Rh7DG308000

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0014254
Physical Location & Seq
Reverse (-)
36020927 .. 36023182
2256 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG308000.1

Sequence Viewer

Length: 1059 bp
ATGCAATGTACTCTGTGTATGGAGGAGCATCTTCTTTCTACTCTGTCCTCAAATAGTGCCAACTTTTGTAGCATAAATATTCGTCTTCTGTTTTGCAATTTGCACCACCAAATTAACAAAACAAGTCCATCATCGATAACCAGAGTGGGGGAGAGAGAAGAAAGACAAGAAAACACCACTATGATGATGAGCAACAACAACAAACCCACCTTGAAGAAGACAAGAACCTTTTCCCCCAAGAAATCAGATTCAATGCAAATCCCCACAGCTCAACCCATGGAATTTGTCCCTAAAAGGTGTGCTTCGCTAAAGTTTCCTGCCTCTCCTCAACTTGTTTTGGGGGAGGAGATGCTCCATTTCAGTCACCCACAACATCCTCTTTCCCATGTGAACTTACCGGACCTCTTCACCTGCGCTGGCTGTAAAGAGTACGGCGCAGGCAAGAGGTACACTTGTCAACGATGTGATTATCAACTTCATGATTTTTGTGCCTCAGCTCCTCCAGTTCTAAAGAGTCATCCCTTCCATTGCCAACACCAACTTGCTTTCTATTCTAAACCAGTAAAAGGAGGGATTGCACAATCGAAGTGTGATGTTTGCAGCAAGCCCATCAAAGGCTATGCTTTCAGATGCGGCGCAGGTTGTTTCCAGATGCATCCTTGCTGCGCCATGCTATCTTCGGAAATCAGCTTGCCATATCTCCATCCCCATACCCTAAGACTTTTACCTGCATCAAAAAGTGGCAGCGATCCGAGTTTCGTGTGTGGTGAGTGCAGGAGGAAGAGGTCGGGCACCAGAGTGTACCATTGCACCGTCTGTGACTACCATCTTCATGCGGTATGTGCAAAGAATGTGATCAATGGACTTCAAGAAAATGGCATCAAGAACCTAGAAAAGCCCAGCATGTTGGGGACTGCAGCTCGCCTGGCATCTCAAGTGGTCATCGAGTTCCTTGGGGGGTTGATGGAGGGGCTTGGGGAAGGTGTTGCAGAAGTCTTTGTCCAAAATGTCACCAGATCAGGAAGAGGCAATGGTAGAGGAAGAAATCCTACTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

352

Amino Acids

38.92

Weight (kDa)

9.02

Isoelectric Point (pI)

