Rroxscaffold_3G00242090

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0014254
Physical Location & Seq
Forward (+)
34474216 .. 34484164
9949 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00242090.1

Sequence Viewer

Length: 933 bp
ATGATGATGAGCAACAACAACAAACCCACCTTGAAGAAGACAAGAACCTTTTCCCCCAAGAAATCAGATTCAATGCAAATCCCCACCGCTCATCATCAACCCATGGAATTTGTCCCCCAAAGGTGTGCTTCACTAAAGTTTCCGACCTCTCCTCAACTTGTTTTGGGGGAGGAGACGCTCCATTTCAGTCATCCACATCCTCTTTCCCATGTGAACTTACCGGACCTCTTCACCTGCTCCGGCTGTAAAGAGTACGGCGCTGGCAAGAGGTACACTTGTCAACGATGTGATTATCAACTTCATGATTTTTGTGCCTCGGCTCCTCCAGTTCTAAAGAGTCATCCCTTCCATTGCCAACACCAACTTGCTTTCTATTCTAAACCAGTAAAAGGAGGGATTGCACAATCGAAGTGTGATGTTTGCAGCAAGCCTATCAAAGGCTATGCTTTCAGATGCGGCGCAGGTTGTTTCCAGATGCATCCTTGCTGCGCCATGCTATCTTCGGAAATCAGCTTGCCATATCTCCATCCCCATACCCTAAGACTTTTACCCGCATCAAAAAGTGGCAGCGATCCAAGTTTCGTGTGTGGTGAGTGCAGGAGGAAGAGGACGGGCACCAGAGTGTACCATTGCACCGTCTGTGACTACCATCTTCATGCGGTATGTGCAAAGAATATGATCAATGGACTTCACGAAAATGGCATCAAGAACCTAGAAAAGCCCAGCATGTTGGGGACTGCAGCTCGCCTGGCATCTCAAGTGGTCATCGAGTTCCTTGGGGGGTTGATGGAGGGTCTTGGGGAAGGTGTTGCAGAAGTCTTTGTCCAAAATGTCACCAGATCAGGAAGAGGCAATGATCTTGTAAACCTCTATATAAAGAGTCTATTATCAATGAGAGTACAGCTAATTCTCTCCCAAATATCGATTCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

310

Amino Acids

34.29

Weight (kDa)

9.08

Isoelectric Point (pI)

