Rh6BG470100

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0006511
Physical Location & Seq
Reverse (-)
67813975 .. 67817010
3036 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG470100.1

Sequence Viewer

Length: 759 bp
ATGGCTCCATTAACACCTTTCTCGCTCTCTCTATTAACCCTTCTCGGTCTATTAACATCAGGAGCGCTGTCAACGACATTCACAATGGTAAACAAATGCGAGTACACAGTGTGGCCGGGCATTCTCTCCAACGCCGGCGTTCCGCCGCTTCCGACCACCGGCTTCGCTCTCCAGAAAGGCGAGACCAAGGCCCTAACCGCCCCCGCCTCCTGGGGCGGCCGCTTCTGGGGCCGAACCCTCTGCACCCACGACTCCACCGGAAAATTCTCCTGCGTCACAGGCGATTGCGGCTCCGGAAAGCTAGAATGCTCCGGAAGCGGCGCTGCCCCTCCCGCAACTCTCGCCGAGTTCACCTTAGACGGTGACGCCGGCCTTGACTTCTTTGACGTCAGCCTCGTCGACGGTTACAACCTCCCTATGCTGGTGGTTCCCCAGGGTGGGACCGGCACCAATTGTACCAACACCGGGTGCGTGGTCGACCTTAACGGCGTTTGTCCCTCGGAGCTCAAGGTGACTAGCGCTGACGGAAGCGAAGGCGTCGCGTGCAAGAGCGCGTGCGAGGCGTTCCAGCAGCCGCAGTACTGTTGCAGCGGCGCGTACGCTACACCCGACACGTGCAAGCCGTCTTCCTACTCGCAGGTATTCAAGAACGCGTGCCCTCACGCGTACAGTTACGCATACGACGATAGGACCAGCACCTTCACATGCGCCAATGCCGATTACACCATCACCTTCTGTCCCTCTCCGAACACCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

252

Amino Acids

26.22

Weight (kDa)

4.68

Isoelectric Point (pI)

