RchiOBHm_Chr7g0217421

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0014254
Physical Location & Seq
Reverse (-)
35303966 .. 35305830
1865 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19458

Sequence Viewer

Length: 1047 bp
ATGGAGGGGCATCTTCTTTCTACTCTGTCCTCAAATAGTGCCAACTTTTGTAGCATAAATATTCGTCTTCTGTTTTGCAATTTGCACCACCAAATTAACAAAACAAATCCATCATCGATAACCAGAGTGGGGGAGAGAGAAGAAAGAAAAGAAAACACCACTATGATGATGAGCAACAACAACAAACCCACCTTGAAGAAGACAACAACCTTTTCCCCCAAGAAATCAGATTCAATGCAAATCCCCACCGCTCATCATCAACCCATGGAATTTGTCCCTAAAAGGTGTGCTTCGCTAAAGTTTCCTGCCTCTCCTCAACTTGTTTTGGGGGAGGAGATGCTCCATTTCAGTCACCCACAACATCCTCTTTCCCATGTGAACTTACCGGACCTCTTCACCTGCGCCGGCTGTAAAGAGTACGGCGCAGGCAAGAGGTACACTTGTCAACAATGTGATTATCAACTTCATGATTTTTGTGCCTCAGCTCCTCCAGTCCTAAAGAGTCATCCCTTCCATTGCCAACACCAACTTGCTTTCTATTCTAAACCAGTAAAAGGAGGGATTGCACAATCGAAGTGTGATGTTTGCAGCAAGCCCATCAAAGGCTATGCTTTCAGATGCGGCGCAGGTTGTTTCCAGATGCATCCTTGCTGCGCCATGCTATCTTCGGAAATCAGCTTGCCATATCTCCATCCCCATACCCTAAGACTTTTACCTGCATTAAAAAGTGGCAGCGATCCGAGTTTCGTGTGTGGTGAGTGTAGGAGGAAGAGGTCGGGCACCAGAGTGTACCATTGCACCGTCTGTGACTACCATCTTCATGCGGTATGTGCAAAGAATATGATCAATGGACTTCAAGAAAATGGCATCAAGAACCTAGAAAAGCCCAGCATGTTGGGGACTGCAGCTCGCCTGGCATCTCAAGTGGTCATCGAGTTCCTTGGGGGGTTGATGGAGGGGCTTGGGGAAGGTGTTGCAGAAGTCTTTGTCCAAAATGTCACCAGATCAGGAAGAGGCAATGGTAGAGGAAGAAATCCTACTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

348

Amino Acids

38.44

Weight (kDa)

9.07

Isoelectric Point (pI)