35.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 62 - 105 4.2e-09 C1 domain
C1_2 PF03107 175 - 223 1.4e-09 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014254)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20990
fragaria_vesca FvH4_5g26520
malus_domestica MD00G1031500.v1.1 MD06G1001400.v1.1
prunus_persica Prupe.5G002200_v2.0.a1
pyrus_communis pycom06g00150 pycom16g26300
rosa_chinensis RchiOBHm_Chr7g0217421
rosa_laevigata RLG00000002478
rosa_multiflora Rmu_sc0000145.1_g000014
rosa_roxburghii Rroxscaffold_3G00242090
rosa_rugosa Rorug07G0169000
rosa_samantha Rh7AG308700 Rh7BG299400 Rh7CG328100 Rh7DG308000
rosa_wichuraiana Rw7G026180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 242
Acc36I ACCTGC 2 cut(s) 242, 452
AccB1I GGYRCC 1 cut(s) 614
AccBSI CCGCTC 1 cut(s) 89
AciI CCGC 4 cut(s) 87, 456, 552, 659
AclWI GGATC 1 cut(s) 566
AcsI RAATTY 1 cut(s) 107
AfaI GTAC 4 cut(s) 254, 272, 626, 900
AfiI CCNNNNNNNGG 2 cut(s) 389, 437
AgsI TTSAA 2 cut(s) 34, 72
AjnI CCWGG 1 cut(s) 747
AjuI GAANNNNNNNTTGG 1 cut(s) 909
AleI CACNNNNGTG 1 cut(s) 620
AluBI AGCT 3 cut(s) 513, 743, 904
AluI AGCT 3 cut(s) 513, 743, 904
Alw26I GTCTC 1 cut(s) 167
AlwI GGATC 1 cut(s) 566
ApeKI GCWGC 4 cut(s) 423, 486, 567, 740
ApoI RAATTY 1 cut(s) 107
Asp700I GAANNNNTTC 1 cut(s) 49
AspLEI GCGC 3 cut(s) 260, 461, 491
AspS9I GGNCC 1 cut(s) 223
AsuHPI GGTGA 3 cut(s) 223, 602, 826
AvaII GGWCC 1 cut(s) 223
BaeGI GKGCMC 1 cut(s) 617
BaeI ACNNNNGTAYC 2 cut(s) 262, 295
BanI GGYRCC 1 cut(s) 614
BbsI GAAGAC 1 cut(s) 44
BbvI GCAGC 4 cut(s) 435, 473, 579, 752
BccI CCATC 3 cut(s) 534, 657, 781
BceAI ACGGC 1 cut(s) 271
BciT130I CCWGG 1 cut(s) 749
BclI TGATCA 1 cut(s) 678
BcoDI GTCTC 1 cut(s) 167
BfaI CTAG 1 cut(s) 713
BfmI CTRYAG 1 cut(s) 738
BfoI RGCGCY 1 cut(s) 261
BfuAI ACCTGC 2 cut(s) 242, 452
BisI GCNGC 5 cut(s) 424, 457, 487, 568, 741
BlsI GCNGC 5 cut(s) 425, 458, 488, 569, 742
Bme1390I CCNGG 1 cut(s) 749
Bme18I GGWCC 1 cut(s) 223
BmgT120I GGNCC 1 cut(s) 223
BmiI GGNNCC 2 cut(s) 321, 616
BmrFI CCNGG 1 cut(s) 749
BmsI GCATC 6 cut(s) 443, 465, 487, 563, 711, 761
BpiI GAAGAC 1 cut(s) 44
BpmI CTGGAG 1 cut(s) 309
BpuEI CTTGAG 1 cut(s) 741
Bsa29I ATCGAT 1 cut(s) 923
BsaJI CCNNGG 3 cut(s) 102, 315, 775
BsaWI WCCGGW 1 cut(s) 220
Bsc4I CCNNNNNNNGG 2 cut(s) 389, 437
Bse1I ACTGG 2 cut(s) 326, 383
Bse3DI GCAATG 3 cut(s) 349, 628, 859
BseBI CCWGG 1 cut(s) 749
BseCI ATCGAT 1 cut(s) 923
BseDI CCNNGG 3 cut(s) 102, 315, 775
BseGI GGATG 5 cut(s) 190, 196, 340, 478, 526
BseLI CCNNNNNNNGG 2 cut(s) 389, 437
BseMI GCAATG 3 cut(s) 349, 628, 859
BseNI ACTGG 2 cut(s) 326, 383
BseRI GAGGAG 3 cut(s) 141, 185, 312
BseSI GKGCMC 1 cut(s) 617
BseXI GCAGC 4 cut(s) 435, 473, 579, 752
BseYI CCCAGC 1 cut(s) 722
BsgI GTGCAG 1 cut(s) 616
BshNI GGYRCC 1 cut(s) 614
BshVI ATCGAT 1 cut(s) 923
BsiSI CCGG 2 cut(s) 221, 240
BslFI GGGAC 2 cut(s) 98, 748
BslI CCNNNNNNNGG 2 cut(s) 389, 437
BsmAI GTCTC 1 cut(s) 167
BsmBI CGTCTC 1 cut(s) 167
BsmFI GGGAC 2 cut(s) 98, 748
Bsp1286I GDGCHC 1 cut(s) 617
Bsp143I GATC 4 cut(s) 571, 678, 839, 856
