Prupe.5G002200_v2.0.a1

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0014254
Physical Location & Seq
Forward (+)
373928 .. 375462
1535 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G002200.1

Sequence Viewer

Length: 870 bp
ATGAAACAAACCATGATAAGCAATAAACCGTTGAGGAAGACAAGAACTTTTCTCCTTAAGAGGTCAGAATCAATGCAGCAACCCACAGAATTTGTCCCTAGAAAGTCTCCTGTGGTCGAATTCCCCACCTCTCCTCAACTGATATTTGGGGAGGAGATGCTTCACTTCGGTCACCCACAGCATCCTCTGTCCCAAGTTAACCTACCTGACCTTTTCACCTGTGCTGGCTGCAAAGAGTATGGTGCAGGCAAGAGGTTCGTCTGCCAGCAATGTGACTTTCAGCTACATGATTTTTGTGCCTTGGCTCCTCCTGCTCTAAATAGCCACCCCTTTCACTTCCAACACCAACTTGTTTTGTATTCTAAATCAGTCAAAGGAGGAATTGCACAATCGAAGTGTGATATTTGCCACAAGCCCGCCAAAGGCTATGCTTTCAGATGCAGCACATGTAGCTTCCAGATGCATCCTTGCTGTGCTATGCTGTCTTCAGAAATCAACTTGCAAACCCATCCTCATACCCTCAGGCTTTTGCCAGCAACGTCATCATCAAACGGGGACCCTAATAGTAGCAGTAGTTTTGTTTGTGGAGAATGCAGAAGGAAGAGGTCAGGGAGAGTGTACCACTGCACCGTCTGCAATTACCATGTTCATGCAGTTTGTGCTAAGGACATGATCAATGGGCTTCATGACAACGGCCACAAAGGCCGAGAGAAGCCGAGTGTGTTCGGGACTGCTGCTCGCCTTGCATCCCAAGTCGTCATTGAATTCATCGGCGGCCTCATTGAGGGGCTTGGGGAAGGAGTTGCTGAAGTCTTTGTTGACAATATTGCCAGATCAGGAAGAGCCAATGGCAGATCCAACAACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

290

Amino Acids

31.93

Weight (kDa)

9.01

Isoelectric Point (pI)

