Rw7G026180

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0014254
Physical Location & Seq
Reverse (-)
33181040 .. 33183052
2013 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G026180.1

Sequence Viewer

Length: 882 bp
ATGATGATGAGCAACAACAACAAACCCACCTTGAAGAAGACAAGAACCTTTTCCCCCAAGAAATCAGATTCAATGCAAATCCCCACAGCTCAACAACCCATGGAATTTGTCCCTAAAAGGTGTGCTTCGCTAAAGTTTCCTGCCTCTCCTCAACTTGTTTTGGGGGAGGAGATGCTCCATTTCAGTCACCCACAACATCCTCTTTCCCATGTGAACTTACCGGACCTCTTCACCTGCGCTGGCTGTAAAGAGTACGGCGCAGGCAAGAGGTACACTTGTCAACGATGTGATTATCAACTTCATGATTTTTGTGCCTCAGCTCCTCCAGTTCTAAAGAGTCATCCCTTCCATTGCCAACACCAACTTGCTTTCTATTCTAAACCAGTAAAAGGAGGGATTGCACAATCGAAGTGTGATGTTTGCAGCAAGCCCATCAAAGGCTATGCTTTCAGATGCGGCGCAGGTTGTTTCCAGATGCATCCTTGCTGCGCCATGCTATCTTCGGAAATCAGCTTGCCATATCTCCATCCCCATACCCTAAGACTTTTACCTGCATCAAAAAGTGGCAGCGATCCGAGTTTCGTGTGTGGTGAGTGCAGGAGGAAGAGGTCGGGCACCAGAGTGTACCATTGCACCGTCTGTGACTACCATCTTCATGCGGTATGTGCAAAGAATGTGATCAATGGACTTCAAGAAAATGGCATCAAGAACCTAGAAAAGCCCAGCATGTTGGGGACTGCAGCTCGCCTGGCATCTCAAGTGGTCATCGAGTTCCTTGGGGGGTTGATGGAGGGGCTTGGGGAAGGTGTTGCAGAAGTCTTTGTCCAAAATGTCACCAGATCAGGAAGAGGCAATGGTAGAGGAAGAAATCCTACTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

293

Amino Acids

32.2

Weight (kDa)

9.21

Isoelectric Point (pI)

