AT1G20990

PHD zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014254
Physical Location & Seq
Reverse (-)
7330256 .. 7332100
1845 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G20990.1

Sequence Viewer

Length: 960 bp
ATGATGAGAACCAAATCCATAGTCATCAATTCCAATTCCAAGAACGATACTTCCACCATTTCCGCAACGACAGCTCTGAGACGTTCGGCCTCAAACACTACCCCCTCAGCTGCAGTGGTACGCACAAATGATCTTAACAAAAAACCGCGACCTCGGTCAGTAGAGTTCCCGGCATCTCCTCAACTAGTACAAGGTGAAGAGATGGTCCATTTCGGACATCCCCAACACGTGTTGGTTAAAGTTGAGTTGCCGGATATTTACACGTGCGCAGGGTGCAAAGAAGAGGGAGCAGGGGTTAGGTACGTGTGTCAAGAATGTGATTATCAGCTCCATGAGTTTTGTGCTTTGGCTCCTCCTCAACTCAAATCACACCCTTTTCATTACCAGCATCAACTTCTCTTCTTTGCCAAACCTGCGAAAGGAGGGATAGTAAAATCGAAATGTGACGTGTGTGGAAGATCACCAAAAGGTTACACTTTCAGATGCAAAGCTTGCAGTTTCCAAATGCATCCTGGCTGCGCCATGTTATCTCCTTCCCTCTCCTCTTCCTCCCTCCATCACCACCCTCTCCGCCTCCTCCCCTCTTCCTCAGCAGGTAGCACCACCGGCGGAGACTCCGGAGGATTCCTCTGCGGAGAGTGCAAGAGAGGTAAGCGAACGGGGAGGGTTTACCGTTGCACCGTCTGTGATTACCACTTGCATGCCGTTTGTGCCAAAGACGCCGCCGTGAATGGCCTCCGAGCAAACGGACATAAAGGGAGGGATAAGTCTCCGGCAGTTTTGGGAACGGCGGCAAGGTTGGCGTCGCAGGTTGTGATTGATTTTCTCGGTGGTATTATCGATGGTCTTGGCGAAGGTGTTGGTGAAGCTATTATAGACGGTGTGACTAGAGGTGGTGGTGGTGGCGGAGGCGGAAATGGCGGTGGCACTAGAGTAATCCCACGTGTCAGAGGAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

319

Amino Acids

33.67

Weight (kDa)

9.35

Isoelectric Point (pI)