35.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 31 - 247 1.1e-86 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 390
Acc36I ACCTGC 1 cut(s) 628
AccB1I GGYRCC 1 cut(s) 446
AccI GTMKAC 2 cut(s) 399, 477
AccII CGCG 5 cut(s) 542, 554, 596, 653, 665
AccIII TCCGGA 2 cut(s) 293, 311
AcoI YGGCCR 2 cut(s) 113, 217
AcsI RAATTY 1 cut(s) 263
AcvI CACGTG 1 cut(s) 615
AcyI GRCGYC 3 cut(s) 366, 387, 537
AdeI CACNNNGTG 2 cut(s) 111, 468
AfaI GTAC 5 cut(s) 104, 457, 581, 599, 668
AfeI AGCGCT 2 cut(s) 66, 520
AfiI CCNNNNNNNGG 7 cut(s) 158, 210, 226, 421, 437, 438, 465
AflIII ACRYGT 3 cut(s) 612, 651, 663
AgsI TTSAA 1 cut(s) 646
AjnI CCWGG 3 cut(s) 209, 432, 752
AluBI AGCT 2 cut(s) 301, 505
AluI AGCT 2 cut(s) 301, 505
Alw21I GWGCWC 1 cut(s) 507
Alw26I GTCTC 1 cut(s) 176
Aor13HI TCCGGA 2 cut(s) 293, 311
Aor51HI AGCGCT 2 cut(s) 66, 520
AoxI GGCC 5 cut(s) 113, 189, 217, 229, 370
ApeKI GCWGC 3 cut(s) 323, 571, 588
ApoI RAATTY 1 cut(s) 263
AspLEI GCGC 6 cut(s) 67, 323, 521, 554, 596, 710
AspS9I GGNCC 4 cut(s) 190, 229, 441, 690
AsuC2I CCSGG 2 cut(s) 117, 466
AsuHPI GGTGA 4 cut(s) 343, 374, 523, 721
AvaII GGWCC 2 cut(s) 441, 690
BaeGI GKGCMC 1 cut(s) 659
BanI GGYRCC 1 cut(s) 446
BanII GRGCYC 1 cut(s) 507
BbrPI CACGTG 1 cut(s) 615
BbsI GAAGAC 1 cut(s) 618
Bbv12I GWGCWC 1 cut(s) 507
BbvI GCAGC 3 cut(s) 310, 583, 600
BccI CCATC 1 cut(s) 734
BceAI ACGGC 2 cut(s) 502, 607
BcgI CGANNNNNNTGC 2 cut(s) 222, 256
BciT130I CCWGG 3 cut(s) 211, 434, 754
BcnI CCSGG 2 cut(s) 117, 466
BcoDI GTCTC 1 cut(s) 176
BfaI CTAG 2 cut(s) 302, 516
BfoI RGCGCY 3 cut(s) 68, 324, 522
BfuAI ACCTGC 1 cut(s) 628
BmcAI AGTACT 1 cut(s) 581
Bme1390I CCNGG 5 cut(s) 117, 211, 434, 466, 754
Bme18I GGWCC 2 cut(s) 441, 690
BmgT120I GGNCC 4 cut(s) 190, 229, 441, 690
BmiI GGNNCC 6 cut(s) 6, 230, 292, 429, 442, 448
BmrFI CCNGG 5 cut(s) 117, 211, 434, 466, 754
BpiI GAAGAC 1 cut(s) 618
BpmI CTGGAG 1 cut(s) 155
BpuEI CTTGAG 1 cut(s) 491
BpuMI CCSGG 2 cut(s) 117, 466
BsaAI YACGTR 1 cut(s) 615
BsaHI GRCGYC 3 cut(s) 366, 387, 537
BsaI GGTCTC 1 cut(s) 176
BsaJI CCNNGG 5 cut(s) 186, 210, 432, 433, 498
BsaWI WCCGGW 3 cut(s) 257, 293, 311
Bsc4I CCNNNNNNNGG 7 cut(s) 158, 210, 226, 421, 437, 438, 465
Bse118I RCCGGY 4 cut(s) 134, 158, 368, 443
BseAI TCCGGA 2 cut(s) 293, 311
BseBI CCWGG 3 cut(s) 211, 434, 754
BseDI CCNNGG 5 cut(s) 186, 210, 432, 433, 498
BseLI CCNNNNNNNGG 7 cut(s) 158, 210, 226, 421, 437, 438, 465
BseSI GKGCMC 1 cut(s) 659
BseX3I CGGCCG 1 cut(s) 217
BseXI GCAGC 3 cut(s) 310, 583, 600
BsgI GTGCAG 1 cut(s) 226
Bsh1236I CGCG 5 cut(s) 542, 554, 596, 653, 665
