, 504
Tsp45I GTSAC 2 cut(s) 190, 427
TspRI CASTG 1 cut(s) 30
VpaK11BI GGWCC 1 cut(s) 357
XceI RCATGY 1 cut(s) 612
XhoI CTCGAG 1 cut(s) 86
XmiI GTMKAC 2 cut(s) 315, 393
XspI CTAG 1 cut(s) 432
ZrmI AGTACT 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.