39.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 116 - 160 8.2e-09 C1 domain
C1_2 PF03107 230 - 278 1.3e-09 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014254)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20990
fragaria_vesca FvH4_5g26520
malus_domestica MD00G1031500.v1.1 MD06G1001400.v1.1
prunus_persica Prupe.5G002200_v2.0.a1
pyrus_communis pycom06g00150 pycom16g26300
rosa_chinensis RchiOBHm_Chr7g0217421
rosa_laevigata RLG00000002478
rosa_multiflora Rmu_sc0000145.1_g000014
rosa_roxburghii Rroxscaffold_3G00242090
rosa_rugosa Rorug07G0169000
rosa_samantha Rh7AG308700 Rh7BG299400 Rh7CG328100 Rh7DG308000
rosa_wichuraiana Rw7G026180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 407
Acc36I ACCTGC 3 cut(s) 407, 617, 724
AccB1I GGYRCC 1 cut(s) 779
AccBSI CCGCTC 1 cut(s) 251
AciI CCGC 3 cut(s) 249, 621, 824
AclWI GGATC 1 cut(s) 731
AcsI RAATTY 1 cut(s) 269
AfaI GTAC 3 cut(s) 419, 437, 791
AfiI CCNNNNNNNGG 3 cut(s) 129, 554, 602
AgsI TTSAA 3 cut(s) 196, 234, 857
AjnI CCWGG 1 cut(s) 912
AleI CACNNNNGTG 1 cut(s) 785
AluBI AGCT 3 cut(s) 485, 678, 908
AluI AGCT 3 cut(s) 485, 678, 908
AlwI GGATC 1 cut(s) 731
ApeKI GCWGC 4 cut(s) 588, 651, 732, 905
ApoI RAATTY 1 cut(s) 269
AspLEI GCGC 4 cut(s) 404, 425, 626, 656
AspS9I GGNCC 1 cut(s) 388
AsuHPI GGTGA 4 cut(s) 344, 388, 767, 991
AvaII GGWCC 1 cut(s) 388
BaeGI GKGCMC 1 cut(s) 782
BaeI ACNNNNGTAYC 2 cut(s) 427, 460
BanI GGYRCC 1 cut(s) 779
BarI GAAGNNNNNNTAC 1 cut(s) 1021
BbsI GAAGAC 2 cut(s) 59, 206
BbvCI CCTCAGC 1 cut(s) 481
BbvI GCAGC 4 cut(s) 600, 638, 744, 917
BccI CCATC 5 cut(s) 118, 605, 699, 822, 946
BceAI ACGGC 1 cut(s) 436
BciT130I CCWGG 1 cut(s) 914
BclI TGATCA 1 cut(s) 843
BfaI CTAG 1 cut(s) 878
BfmI CTRYAG 1 cut(s) 903
BfuAI ACCTGC 3 cut(s) 407, 617, 724
BisI GCNGC 5 cut(s) 589, 622, 652, 733, 906
BlsI GCNGC 5 cut(s) 590, 623, 653, 734, 907
Bme1390I CCNGG 1 cut(s) 914
Bme18I GGWCC 1 cut(s) 388
BmgT120I GGNCC 1 cut(s) 388
BmiI GGNNCC 1 cut(s) 781
BmrFI CCNGG 1 cut(s) 914
BmsI GCATC 7 cut(s) 19, 327, 608, 630, 652, 876, 926
BpiI GAAGAC 2 cut(s) 59, 206
BpmI CTGGAG 1 cut(s) 474
Bpu10I CCTNAGC 1 cut(s) 481
BpuEI CTTGAG 1 cut(s) 906
Bsa29I ATCGAT 1 cut(s) 116
BsaJI CCNNGG 2 cut(s) 264, 940
BsaWI WCCGGW 1 cut(s) 385
Bsc4I CCNNNNNNNGG 3 cut(s) 129, 554, 602
Bse118I RCCGGY 1 cut(s) 404
Bse1I ACTGG 2 cut(s) 491, 548
Bse3DI GCAATG 3 cut(s) 514, 793, 1024
BseBI CCWGG 1 cut(s) 914
BseCI ATCGAT 1 cut(s) 116
BseDI CCNNGG 2 cut(s) 264, 940
BseGI GGATG 4 cut(s) 361, 505, 643, 691
BseLI CCNNNNNNNGG 3 cut(s) 129, 554, 602
BseMI GCAATG 3 cut(s) 514, 793, 1024
BseMII CTCAG 1 cut(s) 495
BseNI ACTGG 2 cut(s) 491, 548
BseRI GAGGAG 3 cut(s) 303, 347, 477
BseSI GKGCMC 1 cut(s) 782