55.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014254)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20990
fragaria_vesca FvH4_5g26520
malus_domestica MD00G1031500.v1.1 MD06G1001400.v1.1
prunus_persica Prupe.5G002200_v2.0.a1
pyrus_communis pycom06g00150 pycom16g26300
rosa_chinensis RchiOBHm_Chr7g0217421
rosa_laevigata RLG00000002478
rosa_multiflora Rmu_sc0000145.1_g000014
rosa_roxburghii Rroxscaffold_3G00242090
rosa_rugosa Rorug07G0169000
rosa_samantha Rh7AG308700 Rh7BG299400 Rh7CG328100 Rh7DG308000
rosa_wichuraiana Rw7G026180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 417, 774
AclWI GGATC 1 cut(s) 849
AcoI YGGCCR 1 cut(s) 694
AcsI RAATTY 3 cut(s) 89, 119, 764
AcuI CTGAAG 2 cut(s) 471, 828
AfaI GTAC 1 cut(s) 620
AfiI CCNNNNNNNGG 2 cut(s) 422, 784
AflII CTTAAG 1 cut(s) 56
AflIII ACRYGT 1 cut(s) 446
AgsI TTSAA 1 cut(s) 764
AluBI AGCT 2 cut(s) 283, 453
AluI AGCT 2 cut(s) 283, 453
Alw26I GTCTC 1 cut(s) 111
AlwI GGATC 1 cut(s) 849
AoxI GGCC 3 cut(s) 694, 703, 775
ApeKI GCWGC 4 cut(s) 76, 228, 441, 734
ApoI RAATTY 3 cut(s) 89, 119, 764
AspS9I GGNCC 1 cut(s) 556
AsuHPI GGTGA 2 cut(s) 164, 208
AvaII GGWCC 1 cut(s) 556
AxyI CCTNAGG 1 cut(s) 521
BbsI GAAGAC 2 cut(s) 44, 477
BbvI GCAGC 4 cut(s) 88, 215, 453, 721
BccI CCATC 1 cut(s) 516
BceAI ACGGC 1 cut(s) 709
BcgI CGANNNNNNTGC 2 cut(s) 238, 272
BclI TGATCA 1 cut(s) 672
BcoDI GTCTC 1 cut(s) 111
BfaI CTAG 1 cut(s) 99
BfrI CTTAAG 1 cut(s) 56
BglI GCCNNNNNGGC 1 cut(s) 702
BisI GCNGC 5 cut(s) 77, 229, 442, 735, 775
BlsI GCNGC 5 cut(s) 78, 230, 443, 736, 776
Bme18I GGWCC 1 cut(s) 556
BmgT120I GGNCC 1 cut(s) 556
BmiI GGNNCC 3 cut(s) 306, 557, 558
BmsI GCATC 6 cut(s) 147, 190, 428, 450, 472, 755
BpiI GAAGAC 2 cut(s) 44, 477
Bpu10I CCTNAGC 1 cut(s) 663
BsaJI CCNNGG 1 cut(s) 300
Bsc4I CCNNNNNNNGG 2 cut(s) 422, 784
Bse21I CCTNAGG 1 cut(s) 521
Bse3DI GCAATG 1 cut(s) 275
BseDI CCNNGG 1 cut(s) 300
BseGI GGATG 4 cut(s) 181, 463, 508, 746
BseLI CCNNNNNNNGG 2 cut(s) 422, 784
BseMI GCAATG 1 cut(s) 275
BseMII CTCAG 1 cut(s) 535
BseRI GAGGAG 3 cut(s) 123, 167, 297
BseXI GCAGC 4 cut(s) 88, 215, 453, 721
BsgI GTGCAG 2 cut(s) 264, 610
BshFI GGCC 3 cut(s) 696, 705, 777
BslFI GGGAC 4 cut(s) 80, 175, 569, 742
BslI CCNNNNNNNGG 2 cut(s) 422, 784
BsmAI GTCTC 1 cut(s) 111
BsmFI GGGAC 4 cut(s) 80, 175, 569, 742
BsmI GAATGC 1 cut(s) 596
BsnI GGCC 3 cut(s) 696, 705, 777
Bsp143I GATC 3 cut(s) 672, 833, 854
BspACI CCGC 2 cut(s) 417, 774
BspANI GGCC 3 cut(s) 696, 705, 777
BspCNI CTCAG 1 cut(s) 534
BspHI TCATGA 1 cut(s) 685
BspLI GGNNCC 3 cut(s) 306, 557, 558
BspPI GGATC 1 cut(s) 849
BspQI GCTCTTC 1 cut(s) 835
BspTI CTTAAG 1 cut(s) 56
BsrDI GCAATG 1 cut(s) 275