Bsp19I CCATGG 1 cut(s) 102
BspACI CCGC 4 cut(s) 87, 456, 552, 659
BspDI ATCGAT 1 cut(s) 923
BspHI TCATGA 1 cut(s) 301
BspLI GGNNCC 2 cut(s) 321, 616
BspMAI CTGCAG 1 cut(s) 742
BspMI ACCTGC 2 cut(s) 242, 452
BspPI GGATC 1 cut(s) 566
BspT107I GGYRCC 1 cut(s) 614
BsrBI CCGCTC 1 cut(s) 89
BsrDI GCAATG 3 cut(s) 349, 628, 859
BsrI ACTGG 2 cut(s) 326, 383
BssECI CCNNGG 3 cut(s) 102, 315, 775
BssMI GATC 4 cut(s) 571, 678, 839, 856
BssT1I CCWWGG 2 cut(s) 102, 775
Bst2UI CCWGG 1 cut(s) 749
Bst4CI ACNGT 1 cut(s) 637
Bst6I CTCTTC 3 cut(s) 233, 599, 841
BstC8I GCNNGC 4 cut(s) 262, 428, 515, 745
BstDEI CTNAG 1 cut(s) 539
BstDSI CCRYGG 1 cut(s) 102
BstENI CCTNNNNNAGG 1 cut(s) 435
BstF5I GGATG 5 cut(s) 190, 196, 340, 478, 526
BstH2I RGCGCY 1 cut(s) 261
BstHHI GCGC 3 cut(s) 260, 461, 491
BstKTI GATC 4 cut(s) 574, 681, 842, 859
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 4 cut(s) 571, 678, 839, 856
BstMWI GCNNNNNNNGC 2 cut(s) 665, 749
BstNI CCWGG 1 cut(s) 749
BstNSI RCATGY 1 cut(s) 730
BstSCI CCNGG 1 cut(s) 747
BstSFI CTRYAG 1 cut(s) 738
BstSLI GKGCMC 1 cut(s) 617
BstV1I GCAGC 4 cut(s) 435, 473, 579, 752
BstV2I GAAGAC 1 cut(s) 44
BstXI CCANNNNNNTGG 1 cut(s) 730
Bsu15I ATCGAT 1 cut(s) 923
BsuTUI ATCGAT 1 cut(s) 923
BtgI CCRYGG 1 cut(s) 102
BtsCI GGATG 5 cut(s) 190, 196, 340, 478, 526
BveI ACCTGC 2 cut(s) 242, 452
Cac8I GCNNGC 4 cut(s) 262, 428, 515, 745
CciI TCATGA 1 cut(s) 301
CfoI GCGC 3 cut(s) 260, 461, 491
Cfr13I GGNCC 1 cut(s) 223
ClaI ATCGAT 1 cut(s) 923
CseI GACGC 1 cut(s) 184
Csp6I GTAC 4 cut(s) 253, 271, 625, 899
CviAII CATG 6 cut(s) 103, 209, 302, 493, 656, 727
CviJI RGCY 8 cut(s) 243, 320, 430, 441, 513, 721, 743, 904
CviKI_1 RGCY 8 cut(s) 243, 320, 430, 441, 513, 721, 743, 904
CviQI GTAC 4 cut(s) 253, 271, 625, 899
DdeI CTNAG 1 cut(s) 539
DpnI GATC 4 cut(s) 573, 680, 841, 858
DpnII GATC 4 cut(s) 571, 678, 839, 856
Eam1104I CTCTTC 3 cut(s) 233, 599, 841
EarI CTCTTC 3 cut(s) 233, 599, 841
Eco130I CCWWGG 2 cut(s) 102, 775
Eco47I GGWCC 1 cut(s) 223
EcoNI CCTNNNNNAGG 1 cut(s) 435
EcoRII CCWGG 1 cut(s) 747
EcoT14I CCWWGG 2 cut(s) 102, 775
EcoT22I ATGCAT 1 cut(s) 480
ErhI CCWWGG 2 cut(s) 102, 775
Esp3I CGTCTC 1 cut(s) 167
FaeI CATG 6 cut(s) 106, 212, 305, 496, 659, 730
FalI AAGNNNNNCTT 2 cut(s) 112, 144
FaqI GGGAC 2 cut(s) 98, 748
FatI CATG 6 cut(s) 102, 208, 301, 492, 655, 726
FauI CCCGC 1 cut(s) 559
FbaI TGATCA 1 cut(s) 678
Fnu4HI GCNGC 5 cut(s) 424, 457, 487, 568, 741
FokI GGATG 5 cut(s) 177, 183, 327, 465, 513
Fsp4HI GCNGC 5 cut(s) 424, 457, 487, 568, 741
FspBI CTAG 1 cut(s) 713
GlaI GCGC 3 cut(s) 259, 460, 490
GluI GCNGC 5 cut(s) 424, 457, 487, 568, 741
GsaI CCCAGC 1 cut(s) 726
GsuI CTGGAG 1 cut(s) 309
HaeII RGCGCY 1 cut(s) 261
HapII CCGG 2 cut(s) 221, 240
HgaI GACGC 1 cut(s) 184
HhaI GCGC 3 cut(s) 260, 461, 491
Hin1II CATG 6 cut(s) 106, 212, 305, 496, 659, 730
Hin6I GCGC 3 cut(s) 258, 459, 489
HinP1I GCGC 3 cut(s) 258, 459, 489
HincII GTYRAC 1 cut(s) 281
HindII GTYRAC 1 cut(s) 281
HinfI GANTC 4 cut(s) 68, 337, 880, 925
HpaII CCGG 2 cut(s) 221, 240