Bsh1285I CGRYCG 1 cut(s) 220
BshFI GGCC 5 cut(s) 115, 191, 219, 231, 372
BshNI GGYRCC 1 cut(s) 446
BsiEI CGRYCG 1 cut(s) 220
BsiHKAI GWGCWC 1 cut(s) 507
BsiSI CCGG 9 cut(s) 116, 135, 159, 258, 294, 312, 369, 444, 465
BsiWI CGTACG 1 cut(s) 597
BslFI GGGAC 3 cut(s) 454, 480, 723
BslI CCNNNNNNNGG 7 cut(s) 158, 210, 226, 421, 437, 438, 465
BsmAI GTCTC 1 cut(s) 176
BsmFI GGGAC 3 cut(s) 454, 480, 723
BsmI GAATGC 2 cut(s) 120, 311
BsnI GGCC 5 cut(s) 115, 191, 219, 231, 372
Bso31I GGTCTC 1 cut(s) 176
Bsp1286I GDGCHC 2 cut(s) 507, 659
Bsp13I TCCGGA 2 cut(s) 293, 311
BspANI GGCC 5 cut(s) 115, 191, 219, 231, 372
BspEI TCCGGA 2 cut(s) 293, 311
BspFNI CGCG 5 cut(s) 542, 554, 596, 653, 665
BspLI GGNNCC 6 cut(s) 6, 230, 292, 429, 442, 448
BspMI ACCTGC 1 cut(s) 628
BspT107I GGYRCC 1 cut(s) 446
BspTNI GGTCTC 1 cut(s) 176
BsrFI RCCGGY 4 cut(s) 134, 158, 368, 443
BssAI RCCGGY 4 cut(s) 134, 158, 368, 443
BssECI CCNNGG 5 cut(s) 186, 210, 432, 433, 498
BssNI GRCGYC 3 cut(s) 366, 387, 537
BssT1I CCWWGG 1 cut(s) 186
Bst2UI CCWGG 3 cut(s) 211, 434, 754
Bst4CI ACNGT 5 cut(s) 109, 362, 404, 584, 671
BstACI GRCGYC 3 cut(s) 366, 387, 537
BstBAI YACGTR 1 cut(s) 615
BstC8I GCNNGC 6 cut(s) 136, 370, 544, 556, 620, 655
BstDEI CTNAG 1 cut(s) 355
BstFNI CGCG 5 cut(s) 542, 554, 596, 653, 665
BstH2I RGCGCY 3 cut(s) 68, 324, 522
BstHHI GCGC 6 cut(s) 67, 323, 521, 554, 596, 710
BstMAI GTCTC 1 cut(s) 176
BstMCI CGRYCG 1 cut(s) 220
BstMWI GCNNNNNNNGC 9 cut(s) 197, 228, 279, 288, 315, 332, 341, 543, 560
BstNI CCWGG 3 cut(s) 211, 434, 754
BstNSI RCATGY 1 cut(s) 708
BstSCI CCNGG 5 cut(s) 115, 209, 432, 464, 752
BstSLI GKGCMC 1 cut(s) 659
BstUI CGCG 5 cut(s) 542, 554, 596, 653, 665
BstV1I GCAGC 3 cut(s) 310, 583, 600
BstV2I GAAGAC 1 cut(s) 618
BstZI CGGCCG 1 cut(s) 217
BsuRI GGCC 5 cut(s) 115, 191, 219, 231, 372
BtsIMutI CAGTG 1 cut(s) 114
BveI ACCTGC 1 cut(s) 628
Cac8I GCNNGC 6 cut(s) 136, 370, 544, 556, 620, 655
CciNI GCGGCCGC 1 cut(s) 217
CfoI GCGC 6 cut(s) 67, 323, 521, 554, 596, 710
Cfr10I RCCGGY 4 cut(s) 134, 158, 368, 443
Cfr13I GGNCC 4 cut(s) 190, 229, 441, 690
CseI GACGC 3 cut(s) 262, 374, 526
CsiI ACCWGGT 1 cut(s) 752
Csp6I GTAC 5 cut(s) 103, 456, 580, 598, 667
CviAII CATG 1 cut(s) 705
CviQI GTAC 5 cut(s) 103, 456, 580, 598, 667
DdeI CTNAG 1 cut(s) 355
DraIII CACNNNGTG 2 cut(s) 111, 468
EaeI YGGCCR 2 cut(s) 113, 217
EagI CGGCCG 1 cut(s) 217
EciI GGCGGA 1 cut(s) 132
Ecl136II GAGCTC 1 cut(s) 505
EclXI CGGCCG 1 cut(s) 217
Eco130I CCWWGG 1 cut(s) 186
Eco24I GRGCYC 1 cut(s) 507
Eco31I GGTCTC 1 cut(s) 176
Eco47I GGWCC 2 cut(s) 441, 690