BssECI CCNNGG 1 cut(s) 300
BssMI GATC 3 cut(s) 672, 833, 854
BssT1I CCWWGG 1 cut(s) 300
Bst4CI ACNGT 2 cut(s) 30, 631
Bst6I CTCTTC 2 cut(s) 596, 835
BstAFI CTTAAG 1 cut(s) 56
BstAPI GCANNNNNTGC 2 cut(s) 633, 659
BstC8I GCNNGC 6 cut(s) 226, 247, 266, 417, 534, 739
BstDEI CTNAG 2 cut(s) 521, 663
BstEII GGTNACC 1 cut(s) 170
BstENI CCTNNNNNAGG 1 cut(s) 782
BstF5I GGATG 4 cut(s) 181, 463, 508, 746
BstKTI GATC 3 cut(s) 675, 836, 857
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 3 cut(s) 672, 833, 854
BstMWI GCNNNNNNNGC 6 cut(s) 311, 450, 633, 659, 702, 743
BstNSI RCATGY 1 cut(s) 450
BstPI GGTNACC 1 cut(s) 170
BstV1I GCAGC 4 cut(s) 88, 215, 453, 721
BstV2I GAAGAC 2 cut(s) 44, 477
BstX2I RGATCY 1 cut(s) 854
BstYI RGATCY 1 cut(s) 854
Bsu36I CCTNAGG 1 cut(s) 521
BsuRI GGCC 3 cut(s) 696, 705, 777
BtsCI GGATG 4 cut(s) 181, 463, 508, 746
BtsI GCAGTG 1 cut(s) 622
BtsIMutI CAGTG 1 cut(s) 622
Cac8I GCNNGC 6 cut(s) 226, 247, 266, 417, 534, 739
CciI TCATGA 1 cut(s) 685
Cfr13I GGNCC 1 cut(s) 556
Csp6I GTAC 1 cut(s) 619
CspCI CAANNNNNGTGG 2 cut(s) 73, 108
CviAII CATG 7 cut(s) 13, 287, 447, 644, 650, 670, 686
CviQI GTAC 1 cut(s) 619
DdeI CTNAG 2 cut(s) 521, 663
DpnI GATC 3 cut(s) 674, 835, 856
DpnII GATC 3 cut(s) 672, 833, 854
EaeI YGGCCR 1 cut(s) 694
Eam1104I CTCTTC 2 cut(s) 596, 835
EarI CTCTTC 2 cut(s) 596, 835
Eco130I CCWWGG 1 cut(s) 300
Eco47I GGWCC 1 cut(s) 556
Eco57I CTGAAG 2 cut(s) 471, 828
Eco81I CCTNAGG 1 cut(s) 521
Eco91I GGTNACC 1 cut(s) 170
EcoNI CCTNNNNNAGG 1 cut(s) 782
EcoO109I RGGNCCY 1 cut(s) 556
EcoO65I GGTNACC 1 cut(s) 170
EcoRI GAATTC 2 cut(s) 119, 764
EcoT14I CCWWGG 1 cut(s) 300
EcoT22I ATGCAT 1 cut(s) 465
ErhI CCWWGG 1 cut(s) 300
FaeI CATG 7 cut(s) 16, 290, 450, 647, 653, 673, 689
FaqI GGGAC 4 cut(s) 80, 175, 569, 742
FatI CATG 7 cut(s) 12, 286, 446, 643, 649, 669, 685
FauI CCCGC 1 cut(s) 424
FbaI TGATCA 1 cut(s) 672
Fnu4HI GCNGC 5 cut(s) 77, 229, 442, 735, 775
FokI GGATG 4 cut(s) 168, 450, 495, 733
Fsp4HI GCNGC 5 cut(s) 77, 229, 442, 735, 775
FspBI CTAG 1 cut(s) 99
GluI GCNGC 5 cut(s) 77, 229, 442, 735, 775
HaeIII GGCC 3 cut(s) 696, 705, 777
Hin1II CATG 7 cut(s) 16, 290, 450, 647, 653, 673, 689
HincII GTYRAC 2 cut(s) 199, 820
HindII GTYRAC 2 cut(s) 199, 820
HinfI GANTC 1 cut(s) 68
HpaI GTTAAC 1 cut(s) 199
HphI GGTGA 2 cut(s) 164, 208
Hpy166II GTNNAC 3 cut(s) 199, 619, 820
Hpy188I TCNGA 3 cut(s) 67, 437, 490
Hpy188III TCNNGA 4 cut(s) 457, 686, 727, 837
Hpy8I GTNNAC 3 cut(s) 199, 619, 820
HpyAV CCTTC 2 cut(s) 591, 791
HpyCH4III ACNGT 2 cut(s) 30, 631
HpyCH4IV ACGT 1 cut(s) 539
HpyF10VI GCNNNNNNNGC 6 cut(s) 311, 450, 633, 659, 702, 743
HpyF3I CTNAG 2 cut(s) 521, 663
HpySE526I ACGT 1 cut(s) 539
