Rmu_sc0023426.1_g000001

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023426.1
OG0006511
Physical Location & Seq
Forward (+)
1517 .. 3324
1808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023426.1_g000001.1.cds

Sequence Viewer

Length: 1035 bp
atggctcctccattaacacccttctcgctctctctattaacccttctcggtctattaacatcaggggcgctgtcaacgacattcacaatggtaaacaaatgcgagtacacagtgtggccgggcattctctccaacgccggcgttccgcctcttccgaccaccggcttcgccctccagaaaagcgagaccaagaccctaaccgcccccgcctcctggggcggccgcttctggggccgaaccctctgcacccacgactccaccggaaaattctcctgtgtcaccggcgattgcggctccggaaagctagaatgctccggaagcggcgctgcccctcccgcaactctcgccgagttcaccttagacggtgccggcggccttgacttctttgacgtcagcctcgtcgacggttacaacctccctatgctggtggttccccagggtgggaccggcaccaattgtaccaacaccggctgcgtggtcgaccttaacggcgtttgtccgtcggagctcaaggtgactagcgctgccggaagcgaaggcgtcgcgtgcaagagcgcgtgcgaggcgtttcagcagccgcagtactgttgcagcggcgcgtacgctacacccgacacgtgcaagccttcttcctactcgcaaatattcaagaacgcgtgccctcaagcgtacagttacgcatacgacgataagaccagcaccttcacatgcgccgatgccgattacaccatcaccttctgtccctctccgaacaccagtcagaaagcatcgcaagggcaaaccacccagccggctcagactagcaactcgccggagattaacagtacaatggtgtatgaaggctccgatgacggaagcgaagcatggtcgtcgtccacatccgtccacgtgttctcatcacatgcagccgcggcagccgtcagcgtcacggcaatgggccatgtgatattgggtcccacattgtgcccgtctgacgcggattcgagtcaggcaggatgggtaaagcccacccacccggcagctactactggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

344

Amino Acids

35.34

Weight (kDa)

4.64

Isoelectric Point (pI)