Eco47III AGCGCT 2 cut(s) 66, 520
Eco52I CGGCCG 1 cut(s) 217
Eco53kI GAGCTC 1 cut(s) 505
Eco72I CACGTG 1 cut(s) 615
EcoICRI GAGCTC 1 cut(s) 505
EcoO109I RGGNCCY 1 cut(s) 190
EcoRII CCWGG 3 cut(s) 209, 432, 752
EcoT14I CCWWGG 1 cut(s) 186
EcoT38I GRGCYC 1 cut(s) 507
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 1 cut(s) 708
FaiI YATR 3 cut(s) 419, 679, 706
FaqI GGGAC 3 cut(s) 454, 480, 723
FatI CATG 1 cut(s) 704
FauI CCCGC 2 cut(s) 211, 340
FblI GTMKAC 2 cut(s) 399, 477
FriOI GRGCYC 1 cut(s) 507
FspBI CTAG 2 cut(s) 302, 516
GlaI GCGC 6 cut(s) 66, 322, 520, 553, 595, 709
GsuI CTGGAG 1 cut(s) 155
HaeII RGCGCY 3 cut(s) 68, 324, 522
HaeIII GGCC 5 cut(s) 115, 191, 219, 231, 372
HapII CCGG 9 cut(s) 116, 135, 159, 258, 294, 312, 369, 444, 465
HgaI GACGC 3 cut(s) 262, 374, 526
HhaI GCGC 6 cut(s) 67, 323, 521, 554, 596, 710
Hin1I GRCGYC 3 cut(s) 366, 387, 537
Hin1II CATG 1 cut(s) 708
Hin6I GCGC 6 cut(s) 65, 321, 519, 552, 594, 708
HinP1I GCGC 6 cut(s) 65, 321, 519, 552, 594, 708
HincII GTYRAC 3 cut(s) 72, 400, 478
HindII GTYRAC 3 cut(s) 72, 400, 478
HinfI GANTC 1 cut(s) 251
HpaII CCGG 9 cut(s) 116, 135, 159, 258, 294, 312, 369, 444, 465
HphI GGTGA 4 cut(s) 343, 374, 523, 721
Hpy166II GTNNAC 6 cut(s) 72, 91, 105, 351, 400, 478
Hpy188I TCNGA 3 cut(s) 153, 502, 747
Hpy188III TCNNGA 5 cut(s) 60, 172, 294, 312, 646
Hpy8I GTNNAC 6 cut(s) 72, 91, 105, 351, 400, 478
Hpy99I CGWCG 4 cut(s) 401, 404, 542, 686
HpyAV CCTTC 4 cut(s) 50, 527, 709, 742
HpyCH4III ACNGT 5 cut(s) 109, 362, 404, 584, 671
HpyCH4IV ACGT 2 cut(s) 387, 614
HpyCH4V TGCA 4 cut(s) 243, 546, 588, 618
HpyF10VI GCNNNNNNNGC 9 cut(s) 197, 228, 279, 288, 315, 332, 341, 543, 560
HpyF3I CTNAG 1 cut(s) 355
HpySE526I ACGT 2 cut(s) 387, 614
Hsp92I GRCGYC 3 cut(s) 366, 387, 537
Hsp92II CATG 1 cut(s) 708
HspAI GCGC 6 cut(s) 65, 321, 519, 552, 594, 708
Kpn2I TCCGGA 2 cut(s) 293, 311
KroI GCCGGC 2 cut(s) 134, 368
KroNI GCCGGC 2 cut(s) 136, 370
LmnI GCTCC 5 cut(s) 10, 62, 296, 314, 502
Lsp1109I GCAGC 3 cut(s) 310, 583, 600
MabI ACCWGGT 1 cut(s) 752
MaeI CTAG 2 cut(s) 302, 516
MaeII ACGT 2 cut(s) 387, 614
MaeIII GTNAC 5 cut(s) 274, 362, 404, 511, 671
MboII GAAGA 1 cut(s) 618
MfeI CAATTG 1 cut(s) 451
MhlI GDGCHC 2 cut(s) 507, 659
MluCI AATT 2 cut(s) 263, 451
MluI ACGCGT 2 cut(s) 651, 663
MlyI GAGTC 1 cut(s) 245
MmeI TCCRAC 2 cut(s) 153, 176
MnlI CCTC 9 cut(s) 217, 248, 339, 404, 422, 508, 553, 669, 751
MreI CGCCGGCG 1 cut(s) 134
MroI TCCGGA 2 cut(s) 293, 311
MroNI GCCGGC 2 cut(s) 134, 368
MseI TTAA 4 cut(s) 11, 35, 53, 483
MspA1I CMGCKG 1 cut(s) 591