44.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 120 - 164 1.4e-08 C1 domain
C1_2 PF03107 234 - 282 1.5e-09 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014254)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20990
fragaria_vesca FvH4_5g26520
malus_domestica MD00G1031500.v1.1 MD06G1001400.v1.1
prunus_persica Prupe.5G002200_v2.0.a1
pyrus_communis pycom06g00150 pycom16g26300
rosa_chinensis RchiOBHm_Chr7g0217421
rosa_laevigata RLG00000002478
rosa_multiflora Rmu_sc0000145.1_g000014
rosa_roxburghii Rroxscaffold_3G00242090
rosa_rugosa Rorug07G0169000
rosa_samantha Rh7AG308700 Rh7BG299400 Rh7CG328100 Rh7DG308000
rosa_wichuraiana Rw7G026180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 419
Acc36I ACCTGC 3 cut(s) 419, 629, 736
AccB1I GGYRCC 1 cut(s) 791
AciI CCGC 2 cut(s) 633, 836
AclWI GGATC 1 cut(s) 743
AcsI RAATTY 1 cut(s) 281
AfaI GTAC 4 cut(s) 10, 431, 449, 803
AfiI CCNNNNNNNGG 3 cut(s) 147, 566, 614
AgsI TTSAA 3 cut(s) 214, 252, 869
AjnI CCWGG 1 cut(s) 924
AleI CACNNNNGTG 1 cut(s) 797
AluBI AGCT 4 cut(s) 269, 497, 690, 920
AluI AGCT 4 cut(s) 269, 497, 690, 920
AlwI GGATC 1 cut(s) 743
ApeKI GCWGC 4 cut(s) 600, 663, 744, 917
ApoI RAATTY 1 cut(s) 281
Asp700I GAANNNNTTC 1 cut(s) 229
AspLEI GCGC 4 cut(s) 416, 437, 638, 668
AspS9I GGNCC 1 cut(s) 400
AsuHPI GGTGA 4 cut(s) 356, 400, 779, 1003
AvaII GGWCC 1 cut(s) 400
BaeGI GKGCMC 1 cut(s) 794
BaeI ACNNNNGTAYC 2 cut(s) 439, 472
BanI GGYRCC 1 cut(s) 791
BarI GAAGNNNNNNTAC 1 cut(s) 1033
BbsI GAAGAC 2 cut(s) 77, 224
BbvCI CCTCAGC 1 cut(s) 493
BbvI GCAGC 4 cut(s) 612, 650, 756, 929
BccI CCATC 5 cut(s) 136, 617, 711, 834, 958
BceAI ACGGC 1 cut(s) 448
BciT130I CCWGG 1 cut(s) 926
BclI TGATCA 1 cut(s) 855
BfaI CTAG 1 cut(s) 890
BfmI CTRYAG 1 cut(s) 915
BfuAI ACCTGC 3 cut(s) 419, 629, 736
BisI GCNGC 5 cut(s) 601, 634, 664, 745, 918
BlsI GCNGC 5 cut(s) 602, 635, 665, 746, 919
Bme1390I CCNGG 1 cut(s) 926
Bme18I GGWCC 1 cut(s) 400
BmgT120I GGNCC 1 cut(s) 400
BmiI GGNNCC 1 cut(s) 793
BmrFI CCNGG 1 cut(s) 926
BmsI GCATC 8 cut(s) 37, 339, 620, 642, 664, 740, 888, 938
BpiI GAAGAC 2 cut(s) 77, 224
BpmI CTGGAG 1 cut(s) 486
Bpu10I CCTNAGC 1 cut(s) 493
BpuEI CTTGAG 1 cut(s) 918
Bsa29I ATCGAT 1 cut(s) 134
BsaJI CCNNGG 2 cut(s) 276, 952
BsaWI WCCGGW 1 cut(s) 397
Bsc4I CCNNNNNNNGG 3 cut(s) 147, 566, 614
Bse1I ACTGG 2 cut(s) 503, 560
Bse3DI GCAATG 4 cut(s) 11, 526, 805, 1036
BseBI CCWGG 1 cut(s) 926
BseCI ATCGAT 1 cut(s) 134
BseDI CCNNGG 2 cut(s) 276, 952
BseGI GGATG 4 cut(s) 373, 517, 655, 703
BseLI CCNNNNNNNGG 3 cut(s) 147, 566, 614
BseMI GCAATG 4 cut(s) 11, 526, 805, 1036
BseMII CTCAG 1 cut(s) 507
BseNI ACTGG 2 cut(s) 503, 560
BseRI GAGGAG 4 cut(s) 38, 315, 359, 489
BseSI GKGCMC 1 cut(s) 794
BseXI GCAGC 4 cut(s) 612, 650, 756, 929
BseYI CCCAGC 1 cut(s) 899
BsgI GTGCAG 1 cut(s) 793
BshNI GGYRCC 1 cut(s) 791
BshVI ATCGAT 1 cut(s) 134
BsiSI CCGG 1 cut(s) 398
BslFI GGGAC 2 cut(s) 272, 925
BslI CCNNNNNNNGG 3 cut(s) 147, 566, 614