42.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 61 - 105 1e-08 C1 domain
C1_2 PF03107 175 - 223 1.1e-09 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014254)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20990
fragaria_vesca FvH4_5g26520
malus_domestica MD00G1031500.v1.1 MD06G1001400.v1.1
prunus_persica Prupe.5G002200_v2.0.a1
pyrus_communis pycom06g00150 pycom16g26300
rosa_chinensis RchiOBHm_Chr7g0217421
rosa_laevigata RLG00000002478
rosa_multiflora Rmu_sc0000145.1_g000014
rosa_roxburghii Rroxscaffold_3G00242090
rosa_rugosa Rorug07G0169000
rosa_samantha Rh7AG308700 Rh7BG299400 Rh7CG328100 Rh7DG308000
rosa_wichuraiana Rw7G026180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 242
Acc36I ACCTGC 3 cut(s) 242, 452, 559
AccB1I GGYRCC 1 cut(s) 614
AciI CCGC 2 cut(s) 456, 659
AclWI GGATC 1 cut(s) 566
AcsI RAATTY 1 cut(s) 104
AfaI GTAC 3 cut(s) 254, 272, 626
AfiI CCNNNNNNNGG 2 cut(s) 389, 437
AgsI TTSAA 3 cut(s) 34, 72, 692
AjnI CCWGG 1 cut(s) 747
AleI CACNNNNGTG 1 cut(s) 620
AluBI AGCT 4 cut(s) 89, 320, 513, 743
AluI AGCT 4 cut(s) 89, 320, 513, 743
AlwI GGATC 1 cut(s) 566
ApeKI GCWGC 4 cut(s) 423, 486, 567, 740
ApoI RAATTY 1 cut(s) 104
Asp700I GAANNNNTTC 1 cut(s) 49
AspLEI GCGC 4 cut(s) 239, 260, 461, 491
AspS9I GGNCC 1 cut(s) 223
AsuHPI GGTGA 4 cut(s) 179, 223, 602, 826
AvaII GGWCC 1 cut(s) 223
BaeGI GKGCMC 1 cut(s) 617
BaeI ACNNNNGTAYC 2 cut(s) 262, 295
BanI GGYRCC 1 cut(s) 614
BarI GAAGNNNNNNTAC 1 cut(s) 856
BbsI GAAGAC 1 cut(s) 44
BbvCI CCTCAGC 1 cut(s) 316
BbvI GCAGC 4 cut(s) 435, 473, 579, 752
BccI CCATC 4 cut(s) 440, 534, 657, 781
BceAI ACGGC 1 cut(s) 271
BciT130I CCWGG 1 cut(s) 749
BclI TGATCA 1 cut(s) 678
BfaI CTAG 1 cut(s) 713
BfmI CTRYAG 1 cut(s) 738
BfuAI ACCTGC 3 cut(s) 242, 452, 559
BisI GCNGC 5 cut(s) 424, 457, 487, 568, 741
BlsI GCNGC 5 cut(s) 425, 458, 488, 569, 742
Bme1390I CCNGG 1 cut(s) 749
Bme18I GGWCC 1 cut(s) 223
BmgT120I GGNCC 1 cut(s) 223
BmiI GGNNCC 1 cut(s) 616
BmrFI CCNGG 1 cut(s) 749
BmsI GCATC 7 cut(s) 162, 443, 465, 487, 563, 711, 761
BpiI GAAGAC 1 cut(s) 44
BpmI CTGGAG 1 cut(s) 309
Bpu10I CCTNAGC 1 cut(s) 316
BpuEI CTTGAG 1 cut(s) 741
BsaJI CCNNGG 2 cut(s) 99, 775
BsaWI WCCGGW 1 cut(s) 220
Bsc4I CCNNNNNNNGG 2 cut(s) 389, 437
Bse1I ACTGG 2 cut(s) 326, 383
Bse3DI GCAATG 3 cut(s) 349, 628, 859
BseBI CCWGG 1 cut(s) 749
BseDI CCNNGG 2 cut(s) 99, 775
BseGI GGATG 4 cut(s) 196, 340, 478, 526
BseLI CCNNNNNNNGG 2 cut(s) 389, 437
BseMI GCAATG 3 cut(s) 349, 628, 859
BseMII CTCAG 1 cut(s) 330
BseNI ACTGG 2 cut(s) 326, 383
BseRI GAGGAG 3 cut(s) 138, 182, 312
BseSI GKGCMC 1 cut(s) 617
BseXI GCAGC 4 cut(s) 435, 473, 579, 752
BseYI CCCAGC 1 cut(s) 722
BsgI GTGCAG 1 cut(s) 616
BshNI GGYRCC 1 cut(s) 614
BsiSI CCGG 1 cut(s) 221
BslFI GGGAC 2 cut(s) 95, 748