44.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 72 - 115 5.4e-08 C1 domain
C1_2 PF03107 126 - 174 2.6e-07 C1 domain
C1_2 PF03107 185 - 238 7.7e-08 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014254)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20990
fragaria_vesca FvH4_5g26520
malus_domestica MD00G1031500.v1.1 MD06G1001400.v1.1
prunus_persica Prupe.5G002200_v2.0.a1
pyrus_communis pycom06g00150 pycom16g26300
rosa_chinensis RchiOBHm_Chr7g0217421
rosa_laevigata RLG00000002478
rosa_multiflora Rmu_sc0000145.1_g000014
rosa_roxburghii Rroxscaffold_3G00242090
rosa_rugosa Rorug07G0169000
rosa_samantha Rh7AG308700 Rh7BG299400 Rh7CG328100 Rh7DG308000
rosa_wichuraiana Rw7G026180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 268
Acc36I ACCTGC 3 cut(s) 421, 584, 799
AccII CGCG 1 cut(s) 148
AccIII TCCGGA 1 cut(s) 617
AcvI CACGTG 3 cut(s) 229, 264, 944
AcyI GRCGYC 2 cut(s) 720, 803
AfaI GTAC 3 cut(s) 120, 189, 302
AfiI CCNNNNNNNGG 1 cut(s) 419
AflIII ACRYGT 6 cut(s) 226, 228, 261, 303, 447, 943
AhlI ACTAGT 1 cut(s) 184
AjiI CACGTC 1 cut(s) 448
AjnI CCWGG 1 cut(s) 511
AloI GAACNNNNNNTCC 2 cut(s) 35, 67
AluBI AGCT 5 cut(s) 74, 110, 328, 491, 869
AluI AGCT 5 cut(s) 74, 110, 328, 491, 869
Alw26I GTCTC 3 cut(s) 73, 606, 774
Aor13HI TCCGGA 1 cut(s) 617
AoxI GGCC 2 cut(s) 87, 733
ApeKI GCWGC 2 cut(s) 110, 516
ArsI GACNNNNNNTTYG 1 cut(s) 38
AspLEI GCGC 2 cut(s) 269, 521
AspS9I GGNCC 1 cut(s) 205
AsuC2I CCSGG 1 cut(s) 170
AsuHPI GGTGA 4 cut(s) 206, 453, 551, 875
AvaII GGWCC 1 cut(s) 205
BaeI ACNNNNGTAYC 2 cut(s) 292, 325
BbrPI CACGTG 3 cut(s) 229, 264, 944
BbvCI CCTCAGC 2 cut(s) 106, 589
BbvI GCAGC 2 cut(s) 97, 503
BccI CCATC 3 cut(s) 196, 564, 836
BceAI ACGGC 3 cut(s) 689, 710, 804
BciT130I CCWGG 1 cut(s) 513
BcnI CCSGG 1 cut(s) 170
BcoDI GTCTC 3 cut(s) 73, 606, 774
BcuI ACTAGT 1 cut(s) 184
BfaI CTAG 3 cut(s) 185, 888, 930
BfmI CTRYAG 1 cut(s) 111
BfuAI ACCTGC 3 cut(s) 421, 584, 799
BisI GCNGC 4 cut(s) 111, 517, 723, 792
BlsI GCNGC 4 cut(s) 112, 518, 724, 793
Bme1390I CCNGG 2 cut(s) 170, 513
Bme18I GGWCC 1 cut(s) 205
BmgBI CACGTC 1 cut(s) 448
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 1 cut(s) 351
BmrFI CCNGG 2 cut(s) 170, 513
BmsI GCATC 4 cut(s) 182, 397, 473, 517
BoxI GACNNNNGTC 1 cut(s) 154
BplI GAGNNNNNCTC 2 cut(s) 612, 644