BsmFI GGGAC 2 cut(s) 272, 925
Bsp1286I GDGCHC 1 cut(s) 794
Bsp143I GATC 3 cut(s) 748, 855, 1016
Bsp19I CCATGG 1 cut(s) 276
BspACI CCGC 2 cut(s) 633, 836
BspCNI CTCAG 1 cut(s) 506
BspDI ATCGAT 1 cut(s) 134
BspHI TCATGA 1 cut(s) 478
BspLI GGNNCC 1 cut(s) 793
BspMAI CTGCAG 1 cut(s) 919
BspMI ACCTGC 3 cut(s) 419, 629, 736
BspPI GGATC 1 cut(s) 743
BspT107I GGYRCC 1 cut(s) 791
BsrDI GCAATG 4 cut(s) 11, 526, 805, 1036
BsrI ACTGG 2 cut(s) 503, 560
BssECI CCNNGG 2 cut(s) 276, 952
BssMI GATC 3 cut(s) 748, 855, 1016
BssT1I CCWWGG 2 cut(s) 276, 952
Bst2UI CCWGG 1 cut(s) 926
Bst4CI ACNGT 1 cut(s) 814
Bst6I CTCTTC 3 cut(s) 410, 776, 1018
BstC8I GCNNGC 5 cut(s) 418, 439, 605, 692, 922
BstDEI CTNAG 2 cut(s) 493, 716
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 4 cut(s) 373, 517, 655, 703
BstHHI GCGC 4 cut(s) 416, 437, 638, 668
BstKTI GATC 3 cut(s) 751, 858, 1019
BstMBI GATC 3 cut(s) 748, 855, 1016
BstMWI GCNNNNNNNGC 2 cut(s) 842, 926
BstNI CCWGG 1 cut(s) 926
BstNSI RCATGY 1 cut(s) 907
BstSCI CCNGG 1 cut(s) 924
BstSFI CTRYAG 1 cut(s) 915
BstSLI GKGCMC 1 cut(s) 794
BstV1I GCAGC 4 cut(s) 612, 650, 756, 929
BstV2I GAAGAC 2 cut(s) 77, 224
BstXI CCANNNNNNTGG 1 cut(s) 907
Bsu15I ATCGAT 1 cut(s) 134
BsuTUI ATCGAT 1 cut(s) 134
BtgI CCRYGG 1 cut(s) 276
BtsCI GGATG 4 cut(s) 373, 517, 655, 703
BveI ACCTGC 3 cut(s) 419, 629, 736
Cac8I GCNNGC 5 cut(s) 418, 439, 605, 692, 922
CciI TCATGA 1 cut(s) 478
CfoI GCGC 4 cut(s) 416, 437, 638, 668
Cfr13I GGNCC 1 cut(s) 400
ClaI ATCGAT 1 cut(s) 134
Csp6I GTAC 4 cut(s) 9, 430, 448, 802
CviAII CATG 6 cut(s) 277, 386, 479, 670, 833, 904
CviJI RGCY 9 cut(s) 269, 420, 497, 607, 618, 690, 898, 920, 973
CviKI_1 RGCY 9 cut(s) 269, 420, 497, 607, 618, 690, 898, 920, 973
CviQI GTAC 4 cut(s) 9, 430, 448, 802
DdeI CTNAG 2 cut(s) 493, 716
DpnI GATC 3 cut(s) 750, 857, 1018
DpnII GATC 3 cut(s) 748, 855, 1016
Eam1104I CTCTTC 3 cut(s) 410, 776, 1018
EarI CTCTTC 3 cut(s) 410, 776, 1018
Eco130I CCWWGG 2 cut(s) 276, 952
Eco47I GGWCC 1 cut(s) 400
EcoRII CCWGG 1 cut(s) 924
EcoT14I CCWWGG 2 cut(s) 276, 952
EcoT22I ATGCAT 1 cut(s) 657
ErhI CCWWGG 2 cut(s) 276, 952
FaeI CATG 6 cut(s) 280, 389, 482, 673, 836, 907
FalI AAGNNNNNCTT 2 cut(s) 286, 318
FaqI GGGAC 2 cut(s) 272, 925
FatI CATG 6 cut(s) 276, 385, 478, 669, 832, 903
FbaI TGATCA 1 cut(s) 855
Fnu4HI GCNGC 5 cut(s) 601, 634, 664, 745, 918
FokI GGATG 4 cut(s) 360, 504, 642, 690
Fsp4HI GCNGC 5 cut(s) 601, 634, 664, 745, 918
FspBI CTAG 1 cut(s) 890
GlaI GCGC 4 cut(s) 415, 436, 637, 667
GluI GCNGC 5 cut(s) 601, 634, 664, 745, 918
GsaI CCCAGC 1 cut(s) 903
GsuI CTGGAG 1 cut(s) 486
HapII CCGG 1 cut(s) 398
HhaI GCGC 4 cut(s) 416, 437, 638, 668
Hin1II CATG 6 cut(s) 280, 389, 482, 673, 836, 907
Hin6I GCGC 4 cut(s) 414, 435, 636, 666
HinP1I GCGC 4 cut(s) 414, 435, 636, 666
HincII GTYRAC 1 cut(s) 458
HindII GTYRAC 1 cut(s) 458
HinfI GANTC 2 cut(s) 248, 514
HpaII CCGG 1 cut(s) 398
HphI GGTGA 4 cut(s) 356, 400, 779, 1003