BslI CCNNNNNNNGG 2 cut(s) 389, 437
BsmFI GGGAC 2 cut(s) 95, 748
Bsp1286I GDGCHC 1 cut(s) 617
Bsp143I GATC 3 cut(s) 571, 678, 839
Bsp19I CCATGG 1 cut(s) 99
BspACI CCGC 2 cut(s) 456, 659
BspCNI CTCAG 1 cut(s) 329
BspHI TCATGA 1 cut(s) 301
BspLI GGNNCC 1 cut(s) 616
BspMAI CTGCAG 1 cut(s) 742
BspMI ACCTGC 3 cut(s) 242, 452, 559
BspPI GGATC 1 cut(s) 566
BspT107I GGYRCC 1 cut(s) 614
BsrDI GCAATG 3 cut(s) 349, 628, 859
BsrI ACTGG 2 cut(s) 326, 383
BssECI CCNNGG 2 cut(s) 99, 775
BssMI GATC 3 cut(s) 571, 678, 839
BssT1I CCWWGG 2 cut(s) 99, 775
Bst2UI CCWGG 1 cut(s) 749
Bst4CI ACNGT 1 cut(s) 637
Bst6I CTCTTC 3 cut(s) 233, 599, 841
BstC8I GCNNGC 5 cut(s) 241, 262, 428, 515, 745
BstDEI CTNAG 2 cut(s) 316, 539
BstDSI CCRYGG 1 cut(s) 99
BstF5I GGATG 4 cut(s) 196, 340, 478, 526
BstHHI GCGC 4 cut(s) 239, 260, 461, 491
BstKTI GATC 3 cut(s) 574, 681, 842
BstMBI GATC 3 cut(s) 571, 678, 839
BstMWI GCNNNNNNNGC 2 cut(s) 665, 749
BstNI CCWGG 1 cut(s) 749
BstNSI RCATGY 1 cut(s) 730
BstSCI CCNGG 1 cut(s) 747
BstSFI CTRYAG 1 cut(s) 738
BstSLI GKGCMC 1 cut(s) 617
BstV1I GCAGC 4 cut(s) 435, 473, 579, 752
BstV2I GAAGAC 1 cut(s) 44
BstXI CCANNNNNNTGG 1 cut(s) 730
BtgI CCRYGG 1 cut(s) 99
BtsCI GGATG 4 cut(s) 196, 340, 478, 526
BveI ACCTGC 3 cut(s) 242, 452, 559
Cac8I GCNNGC 5 cut(s) 241, 262, 428, 515, 745
CciI TCATGA 1 cut(s) 301
CfoI GCGC 4 cut(s) 239, 260, 461, 491
Cfr13I GGNCC 1 cut(s) 223
Csp6I GTAC 3 cut(s) 253, 271, 625
CviAII CATG 6 cut(s) 100, 209, 302, 493, 656, 727
CviJI RGCY 9 cut(s) 89, 243, 320, 430, 441, 513, 721, 743, 796
CviKI_1 RGCY 9 cut(s) 89, 243, 320, 430, 441, 513, 721, 743, 796
CviQI GTAC 3 cut(s) 253, 271, 625
DdeI CTNAG 2 cut(s) 316, 539
DpnI GATC 3 cut(s) 573, 680, 841
DpnII GATC 3 cut(s) 571, 678, 839
Eam1104I CTCTTC 3 cut(s) 233, 599, 841
EarI CTCTTC 3 cut(s) 233, 599, 841
Eco130I CCWWGG 2 cut(s) 99, 775
Eco47I GGWCC 1 cut(s) 223
EcoRII CCWGG 1 cut(s) 747
EcoT14I CCWWGG 2 cut(s) 99, 775
EcoT22I ATGCAT 1 cut(s) 480
ErhI CCWWGG 2 cut(s) 99, 775
FaeI CATG 6 cut(s) 103, 212, 305, 496, 659, 730
FalI AAGNNNNNCTT 2 cut(s) 109, 141
FaqI GGGAC 2 cut(s) 95, 748
FatI CATG 6 cut(s) 99, 208, 301, 492, 655, 726
FbaI TGATCA 1 cut(s) 678
Fnu4HI GCNGC 5 cut(s) 424, 457, 487, 568, 741
FokI GGATG 4 cut(s) 183, 327, 465, 513
Fsp4HI GCNGC 5 cut(s) 424, 457, 487, 568, 741
FspBI CTAG 1 cut(s) 713
GlaI GCGC 4 cut(s) 238, 259, 460, 490
GluI GCNGC 5 cut(s) 424, 457, 487, 568, 741
GsaI CCCAGC 1 cut(s) 726
GsuI CTGGAG 1 cut(s) 309
HapII CCGG 1 cut(s) 221
HhaI GCGC 4 cut(s) 239, 260, 461, 491
Hin1II CATG 6 cut(s) 103, 212, 305, 496, 659, 730
Hin6I GCGC 4 cut(s) 237, 258, 459, 489
HinP1I GCGC 4 cut(s) 237, 258, 459, 489
HincII GTYRAC 1 cut(s) 281
HindII GTYRAC 1 cut(s) 281
HinfI GANTC 2 cut(s) 68, 337
HpaII CCGG 1 cut(s) 221