Hsp92II CATG 7 cut(s) 16, 290, 450, 647, 653, 673, 689
KflI GGGWCCC 1 cut(s) 556
Ksp22I TGATCA 1 cut(s) 672
KspAI GTTAAC 1 cut(s) 199
Kzo9I GATC 3 cut(s) 672, 833, 854
LguI GCTCTTC 1 cut(s) 835
LmnI GCTCC 1 cut(s) 310
Lsp1109I GCAGC 4 cut(s) 88, 215, 453, 721
LweI GCATC 6 cut(s) 147, 190, 428, 450, 472, 755
MaeI CTAG 1 cut(s) 99
MaeII ACGT 1 cut(s) 539
MaeIII GTNAC 2 cut(s) 170, 272
MalI GATC 3 cut(s) 674, 835, 856
MboI GATC 3 cut(s) 672, 833, 854
MboII GAAGA 4 cut(s) 49, 477, 613, 852
MflI RGATCY 1 cut(s) 854
MluCI AATT 5 cut(s) 89, 119, 381, 637, 764
MmeI TCCRAC 1 cut(s) 364
Mph1103I ATGCAT 1 cut(s) 465
MseI TTAA 2 cut(s) 57, 198
MslI CAYNNNNRTG 1 cut(s) 648
MspCI CTTAAG 1 cut(s) 56
Mva1269I GAATGC 1 cut(s) 596
MwoI GCNNNNNNNGC 6 cut(s) 311, 450, 633, 659, 702, 743
NdeII GATC 3 cut(s) 672, 833, 854
NlaIII CATG 7 cut(s) 16, 290, 450, 647, 653, 673, 689
NlaIV GGNNCC 3 cut(s) 306, 557, 558
NmeAIII GCCGAG 2 cut(s) 731, 741
NmuCI GTSAC 2 cut(s) 170, 272
NsiI ATGCAT 1 cut(s) 465
NspI RCATGY 1 cut(s) 450
PagI TCATGA 1 cut(s) 685
PciI ACATGT 1 cut(s) 446
PciSI GCTCTTC 1 cut(s) 835
PctI GAATGC 1 cut(s) 596
PfeI GAWTC 1 cut(s) 68
PkrI GCNGC 5 cut(s) 78, 230, 443, 736, 776
PpuMI RGGWCCY 1 cut(s) 556
PscI ACATGT 1 cut(s) 446
Psp5II RGGWCCY 1 cut(s) 556
PspEI GGTNACC 1 cut(s) 170
PspN4I GGNNCC 3 cut(s) 306, 557, 558
PspPI GGNCC 1 cut(s) 556
PspPPI RGGWCCY 1 cut(s) 556
PsuI RGATCY 1 cut(s) 854
RsaI GTAC 1 cut(s) 620
RsaNI GTAC 1 cut(s) 619
RseI CAYNNNNRTG 1 cut(s) 648
SapI GCTCTTC 1 cut(s) 835
SaqAI TTAA 2 cut(s) 57, 198
SatI GCNGC 5 cut(s) 77, 229, 442, 735, 775
Sau3AI GATC 3 cut(s) 672, 833, 854
Sau96I GGNCC 1 cut(s) 556
SfaNI GCATC 6 cut(s) 147, 190, 428, 450, 472, 755
SfiI GGCCNNNNNGGCC 1 cut(s) 702
SinI GGWCC 1 cut(s) 556
SmiMI CAYNNNNRTG 1 cut(s) 648
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
Sse9I AATT 5 cut(s) 89, 119, 381, 637, 764
SsiI CCGC 2 cut(s) 417, 774
SspI AATATT 1 cut(s) 826
SspMI CTAG 1 cut(s) 99
StyI CCWWGG 1 cut(s) 300
TaaI ACNGT 2 cut(s) 30, 631
TaiI ACGT 1 cut(s) 542
TaqI TCGA 2 cut(s) 117, 392
TaqII GACCGA 1 cut(s) 158
TasI AATT 5 cut(s) 89, 119, 381, 637, 764
TauI GCSGC 1 cut(s) 777
TfiI GAWTC 1 cut(s) 68
Tru1I TTAA 2 cut(s) 57, 198
Tru9I TTAA 2 cut(s) 57, 198
TscAI CASTG 1 cut(s) 629
TseFI GTSAC 2 cut(s) 170, 272
TseI GCWGC 4 cut(s) 76, 228, 441, 734
Tsp45I GTSAC 2 cut(s) 170, 272
TspDTI ATGAA 4 cut(s) 17, 638, 674, 757
TspRI CASTG 1 cut(s) 629
Vha464I CTTAAG 1 cut(s) 56
VpaK11BI GGWCC 1 cut(s) 556
XagI CCTNNNNNAGG 1 cut(s) 782
XapI RAATTY 3 cut(s) 89, 119, 764
XceI RCATGY 1 cut(s) 450
XspI CTAG 1 cut(s) 99
Zsp2I ATGCAT 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.