HphI GGTGA 3 cut(s) 223, 602, 826
Hpy166II GTNNAC 5 cut(s) 214, 273, 281, 625, 865
Hpy188I TCNGA 4 cut(s) 67, 144, 452, 505
Hpy188III TCNNGA 5 cut(s) 302, 472, 692, 706, 843
Hpy8I GTNNAC 5 cut(s) 214, 273, 281, 625, 865
HpyAV CCTTC 2 cut(s) 355, 797
HpyCH4III ACNGT 1 cut(s) 637
HpyCH4V TGCA 9 cut(s) 76, 401, 423, 478, 597, 633, 668, 740, 812
HpyF10VI GCNNNNNNNGC 2 cut(s) 665, 749
HpyF3I CTNAG 1 cut(s) 539
Hsp92II CATG 6 cut(s) 106, 212, 305, 496, 659, 730
HspAI GCGC 3 cut(s) 258, 459, 489
Ksp22I TGATCA 1 cut(s) 678
Kzo9I GATC 4 cut(s) 571, 678, 839, 856
LmnI GCTCC 3 cut(s) 183, 242, 325
Lsp1109I GCAGC 4 cut(s) 435, 473, 579, 752
LweI GCATC 6 cut(s) 443, 465, 487, 563, 711, 761
MaeI CTAG 1 cut(s) 713
MaeIII GTNAC 2 cut(s) 641, 832
MalI GATC 4 cut(s) 573, 680, 841, 858
MbiI CCGCTC 1 cut(s) 89
MboI GATC 4 cut(s) 571, 678, 839, 856
MboII GAAGA 7 cut(s) 46, 49, 220, 492, 616, 644, 858
MhlI GDGCHC 1 cut(s) 617
MluCI AATT 2 cut(s) 107, 906
MlyI GAGTC 2 cut(s) 346, 889
MmeI TCCRAC 1 cut(s) 167
Mph1103I ATGCAT 1 cut(s) 480
MroXI GAANNNNTTC 1 cut(s) 49
MslI CAYNNNNRTG 3 cut(s) 620, 654, 696
MspI CCGG 2 cut(s) 221, 240
MspR9I CCNGG 1 cut(s) 749
MvaI CCWGG 1 cut(s) 749
MwoI GCNNNNNNNGC 2 cut(s) 665, 749
NcoI CCATGG 1 cut(s) 102
NdeII GATC 4 cut(s) 571, 678, 839, 856
NlaIII CATG 6 cut(s) 106, 212, 305, 496, 659, 730
NlaIV GGNNCC 2 cut(s) 321, 616
NmeAIII GCCGAG 1 cut(s) 296
NmuCI GTSAC 2 cut(s) 641, 832
NsiI ATGCAT 1 cut(s) 480
NspI RCATGY 1 cut(s) 730
OliI CACNNNNGTG 1 cut(s) 620
PagI TCATGA 1 cut(s) 301
PaqCI CACCTGC 1 cut(s) 242
PdmI GAANNNNTTC 1 cut(s) 49
PfeI GAWTC 2 cut(s) 68, 925
PkrI GCNGC 5 cut(s) 425, 458, 488, 569, 742
PleI GAGTC 2 cut(s) 345, 888
PpsI GAGTC 2 cut(s) 345, 888
Psp6I CCWGG 1 cut(s) 747
PspFI CCCAGC 1 cut(s) 722
PspGI CCWGG 1 cut(s) 747
PspN4I GGNNCC 2 cut(s) 321, 616
PspPI GGNCC 1 cut(s) 223
PstI CTGCAG 1 cut(s) 742
RsaI GTAC 4 cut(s) 254, 272, 626, 900
RsaNI GTAC 4 cut(s) 253, 271, 625, 899
RseI CAYNNNNRTG 3 cut(s) 620, 654, 696
SatI GCNGC 5 cut(s) 424, 457, 487, 568, 741
Sau3AI GATC 4 cut(s) 571, 678, 839, 856
Sau96I GGNCC 1 cut(s) 223
SchI GAGTC 2 cut(s) 346, 889
ScrFI CCNGG 1 cut(s) 749
SduI GDGCHC 1 cut(s) 617
SfaNI GCATC 6 cut(s) 443, 465, 487, 563, 711, 761
SfcI CTRYAG 1 cut(s) 738
SinI GGWCC 1 cut(s) 223
SmiMI CAYNNNNRTG 3 cut(s) 620, 654, 696
SmlI CTYRAG 1 cut(s) 756
SmoI CTYRAG 1 cut(s) 756
Sse9I AATT 2 cut(s) 107, 906
SsiI CCGC 4 cut(s) 87, 456, 552, 659
SspMI CTAG 1 cut(s) 713
StyD4I CCNGG 1 cut(s) 747
StyI CCWWGG 2 cut(s) 102, 775
TaaI ACNGT 1 cut(s) 637
TaqI TCGA 3 cut(s) 407, 768, 923
TasI AATT 2 cut(s) 107, 906
TatI WGTACW 1 cut(s) 898
TauI GCSGC 1 cut(s) 459
TfiI GAWTC 2 cut(s) 68, 925
TseFI GTSAC 2 cut(s) 641, 832
TseI GCWGC 4 cut(s) 423, 486, 567, 740
Tsp45I GTSAC 2 cut(s) 641, 832
TspDTI ATGAA 2 cut(s) 290, 644
VpaK11BI GGWCC 1 cut(s) 223
XagI CCTNNNNNAGG 1 cut(s) 435
XapI RAATTY 1 cut(s) 107
XceI RCATGY 1 cut(s) 730
XmnI GAANNNNTTC 1 cut(s) 49
XspI CTAG 1 cut(s) 713
Zsp2I ATGCAT 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.