Hpy166II GTNNAC 4 cut(s) 391, 450, 458, 802
Hpy188I TCNGA 4 cut(s) 247, 629, 682, 753
Hpy188III TCNNGA 5 cut(s) 479, 649, 869, 883, 1020
Hpy8I GTNNAC 4 cut(s) 391, 450, 458, 802
HpyAV CCTTC 2 cut(s) 532, 974
HpyCH4III ACNGT 1 cut(s) 814
HpyF10VI GCNNNNNNNGC 2 cut(s) 842, 926
HpyF3I CTNAG 2 cut(s) 493, 716
Hsp92II CATG 6 cut(s) 280, 389, 482, 673, 836, 907
HspAI GCGC 4 cut(s) 414, 435, 636, 666
Ksp22I TGATCA 1 cut(s) 855
Kzo9I GATC 3 cut(s) 748, 855, 1016
LmnI GCTCC 3 cut(s) 25, 357, 502
Lsp1109I GCAGC 4 cut(s) 612, 650, 756, 929
LweI GCATC 8 cut(s) 37, 339, 620, 642, 664, 740, 888, 938
MaeI CTAG 1 cut(s) 890
MaeIII GTNAC 3 cut(s) 362, 818, 1009
MalI GATC 3 cut(s) 750, 857, 1018
MboI GATC 3 cut(s) 748, 855, 1016
MhlI GDGCHC 1 cut(s) 794
MluCI AATT 3 cut(s) 97, 111, 281
MlyI GAGTC 1 cut(s) 523
Mph1103I ATGCAT 1 cut(s) 657
MroXI GAANNNNTTC 1 cut(s) 229
MseI TTAA 1 cut(s) 114
MslI CAYNNNNRTG 4 cut(s) 179, 182, 797, 831
MspI CCGG 1 cut(s) 398
MspR9I CCNGG 1 cut(s) 926
MvaI CCWGG 1 cut(s) 926
MwoI GCNNNNNNNGC 2 cut(s) 842, 926
NcoI CCATGG 1 cut(s) 276
NdeII GATC 3 cut(s) 748, 855, 1016
NlaIII CATG 6 cut(s) 280, 389, 482, 673, 836, 907
NlaIV GGNNCC 1 cut(s) 793
NmuCI GTSAC 3 cut(s) 362, 818, 1009
NsiI ATGCAT 1 cut(s) 657
NspI RCATGY 1 cut(s) 907
OliI CACNNNNGTG 1 cut(s) 797
PagI TCATGA 1 cut(s) 478
PaqCI CACCTGC 1 cut(s) 419
PdmI GAANNNNTTC 1 cut(s) 229
PfeI GAWTC 1 cut(s) 248
PkrI GCNGC 5 cut(s) 602, 635, 665, 746, 919
PleI GAGTC 1 cut(s) 522
PpsI GAGTC 1 cut(s) 522
Psp6I CCWGG 1 cut(s) 924
PspFI CCCAGC 1 cut(s) 899
PspGI CCWGG 1 cut(s) 924
PspN4I GGNNCC 1 cut(s) 793
PspPI GGNCC 1 cut(s) 400
PstI CTGCAG 1 cut(s) 919
RsaI GTAC 4 cut(s) 10, 431, 449, 803
RsaNI GTAC 4 cut(s) 9, 430, 448, 802
RseI CAYNNNNRTG 4 cut(s) 179, 182, 797, 831
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 5 cut(s) 601, 634, 664, 745, 918
Sau3AI GATC 3 cut(s) 748, 855, 1016
Sau96I GGNCC 1 cut(s) 400
SchI GAGTC 1 cut(s) 523
ScrFI CCNGG 1 cut(s) 926
SduI GDGCHC 1 cut(s) 794
SfaNI GCATC 8 cut(s) 37, 339, 620, 642, 664, 740, 888, 938
SfcI CTRYAG 1 cut(s) 915
SinI GGWCC 1 cut(s) 400
SmiMI CAYNNNNRTG 4 cut(s) 179, 182, 797, 831
SmlI CTYRAG 1 cut(s) 933
SmoI CTYRAG 1 cut(s) 933
Sse9I AATT 3 cut(s) 97, 111, 281
SsiI CCGC 2 cut(s) 633, 836
SspI AATATT 1 cut(s) 79
SspMI CTAG 1 cut(s) 890
StyD4I CCNGG 1 cut(s) 924
StyI CCWWGG 2 cut(s) 276, 952
TaaI ACNGT 1 cut(s) 814
TaqI TCGA 3 cut(s) 134, 584, 945
TasI AATT 3 cut(s) 97, 111, 281
TatI WGTACW 1 cut(s) 8
TauI GCSGC 1 cut(s) 636
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TseFI GTSAC 3 cut(s) 362, 818, 1009
TseI GCWGC 4 cut(s) 600, 663, 744, 917
Tsp45I GTSAC 3 cut(s) 362, 818, 1009
TspDTI ATGAA 2 cut(s) 467, 821
VpaK11BI GGWCC 1 cut(s) 400
XapI RAATTY 1 cut(s) 281
XceI RCATGY 1 cut(s) 907
XmnI GAANNNNTTC 1 cut(s) 229
XspI CTAG 1 cut(s) 890
Zsp2I ATGCAT 1 cut(s) 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.