Bpu10I CCTNAGC 2 cut(s) 106, 589
BpuMI CCSGG 1 cut(s) 170
Bsa29I ATCGAT 1 cut(s) 840
BsaAI YACGTR 4 cut(s) 229, 264, 304, 944
BsaHI GRCGYC 2 cut(s) 720, 803
BsaJI CCNNGG 1 cut(s) 152
BsaWI WCCGGW 1 cut(s) 617
BsaXI ACNNNNNCTCC 4 cut(s) 279, 309, 414, 444
Bsc4I CCNNNNNNNGG 1 cut(s) 419
Bse118I RCCGGY 1 cut(s) 605
BseAI TCCGGA 1 cut(s) 617
BseBI CCWGG 1 cut(s) 513
BseCI ATCGAT 1 cut(s) 840
BseDI CCNNGG 1 cut(s) 152
BseGI GGATG 2 cut(s) 217, 508
BseLI CCNNNNNNNGG 1 cut(s) 419
BseMII CTCAG 3 cut(s) 68, 120, 603
BseRI GAGGAG 5 cut(s) 168, 342, 345, 532, 566
BseXI GCAGC 2 cut(s) 97, 503
Bsh1236I CGCG 1 cut(s) 148
BshFI GGCC 2 cut(s) 89, 735
BshVI ATCGAT 1 cut(s) 840
BsiSI CCGG 5 cut(s) 170, 251, 606, 618, 773
BslI CCNNNNNNNGG 1 cut(s) 419
BsmAI GTCTC 3 cut(s) 73, 606, 774
BsmBI CGTCTC 1 cut(s) 73
BsnI GGCC 2 cut(s) 89, 735
Bsp13I TCCGGA 1 cut(s) 617
Bsp143I GATC 2 cut(s) 130, 458
BspANI GGCC 2 cut(s) 89, 735
BspCNI CTCAG 3 cut(s) 69, 119, 602
BspDI ATCGAT 1 cut(s) 840
BspEI TCCGGA 1 cut(s) 617
BspFNI CGCG 1 cut(s) 148
BspLI GGNNCC 1 cut(s) 351
BspMAI CTGCAG 1 cut(s) 115
BspMI ACCTGC 3 cut(s) 421, 584, 799
BsrFI RCCGGY 1 cut(s) 605
BssAI RCCGGY 1 cut(s) 605
BssECI CCNNGG 1 cut(s) 152
BssMI GATC 2 cut(s) 130, 458
BssNI GRCGYC 2 cut(s) 720, 803
Bst2UI CCWGG 1 cut(s) 513
Bst4CI ACNGT 3 cut(s) 674, 682, 881
Bst6I CTCTTC 5 cut(s) 192, 276, 404, 550, 589
BstACI GRCGYC 2 cut(s) 720, 803
BstAPI GCANNNNNTGC 1 cut(s) 492
BstBAI YACGTR 4 cut(s) 229, 264, 304, 944
BstC8I GCNNGC 2 cut(s) 493, 702
BstDEI CTNAG 3 cut(s) 77, 106, 589
BstENI CCTNNNNNAGG 1 cut(s) 417
BstF5I GGATG 2 cut(s) 217, 508
BstFNI CGCG 1 cut(s) 148
BstHHI GCGC 2 cut(s) 269, 521
BstKTI GATC 2 cut(s) 133, 461
BstMAI GTCTC 3 cut(s) 73, 606, 774
BstMBI GATC 2 cut(s) 130, 458
BstNI CCWGG 1 cut(s) 513
BstNSI RCATGY 1 cut(s) 704
BstPAI GACNNNNGTC 1 cut(s) 154
BstSCI CCNGG 2 cut(s) 168, 511
BstSFI CTRYAG 1 cut(s) 111
BstUI CGCG 1 cut(s) 148
BstV1I GCAGC 2 cut(s) 97, 503
Bsu15I ATCGAT 1 cut(s) 840
BsuRI GGCC 2 cut(s) 89, 735
BsuTUI ATCGAT 1 cut(s) 840
BtrI CACGTC 1 cut(s) 448
BtsCI GGATG 2 cut(s) 217, 508
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 120
BveI ACCTGC 3 cut(s) 421, 584, 799
Cac8I GCNNGC 2 cut(s) 493, 702
CfoI GCGC 2 cut(s) 269, 521
Cfr10I RCCGGY 1 cut(s) 605
Cfr13I GGNCC 1 cut(s) 205
ClaI ATCGAT 1 cut(s) 840