40.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 393
AccB1I GGYRCC 2 cut(s) 365, 449
AccI GTMKAC 2 cut(s) 402, 480
AccII CGCG 6 cut(s) 545, 557, 599, 656, 911, 977
AccIII TCCGGA 2 cut(s) 296, 314
AcoI YGGCCR 2 cut(s) 116, 220
AcsI RAATTY 1 cut(s) 266
AcvI CACGTG 2 cut(s) 618, 889
AcyI GRCGYC 2 cut(s) 390, 540
AdeI CACNNNGTG 2 cut(s) 114, 963
AfaI GTAC 6 cut(s) 107, 460, 584, 602, 671, 826
AfeI AGCGCT 1 cut(s) 523
AfiI CCNNNNNNNGG 6 cut(s) 161, 213, 229, 424, 440, 441
AflIII ACRYGT 3 cut(s) 615, 654, 888
AgsI TTSAA 1 cut(s) 649
AjnI CCWGG 2 cut(s) 212, 435
AluBI AGCT 3 cut(s) 304, 508, 1022
AluI AGCT 3 cut(s) 304, 508, 1022
Alw21I GWGCWC 1 cut(s) 510
Alw26I GTCTC 1 cut(s) 179
Aor13HI TCCGGA 2 cut(s) 296, 314
Aor51HI AGCGCT 1 cut(s) 523
AoxI GGCC 5 cut(s) 116, 220, 232, 373, 937
ApeKI GCWGC 8 cut(s) 326, 471, 524, 574, 591, 905, 914, 1019
ApoI RAATTY 1 cut(s) 266
AspLEI GCGC 6 cut(s) 70, 326, 524, 557, 599, 713
AspS9I GGNCC 4 cut(s) 232, 444, 937, 953
AsuC2I CCSGG 2 cut(s) 120, 1016
AsuHPI GGTGA 4 cut(s) 271, 346, 526, 724
AvaII GGWCC 2 cut(s) 444, 953
BaeGI GKGCMC 2 cut(s) 662, 968
BanI GGYRCC 2 cut(s) 365, 449
BanII GRGCYC 1 cut(s) 510
BbrPI CACGTG 2 cut(s) 618, 889
Bbv12I GWGCWC 1 cut(s) 510
BbvI GCAGC 8 cut(s) 313, 458, 511, 586, 603, 917, 926, 1031
BccI CCATC 2 cut(s) 737, 990
BceAI ACGGC 3 cut(s) 505, 902, 945
BcgI CGANNNNNNTGC 4 cut(s) 225, 259, 852, 886
BciT130I CCWGG 2 cut(s) 214, 437
BcnI CCSGG 2 cut(s) 120, 1016
BcoDI GTCTC 1 cut(s) 179
BfaI CTAG 3 cut(s) 305, 519, 801
BfoI RGCGCY 3 cut(s) 71, 327, 525
BmcAI AGTACT 1 cut(s) 584
Bme1390I CCNGG 4 cut(s) 120, 214, 437, 1016
Bme18I GGWCC 2 cut(s) 444, 953
BmgT120I GGNCC 4 cut(s) 232, 444, 937, 953
BmrFI CCNGG 4 cut(s) 120, 214, 437, 1016
BmsI GCATC 2 cut(s) 706, 776
BpmI CTGGAG 1 cut(s) 158
BpuEI CTTGAG 2 cut(s) 494, 648
BpuMI CCSGG 2 cut(s) 120, 1016
BsaAI YACGTR 2 cut(s) 618, 889
BsaHI GRCGYC 2 cut(s) 390, 540
BsaI GGTCTC 1 cut(s) 179
BsaJI CCNNGG 4 cut(s) 213, 435, 436, 909
BsaWI WCCGGW 3 cut(s) 260, 296, 314
Bsc4I CCNNNNNNNGG 6 cut(s) 161, 213, 229, 424, 440, 441
Bse118I RCCGGY 7 cut(s) 137, 161, 281, 368, 446, 467, 790
Bse1I ACTGG 2 cut(s) 756, 1033
Bse3DI GCAATG 1 cut(s) 939
BseAI TCCGGA 2 cut(s) 296, 314
BseBI CCWGG 2 cut(s) 214, 437
BseDI CCNNGG 4 cut(s) 213, 435, 436, 909
BseGI GGATG 2 cut(s) 878, 1001
BseLI CCNNNNNNNGG 6 cut(s) 161, 213, 229, 424, 440, 441
BseMI GCAATG 1 cut(s) 939
BseMII CTCAG 1 cut(s) 809
BseNI ACTGG 2 cut(s) 756, 1033
BseSI GKGCMC 2 cut(s) 662, 968
BseX3I CGGCCG 1 cut(s) 220
BseXI GCAGC 8 cut(s) 313, 458, 511, 586, 603, 917, 926, 1031
BseYI CCCAGC 1 cut(s) 786
BsgI GTGCAG 1 cut(s) 229
Bsh1236I CGCG 6 cut(s) 545, 557, 599, 656, 911, 977
Bsh1285I CGRYCG 1 cut(s) 223
BshFI GGCC 5 cut(s) 118, 222, 234, 375, 939