MspI CCGG 9 cut(s) 116, 135, 159, 258, 294, 312, 369, 444, 465
MspR9I CCNGG 5 cut(s) 117, 211, 434, 466, 754
MunI CAATTG 1 cut(s) 451
Mva1269I GAATGC 2 cut(s) 120, 311
MvaI CCWGG 3 cut(s) 211, 434, 754
MvnI CGCG 5 cut(s) 542, 554, 596, 653, 665
MwoI GCNNNNNNNGC 9 cut(s) 197, 228, 279, 288, 315, 332, 341, 543, 560
NaeI GCCGGC 2 cut(s) 136, 370
NciI CCSGG 2 cut(s) 117, 466
NgoMIV GCCGGC 2 cut(s) 134, 368
NlaIII CATG 1 cut(s) 708
NlaIV GGNNCC 6 cut(s) 6, 230, 292, 429, 442, 448
NmeAIII GCCGAG 1 cut(s) 370
NmuCI GTSAC 3 cut(s) 274, 362, 511
NotI GCGGCCGC 1 cut(s) 217
NspI RCATGY 1 cut(s) 708
PasI CCCWGGG 1 cut(s) 433
PcsI WCGNNNNNNNCGW 4 cut(s) 393, 606, 620, 681
PctI GAATGC 2 cut(s) 120, 311
PdiI GCCGGC 2 cut(s) 136, 370
Pfl23II CGTACG 1 cut(s) 597
PleI GAGTC 1 cut(s) 245
PmaCI CACGTG 1 cut(s) 615
PmlI CACGTG 1 cut(s) 615
PpsI GAGTC 1 cut(s) 245
Ppu21I YACGTR 1 cut(s) 615
Psp124BI GAGCTC 1 cut(s) 507
Psp6I CCWGG 3 cut(s) 209, 432, 752
PspCI CACGTG 1 cut(s) 615
PspGI CCWGG 3 cut(s) 209, 432, 752
PspLI CGTACG 1 cut(s) 597
PspN4I GGNNCC 6 cut(s) 6, 230, 292, 429, 442, 448
PspPI GGNCC 4 cut(s) 190, 229, 441, 690
RsaI GTAC 5 cut(s) 104, 457, 581, 599, 668
RsaNI GTAC 5 cut(s) 103, 456, 580, 598, 667
SacI GAGCTC 1 cut(s) 507
SalI GTCGAC 2 cut(s) 398, 476
SaqAI TTAA 4 cut(s) 11, 35, 53, 483
Sau96I GGNCC 4 cut(s) 190, 229, 441, 690
ScaI AGTACT 1 cut(s) 581
SchI GAGTC 1 cut(s) 245
ScrFI CCNGG 5 cut(s) 117, 211, 434, 466, 754
SduI GDGCHC 2 cut(s) 507, 659
SexAI ACCWGGT 1 cut(s) 752
SgrAI CRCCGGYG 1 cut(s) 134
SgrDI CGTCGACG 1 cut(s) 398
SinI GGWCC 2 cut(s) 441, 690
SmlI CTYRAG 1 cut(s) 506
SmoI CTYRAG 1 cut(s) 506
Sse9I AATT 2 cut(s) 263, 451
SspMI CTAG 2 cut(s) 302, 516
SstI GAGCTC 1 cut(s) 507
StyD4I CCNGG 5 cut(s) 115, 209, 432, 464, 752
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 5 cut(s) 109, 362, 404, 584, 671
TaiI ACGT 2 cut(s) 390, 617
TaqI TCGA 2 cut(s) 399, 477
TaqII GACCGA 1 cut(s) 35
TasI AATT 2 cut(s) 263, 451
TatI WGTACW 2 cut(s) 102, 579
TauI GCSGC 7 cut(s) 148, 219, 222, 291, 321, 577, 594
Tru1I TTAA 4 cut(s) 11, 35, 53, 483
Tru9I TTAA 4 cut(s) 11, 35, 53, 483
TscAI CASTG 1 cut(s) 114
TseFI GTSAC 3 cut(s) 274, 362, 511
TseI GCWGC 3 cut(s) 323, 571, 588
Tsp45I GTSAC 3 cut(s) 274, 362, 511
TspGWI ACGGA 1 cut(s) 540
TspRI CASTG 1 cut(s) 114
VpaK11BI GGWCC 2 cut(s) 441, 690
XapI RAATTY 1 cut(s) 263
XceI RCATGY 1 cut(s) 708
XmiI GTMKAC 2 cut(s) 399, 477
XspI CTAG 2 cut(s) 302, 516
ZraI GACGTC 1 cut(s) 388
ZrmI AGTACT 1 cut(s) 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.