CseI GACGC 2 cut(s) 728, 792
Csp6I GTAC 3 cut(s) 119, 188, 301
CviAII CATG 3 cut(s) 332, 523, 701
CviJI RGCY 9 cut(s) 74, 89, 110, 328, 350, 491, 516, 735, 869
CviKI_1 RGCY 9 cut(s) 74, 89, 110, 328, 350, 491, 516, 735, 869
CviQI GTAC 3 cut(s) 119, 188, 301
DdeI CTNAG 3 cut(s) 77, 106, 589
DpnI GATC 2 cut(s) 132, 460
DpnII GATC 2 cut(s) 130, 458
Eam1104I CTCTTC 5 cut(s) 192, 276, 404, 550, 589
EarI CTCTTC 5 cut(s) 192, 276, 404, 550, 589
EciI GGCGGA 4 cut(s) 560, 624, 921, 927
Eco47I GGWCC 1 cut(s) 205
Eco72I CACGTG 3 cut(s) 229, 264, 944
EcoNI CCTNNNNNAGG 1 cut(s) 417
EcoRII CCWGG 1 cut(s) 511
EcoT22I ATGCAT 1 cut(s) 510
Esp3I CGTCTC 1 cut(s) 73
FaeI CATG 3 cut(s) 335, 526, 704
FaiI YATR 6 cut(s) 20, 333, 524, 702, 753, 875
FatI CATG 3 cut(s) 331, 522, 700
Fnu4HI GCNGC 4 cut(s) 111, 517, 723, 792
FokI GGATG 2 cut(s) 204, 495
Fsp4HI GCNGC 4 cut(s) 111, 517, 723, 792
FspBI CTAG 3 cut(s) 185, 888, 930
FspI TGCGCA 1 cut(s) 268
GlaI GCGC 2 cut(s) 268, 520
GluI GCNGC 4 cut(s) 111, 517, 723, 792
HaeIII GGCC 2 cut(s) 89, 735
HapII CCGG 5 cut(s) 170, 251, 606, 618, 773
HgaI GACGC 2 cut(s) 728, 792
HhaI GCGC 2 cut(s) 269, 521
Hin1I GRCGYC 2 cut(s) 720, 803
Hin1II CATG 3 cut(s) 335, 526, 704
Hin6I GCGC 2 cut(s) 267, 519
HinP1I GCGC 2 cut(s) 267, 519
HindIII AAGCTT 1 cut(s) 489
HinfI GANTC 2 cut(s) 614, 624
HpaII CCGG 5 cut(s) 170, 251, 606, 618, 773
HphI GGTGA 4 cut(s) 206, 453, 551, 875
Hpy166II GTNNAC 1 cut(s) 670
Hpy188I TCNGA 5 cut(s) 78, 215, 482, 740, 950
Hpy188III TCNNGA 2 cut(s) 311, 618
Hpy8I GTNNAC 1 cut(s) 670
Hpy99I CGWCG 1 cut(s) 808
HpyAV CCTTC 2 cut(s) 543, 848
HpyCH4III ACNGT 3 cut(s) 674, 682, 881
HpyCH4IV ACGT 6 cut(s) 82, 228, 263, 303, 447, 943
HpyCH4V TGCA 8 cut(s) 113, 276, 486, 495, 508, 642, 678, 700
HpyF3I CTNAG 3 cut(s) 77, 106, 589
HpySE526I ACGT 6 cut(s) 82, 228, 263, 303, 447, 943
Hsp92I GRCGYC 2 cut(s) 720, 803
Hsp92II CATG 3 cut(s) 335, 526, 704
HspAI GCGC 2 cut(s) 267, 519
Kpn2I TCCGGA 1 cut(s) 617
Kzo9I GATC 2 cut(s) 130, 458
LmnI GCTCC 3 cut(s) 287, 333, 355
Lsp1109I GCAGC 2 cut(s) 97, 503
LweI GCATC 4 cut(s) 182, 397, 473, 517
MaeI CTAG 3 cut(s) 185, 888, 930
MaeII ACGT 6 cut(s) 82, 228, 263, 303, 447, 943
MaeIII GTNAC 3 cut(s) 443, 470, 883
MalI GATC 2 cut(s) 132, 460
MboI GATC 2 cut(s) 130, 458
MboII GAAGA 6 cut(s) 209, 293, 391, 468, 537, 576