BshNI GGYRCC 2 cut(s) 365, 449
BsiEI CGRYCG 1 cut(s) 223
BsiHKAI GWGCWC 1 cut(s) 510
BsiWI CGTACG 1 cut(s) 600
BslFI GGGAC 3 cut(s) 457, 726, 939
BslI CCNNNNNNNGG 6 cut(s) 161, 213, 229, 424, 440, 441
BsmAI GTCTC 1 cut(s) 179
BsmFI GGGAC 3 cut(s) 457, 726, 939
BsmI GAATGC 2 cut(s) 123, 314
BsnI GGCC 5 cut(s) 118, 222, 234, 375, 939
Bso31I GGTCTC 1 cut(s) 179
Bsp1286I GDGCHC 3 cut(s) 510, 662, 968
Bsp13I TCCGGA 2 cut(s) 296, 314
BspANI GGCC 5 cut(s) 118, 222, 234, 375, 939
BspCNI CTCAG 1 cut(s) 808
BspEI TCCGGA 2 cut(s) 296, 314
BspFNI CGCG 6 cut(s) 545, 557, 599, 656, 911, 977
BspT107I GGYRCC 2 cut(s) 365, 449
BspTNI GGTCTC 1 cut(s) 179
BsrDI GCAATG 1 cut(s) 939
BsrFI RCCGGY 7 cut(s) 137, 161, 281, 368, 446, 467, 790
BsrI ACTGG 2 cut(s) 756, 1033
BssAI RCCGGY 7 cut(s) 137, 161, 281, 368, 446, 467, 790
BssECI CCNNGG 4 cut(s) 213, 435, 436, 909
BssNI GRCGYC 2 cut(s) 390, 540
Bst2UI CCWGG 2 cut(s) 214, 437
Bst4CI ACNGT 6 cut(s) 112, 365, 407, 587, 674, 824
Bst6I CTCTTC 1 cut(s) 156
BstACI GRCGYC 2 cut(s) 390, 540
BstBAI YACGTR 2 cut(s) 618, 889
BstC8I GCNNGC 7 cut(s) 139, 370, 547, 559, 623, 658, 792
BstDEI CTNAG 2 cut(s) 358, 795
BstDSI CCRYGG 1 cut(s) 909
BstF5I GGATG 2 cut(s) 878, 1001
BstFNI CGCG 6 cut(s) 545, 557, 599, 656, 911, 977
BstH2I RGCGCY 3 cut(s) 71, 327, 525
BstHHI GCGC 6 cut(s) 70, 326, 524, 557, 599, 713
BstMAI GTCTC 1 cut(s) 179
BstMCI CGRYCG 1 cut(s) 223
BstMWI GCNNNNNNNGC 9 cut(s) 231, 291, 318, 335, 344, 546, 563, 911, 914
BstNI CCWGG 2 cut(s) 214, 437
BstNSI RCATGY 2 cut(s) 711, 905
BstSCI CCNGG 4 cut(s) 118, 212, 435, 1014
BstSLI GKGCMC 2 cut(s) 662, 968
BstUI CGCG 6 cut(s) 545, 557, 599, 656, 911, 977
BstV1I GCAGC 8 cut(s) 313, 458, 511, 586, 603, 917, 926, 1031
BstZI CGGCCG 1 cut(s) 220
BsuRI GGCC 5 cut(s) 118, 222, 234, 375, 939
BtgI CCRYGG 1 cut(s) 909
BtgZI GCGATG 1 cut(s) 753
BtsCI GGATG 2 cut(s) 878, 1001
BtsIMutI CAGTG 1 cut(s) 117
Cac8I GCNNGC 7 cut(s) 139, 370, 547, 559, 623, 658, 792
CciNI GCGGCCGC 1 cut(s) 220
CfoI GCGC 6 cut(s) 70, 326, 524, 557, 599, 713
Cfr10I RCCGGY 7 cut(s) 137, 161, 281, 368, 446, 467, 790
Cfr13I GGNCC 4 cut(s) 232, 444, 937, 953
Cfr42I CCGCGG 1 cut(s) 912
CseI GACGC 3 cut(s) 529, 913, 983
Csp6I GTAC 6 cut(s) 106, 459, 583, 601, 670, 825
CviAII CATG 4 cut(s) 708, 864, 902, 941
CviQI GTAC 6 cut(s) 106, 459, 583, 601, 670, 825
DdeI CTNAG 2 cut(s) 358, 795
DraIII CACNNNGTG 2 cut(s) 114, 963
EaeI YGGCCR 2 cut(s) 116, 220
EagI CGGCCG 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
EciI GGCGGA 1 cut(s) 135
Ecl136II GAGCTC 1 cut(s) 508
EclXI CGGCCG 1 cut(s) 220
Eco24I GRGCYC 1 cut(s) 510
Eco31I GGTCTC 1 cut(s) 179
Eco47I GGWCC 2 cut(s) 444, 953
Eco47III AGCGCT 1 cut(s) 523
Eco52I CGGCCG 1 cut(s) 220