HphI GGTGA 4 cut(s) 179, 223, 602, 826
Hpy166II GTNNAC 4 cut(s) 214, 273, 281, 625
Hpy188I TCNGA 4 cut(s) 67, 452, 505, 576
Hpy188III TCNNGA 5 cut(s) 302, 472, 692, 706, 843
Hpy8I GTNNAC 4 cut(s) 214, 273, 281, 625
HpyAV CCTTC 2 cut(s) 355, 797
HpyCH4III ACNGT 1 cut(s) 637
HpyF10VI GCNNNNNNNGC 2 cut(s) 665, 749
HpyF3I CTNAG 2 cut(s) 316, 539
Hsp92II CATG 6 cut(s) 103, 212, 305, 496, 659, 730
HspAI GCGC 4 cut(s) 237, 258, 459, 489
Ksp22I TGATCA 1 cut(s) 678
Kzo9I GATC 3 cut(s) 571, 678, 839
LmnI GCTCC 2 cut(s) 180, 325
Lsp1109I GCAGC 4 cut(s) 435, 473, 579, 752
LweI GCATC 7 cut(s) 162, 443, 465, 487, 563, 711, 761
MaeI CTAG 1 cut(s) 713
MaeIII GTNAC 3 cut(s) 185, 641, 832
MalI GATC 3 cut(s) 573, 680, 841
MboI GATC 3 cut(s) 571, 678, 839
MboII GAAGA 8 cut(s) 46, 49, 220, 492, 616, 644, 858, 876
MhlI GDGCHC 1 cut(s) 617
MluCI AATT 1 cut(s) 104
MlyI GAGTC 1 cut(s) 346
Mph1103I ATGCAT 1 cut(s) 480
MroXI GAANNNNTTC 1 cut(s) 49
MslI CAYNNNNRTG 2 cut(s) 620, 654
MspI CCGG 1 cut(s) 221
MspR9I CCNGG 1 cut(s) 749
MvaI CCWGG 1 cut(s) 749
MwoI GCNNNNNNNGC 2 cut(s) 665, 749
NcoI CCATGG 1 cut(s) 99
NdeII GATC 3 cut(s) 571, 678, 839
NlaIII CATG 6 cut(s) 103, 212, 305, 496, 659, 730
NlaIV GGNNCC 1 cut(s) 616
NmuCI GTSAC 3 cut(s) 185, 641, 832
NsiI ATGCAT 1 cut(s) 480
NspI RCATGY 1 cut(s) 730
OliI CACNNNNGTG 1 cut(s) 620
PagI TCATGA 1 cut(s) 301
PaqCI CACCTGC 1 cut(s) 242
PdmI GAANNNNTTC 1 cut(s) 49
PfeI GAWTC 1 cut(s) 68
PkrI GCNGC 5 cut(s) 425, 458, 488, 569, 742
PleI GAGTC 1 cut(s) 345
PpsI GAGTC 1 cut(s) 345
Psp6I CCWGG 1 cut(s) 747
PspFI CCCAGC 1 cut(s) 722
PspGI CCWGG 1 cut(s) 747
PspN4I GGNNCC 1 cut(s) 616
PspPI GGNCC 1 cut(s) 223
PstI CTGCAG 1 cut(s) 742
RsaI GTAC 3 cut(s) 254, 272, 626
RsaNI GTAC 3 cut(s) 253, 271, 625
RseI CAYNNNNRTG 2 cut(s) 620, 654
SatI GCNGC 5 cut(s) 424, 457, 487, 568, 741
Sau3AI GATC 3 cut(s) 571, 678, 839
Sau96I GGNCC 1 cut(s) 223
SchI GAGTC 1 cut(s) 346
ScrFI CCNGG 1 cut(s) 749
SduI GDGCHC 1 cut(s) 617
SfaNI GCATC 7 cut(s) 162, 443, 465, 487, 563, 711, 761
SfcI CTRYAG 1 cut(s) 738
SinI GGWCC 1 cut(s) 223
SmiMI CAYNNNNRTG 2 cut(s) 620, 654
SmlI CTYRAG 1 cut(s) 756
SmoI CTYRAG 1 cut(s) 756
Sse9I AATT 1 cut(s) 104
SsiI CCGC 2 cut(s) 456, 659
SspMI CTAG 1 cut(s) 713
StyD4I CCNGG 1 cut(s) 747
StyI CCWWGG 2 cut(s) 99, 775
TaaI ACNGT 1 cut(s) 637
TaqI TCGA 2 cut(s) 407, 768
TasI AATT 1 cut(s) 104
TauI GCSGC 1 cut(s) 459
TfiI GAWTC 1 cut(s) 68
TseFI GTSAC 3 cut(s) 185, 641, 832
TseI GCWGC 4 cut(s) 423, 486, 567, 740
Tsp45I GTSAC 3 cut(s) 185, 641, 832
TspDTI ATGAA 2 cut(s) 290, 644
VpaK11BI GGWCC 1 cut(s) 223
XapI RAATTY 1 cut(s) 104
XceI RCATGY 1 cut(s) 730
XmnI GAANNNNTTC 1 cut(s) 49
XspI CTAG 1 cut(s) 713
Zsp2I ATGCAT 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.