MluCI AATT 2 cut(s) 28, 34
MlyI GAGTC 1 cut(s) 608
Mph1103I ATGCAT 1 cut(s) 510
MroI TCCGGA 1 cut(s) 617
MseI TTAA 2 cut(s) 135, 237
MslI CAYNNNNRTG 1 cut(s) 699
MspA1I CMGCKG 1 cut(s) 110
MspI CCGG 5 cut(s) 170, 251, 606, 618, 773
MspR9I CCNGG 2 cut(s) 170, 513
MvaI CCWGG 1 cut(s) 513
MvnI CGCG 1 cut(s) 148
NciI CCSGG 1 cut(s) 170
NdeII GATC 2 cut(s) 130, 458
NlaIII CATG 3 cut(s) 335, 526, 704
NlaIV GGNNCC 1 cut(s) 351
NmuCI GTSAC 2 cut(s) 443, 883
NsbI TGCGCA 1 cut(s) 268
NsiI ATGCAT 1 cut(s) 510
NspI RCATGY 1 cut(s) 704
PaeI GCATGC 1 cut(s) 704
PfeI GAWTC 1 cut(s) 624
PkrI GCNGC 4 cut(s) 112, 518, 724, 793
PleI GAGTC 1 cut(s) 608
PmaCI CACGTG 3 cut(s) 229, 264, 944
PmlI CACGTG 3 cut(s) 229, 264, 944
PpsI GAGTC 1 cut(s) 608
Ppu21I YACGTR 4 cut(s) 229, 264, 304, 944
PshAI GACNNNNGTC 1 cut(s) 154
Psp6I CCWGG 1 cut(s) 511
PspCI CACGTG 3 cut(s) 229, 264, 944
PspGI CCWGG 1 cut(s) 511
PspN4I GGNNCC 1 cut(s) 351
PspPI GGNCC 1 cut(s) 205
PstI CTGCAG 1 cut(s) 115
PvuII CAGCTG 1 cut(s) 110
RsaI GTAC 3 cut(s) 120, 189, 302
RsaNI GTAC 3 cut(s) 119, 188, 301
RseI CAYNNNNRTG 1 cut(s) 699
SaqAI TTAA 2 cut(s) 135, 237
SatI GCNGC 4 cut(s) 111, 517, 723, 792
Sau3AI GATC 2 cut(s) 130, 458
Sau96I GGNCC 1 cut(s) 205
SchI GAGTC 1 cut(s) 608
ScrFI CCNGG 2 cut(s) 170, 513
SfaNI GCATC 4 cut(s) 182, 397, 473, 517
SfcI CTRYAG 1 cut(s) 111
SgrAI CRCCGGYG 1 cut(s) 605
SinI GGWCC 1 cut(s) 205
SmiMI CAYNNNNRTG 1 cut(s) 699
SpeI ACTAGT 1 cut(s) 184
SphI GCATGC 1 cut(s) 704
Sse9I AATT 2 cut(s) 28, 34
SspMI CTAG 3 cut(s) 185, 888, 930
StyD4I CCNGG 2 cut(s) 168, 511
TaaI ACNGT 3 cut(s) 674, 682, 881
TaiI ACGT 6 cut(s) 85, 231, 266, 306, 450, 946
TaqI TCGA 2 cut(s) 437, 840
TaqII GACCGA 1 cut(s) 144
TasI AATT 2 cut(s) 28, 34
TatI WGTACW 1 cut(s) 187
TauI GCSGC 2 cut(s) 725, 794
TfiI GAWTC 1 cut(s) 624
Tru1I TTAA 2 cut(s) 135, 237
Tru9I TTAA 2 cut(s) 135, 237
TscAI CASTG 1 cut(s) 120
TseFI GTSAC 2 cut(s) 443, 883
TseI GCWGC 2 cut(s) 110, 516
Tsp45I GTSAC 2 cut(s) 443, 883
TspDTI ATGAA 1 cut(s) 368
TspGWI ACGGA 1 cut(s) 762
TspRI CASTG 1 cut(s) 120
VpaK11BI GGWCC 1 cut(s) 205
XagI CCTNNNNNAGG 1 cut(s) 417
XceI RCATGY 1 cut(s) 704
XcmI CCANNNNNNNNNTGG 1 cut(s) 509
XspI CTAG 3 cut(s) 185, 888, 930
Zsp2I ATGCAT 1 cut(s) 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.