Eco53kI GAGCTC 1 cut(s) 508
Eco72I CACGTG 2 cut(s) 618, 889
EcoICRI GAGCTC 1 cut(s) 508
EcoO109I RGGNCCY 1 cut(s) 953
EcoRII CCWGG 2 cut(s) 212, 435
EcoT38I GRGCYC 1 cut(s) 510
FaeI CATG 4 cut(s) 711, 867, 905, 944
FaiI YATR 7 cut(s) 422, 682, 709, 837, 865, 903, 942
FaqI GGGAC 3 cut(s) 457, 726, 939
FatI CATG 4 cut(s) 707, 863, 901, 940
FauI CCCGC 2 cut(s) 214, 343
FblI GTMKAC 2 cut(s) 402, 480
FokI GGATG 2 cut(s) 865, 1008
FriOI GRGCYC 1 cut(s) 510
FspBI CTAG 3 cut(s) 305, 519, 801
GlaI GCGC 6 cut(s) 69, 325, 523, 556, 598, 712
GsaI CCCAGC 1 cut(s) 790
GsuI CTGGAG 1 cut(s) 158
HaeII RGCGCY 3 cut(s) 71, 327, 525
HaeIII GGCC 5 cut(s) 118, 222, 234, 375, 939
HgaI GACGC 3 cut(s) 529, 913, 983
HhaI GCGC 6 cut(s) 70, 326, 524, 557, 599, 713
Hin1I GRCGYC 2 cut(s) 390, 540
Hin1II CATG 4 cut(s) 711, 867, 905, 944
Hin6I GCGC 6 cut(s) 68, 324, 522, 555, 597, 711
HinP1I GCGC 6 cut(s) 68, 324, 522, 555, 597, 711
HincII GTYRAC 3 cut(s) 75, 403, 481
HindII GTYRAC 3 cut(s) 75, 403, 481
HinfI GANTC 3 cut(s) 254, 980, 985
HphI GGTGA 4 cut(s) 271, 346, 526, 724
Hpy166II GTNNAC 8 cut(s) 75, 94, 108, 354, 403, 481, 876, 886
Hpy188I TCNGA 7 cut(s) 156, 505, 750, 762, 798, 847, 973
Hpy188III TCNNGA 4 cut(s) 175, 297, 315, 649
Hpy8I GTNNAC 8 cut(s) 75, 94, 108, 354, 403, 481, 876, 886
Hpy99I CGWCG 6 cut(s) 404, 407, 505, 545, 689, 874
HpyAV CCTTC 7 cut(s) 31, 53, 530, 636, 712, 745, 833
HpyCH4III ACNGT 6 cut(s) 112, 365, 407, 587, 674, 824
HpyCH4IV ACGT 3 cut(s) 390, 617, 888
HpyCH4V TGCA 5 cut(s) 246, 549, 591, 621, 905
HpyF10VI GCNNNNNNNGC 9 cut(s) 231, 291, 318, 335, 344, 546, 563, 911, 914
HpyF3I CTNAG 2 cut(s) 358, 795
HpySE526I ACGT 3 cut(s) 390, 617, 888
Hsp92I GRCGYC 2 cut(s) 390, 540
Hsp92II CATG 4 cut(s) 711, 867, 905, 944
HspAI GCGC 6 cut(s) 68, 324, 522, 555, 597, 711
KflI GGGWCCC 1 cut(s) 953
Kpn2I TCCGGA 2 cut(s) 296, 314
KroI GCCGGC 3 cut(s) 137, 368, 790
KroNI GCCGGC 3 cut(s) 139, 370, 792
KspI CCGCGG 1 cut(s) 912
LmnI GCTCC 5 cut(s) 10, 299, 317, 505, 848
Lsp1109I GCAGC 8 cut(s) 313, 458, 511, 586, 603, 917, 926, 1031
LweI GCATC 2 cut(s) 706, 776
MaeI CTAG 3 cut(s) 305, 519, 801
MaeII ACGT 3 cut(s) 390, 617, 888
MaeIII GTNAC 5 cut(s) 277, 407, 514, 674, 925
MboII GAAGA 2 cut(s) 143, 621
MfeI CAATTG 1 cut(s) 454
MhlI GDGCHC 3 cut(s) 510, 662, 968
MluCI AATT 2 cut(s) 266, 454
MluI ACGCGT 1 cut(s) 654
MlyI GAGTC 2 cut(s) 248, 994
MmeI TCCRAC 3 cut(s) 156, 179, 483
MreI CGCCGGCG 1 cut(s) 137
MroI TCCGGA 2 cut(s) 296, 314
MroNI GCCGGC 3 cut(s) 137, 368, 790
MseI TTAA 6 cut(s) 14, 38, 56, 486, 819, 1033
MslI CAYNNNNRTG 1 cut(s) 932
MspA1I CMGCKG 2 cut(s) 594, 911
MspR9I CCNGG 4 cut(s) 120, 214, 437, 1016
MunI CAATTG 1 cut(s) 454
Mva1269I GAATGC 2 cut(s) 123, 314
MvaI CCWGG 2 cut(s) 214, 437
MvnI CGCG 6 cut(s) 545, 557, 599, 656, 911, 977
MwoI GCNNNNNNNGC 9 cut(s) 231, 291, 318, 335, 344, 546, 563, 911, 914
NaeI GCCGGC 3 cut(s) 139, 370, 792
NciI CCSGG 2 cut(s) 120, 1016
NgoMIV GCCGGC 3 cut(s) 137, 368, 790
NlaIII CATG 4 cut(s) 711, 867, 905, 944
NmeAIII GCCGAG 1 cut(s) 373
NmuCI GTSAC 3 cut(s) 277, 514, 925
NotI GCGGCCGC 1 cut(s) 220
NspI RCATGY 2 cut(s) 711, 905
PasI CCCWGGG 1 cut(s) 436
PcsI WCGNNNNNNNCGW 3 cut(s) 396, 609, 684
PctI GAATGC 2 cut(s) 123, 314
PdiI GCCGGC 3 cut(s) 139, 370, 792
PfeI GAWTC 1 cut(s) 980
Pfl23II CGTACG 1 cut(s) 600
PleI GAGTC 2 cut(s) 248, 993
PmaCI CACGTG 2 cut(s) 618, 889
PmlI CACGTG 2 cut(s) 618, 889
PpsI GAGTC 2 cut(s) 248, 993
Ppu21I YACGTR 2 cut(s) 618, 889
PpuMI RGGWCCY 1 cut(s) 953
Psp124BI GAGCTC 1 cut(s) 510
Psp5II RGGWCCY 1 cut(s) 953
Psp6I CCWGG 2 cut(s) 212, 435
PspCI CACGTG 2 cut(s) 618, 889
PspFI CCCAGC 1 cut(s) 786
PspGI CCWGG 2 cut(s) 212, 435
PspLI CGTACG 1 cut(s) 600
PspPI GGNCC 4 cut(s) 232, 444, 937, 953
PspPPI RGGWCCY 1 cut(s) 953
RsaI GTAC 6 cut(s) 107, 460, 584, 602, 671, 826
RsaNI GTAC 6 cut(s) 106, 459, 583, 601, 670, 825
RseI CAYNNNNRTG 1 cut(s) 932
SacI GAGCTC 1 cut(s) 510
SacII CCGCGG 1 cut(s) 912
SalI GTCGAC 2 cut(s) 401, 479
SaqAI TTAA 6 cut(s) 14, 38, 56, 486, 819, 1033
Sau96I GGNCC 4 cut(s) 232, 444, 937, 953
ScaI AGTACT 1 cut(s) 584
SchI GAGTC 2 cut(s) 248, 994
ScrFI CCNGG 4 cut(s) 120, 214, 437, 1016
SduI GDGCHC 3 cut(s) 510, 662, 968
SfaNI GCATC 2 cut(s) 706, 776
Sfr303I CCGCGG 1 cut(s) 912
SgrAI CRCCGGYG 2 cut(s) 137, 281
SgrBI CCGCGG 1 cut(s) 912
SgrDI CGTCGACG 1 cut(s) 401
SinI GGWCC 2 cut(s) 444, 953
SmiMI CAYNNNNRTG 1 cut(s) 932
SmlI CTYRAG 2 cut(s) 509, 663
SmoI CTYRAG 2 cut(s) 509, 663
Sse9I AATT 2 cut(s) 266, 454
SspI AATATT 1 cut(s) 645
SspMI CTAG 3 cut(s) 305, 519, 801
SstI GAGCTC 1 cut(s) 510
StyD4I CCNGG 4 cut(s) 118, 212, 435, 1014
TaaI ACNGT 6 cut(s) 112, 365, 407, 587, 674, 824
TaiI ACGT 3 cut(s) 393, 620, 891
TaqI TCGA 3 cut(s) 402, 480, 983
TaqII GACCGA 1 cut(s) 38
TasI AATT 2 cut(s) 266, 454
TatI WGTACW 3 cut(s) 105, 582, 824
TauI GCSGC 9 cut(s) 222, 225, 294, 324, 375, 580, 597, 911, 914
TfiI GAWTC 1 cut(s) 980
Tru1I TTAA 6 cut(s) 14, 38, 56, 486, 819, 1033
Tru9I TTAA 6 cut(s) 14, 38, 56, 486, 819, 1033
TscAI CASTG 1 cut(s) 117
TseFI GTSAC 3 cut(s) 277, 514, 925
TseI GCWGC 8 cut(s) 326, 471, 524, 574, 591, 905, 914, 1019
Tsp45I GTSAC 3 cut(s) 277, 514, 925
TspDTI ATGAA 1 cut(s) 852
TspGWI ACGGA 3 cut(s) 489, 867, 871
TspRI CASTG 1 cut(s) 117
VpaK11BI GGWCC 2 cut(s) 444, 953
XapI RAATTY 1 cut(s) 266
XceI RCATGY 2 cut(s) 711, 905
XmiI GTMKAC 2 cut(s) 402, 480
XspI CTAG 3 cut(s) 305, 519, 801
ZraI GACGTC 1 cut(s) 391
ZrmI AGTACT 1 cut(s) 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.