BseXI GCAGC 4 cut(s) 600, 638, 744, 917
BseYI CCCAGC 1 cut(s) 887
BshNI GGYRCC 1 cut(s) 779
BshVI ATCGAT 1 cut(s) 116
BsiSI CCGG 2 cut(s) 386, 405
BslFI GGGAC 2 cut(s) 260, 913
BslI CCNNNNNNNGG 3 cut(s) 129, 554, 602
BsmFI GGGAC 2 cut(s) 260, 913
Bsp1286I GDGCHC 1 cut(s) 782
Bsp143I GATC 3 cut(s) 736, 843, 1004
Bsp19I CCATGG 1 cut(s) 264
BspACI CCGC 3 cut(s) 249, 621, 824
BspCNI CTCAG 1 cut(s) 494
BspDI ATCGAT 1 cut(s) 116
BspHI TCATGA 1 cut(s) 466
BspLI GGNNCC 1 cut(s) 781
BspMAI CTGCAG 1 cut(s) 907
BspMI ACCTGC 3 cut(s) 407, 617, 724
BspPI GGATC 1 cut(s) 731
BspT107I GGYRCC 1 cut(s) 779
BsrBI CCGCTC 1 cut(s) 251
BsrDI GCAATG 3 cut(s) 514, 793, 1024
BsrFI RCCGGY 1 cut(s) 404
BsrI ACTGG 2 cut(s) 491, 548
BssAI RCCGGY 1 cut(s) 404
BssECI CCNNGG 2 cut(s) 264, 940
BssMI GATC 3 cut(s) 736, 843, 1004
BssT1I CCWWGG 2 cut(s) 264, 940
Bst2UI CCWGG 1 cut(s) 914
Bst4CI ACNGT 1 cut(s) 802
Bst6I CTCTTC 3 cut(s) 398, 764, 1006
BstC8I GCNNGC 5 cut(s) 406, 427, 593, 680, 910
BstDEI CTNAG 2 cut(s) 481, 704
BstDSI CCRYGG 1 cut(s) 264
BstF5I GGATG 4 cut(s) 361, 505, 643, 691
BstHHI GCGC 4 cut(s) 404, 425, 626, 656
BstKTI GATC 3 cut(s) 739, 846, 1007
BstMBI GATC 3 cut(s) 736, 843, 1004
BstMWI GCNNNNNNNGC 2 cut(s) 830, 914
BstNI CCWGG 1 cut(s) 914
BstNSI RCATGY 1 cut(s) 895
BstSCI CCNGG 1 cut(s) 912
BstSFI CTRYAG 1 cut(s) 903
BstSLI GKGCMC 1 cut(s) 782
BstV1I GCAGC 4 cut(s) 600, 638, 744, 917
BstV2I GAAGAC 2 cut(s) 59, 206
BstXI CCANNNNNNTGG 1 cut(s) 895
Bsu15I ATCGAT 1 cut(s) 116
BsuTUI ATCGAT 1 cut(s) 116
BtgI CCRYGG 1 cut(s) 264
BtsCI GGATG 4 cut(s) 361, 505, 643, 691
BveI ACCTGC 3 cut(s) 407, 617, 724
Cac8I GCNNGC 5 cut(s) 406, 427, 593, 680, 910
CciI TCATGA 1 cut(s) 466
CfoI GCGC 4 cut(s) 404, 425, 626, 656
Cfr10I RCCGGY 1 cut(s) 404
Cfr13I GGNCC 1 cut(s) 388
ClaI ATCGAT 1 cut(s) 116
Csp6I GTAC 3 cut(s) 418, 436, 790
CviAII CATG 6 cut(s) 265, 374, 467, 658, 821, 892
CviJI RGCY 8 cut(s) 408, 485, 595, 606, 678, 886, 908, 961
CviKI_1 RGCY 8 cut(s) 408, 485, 595, 606, 678, 886, 908, 961
CviQI GTAC 3 cut(s) 418, 436, 790
DdeI CTNAG 2 cut(s) 481, 704
DpnI GATC 3 cut(s) 738, 845, 1006
DpnII GATC 3 cut(s) 736, 843, 1004
Eam1104I CTCTTC 3 cut(s) 398, 764, 1006
EarI CTCTTC 3 cut(s) 398, 764, 1006
Eco130I CCWWGG 2 cut(s) 264, 940
Eco47I GGWCC 1 cut(s) 388
EcoRII CCWGG 1 cut(s) 912
EcoT14I CCWWGG 2 cut(s) 264, 940
EcoT22I ATGCAT 1 cut(s) 645
ErhI CCWWGG 2 cut(s) 264, 940
FaeI CATG 6 cut(s) 268, 377, 470, 661, 824, 895
FalI AAGNNNNNCTT 2 cut(s) 274, 306
FaqI GGGAC 2 cut(s) 260, 913
FatI CATG 6 cut(s) 264, 373, 466, 657, 820, 891
FbaI TGATCA 1 cut(s) 843
Fnu4HI GCNGC 5 cut(s) 589, 622, 652, 733, 906
FokI GGATG 4 cut(s) 348, 492, 630, 678
Fsp4HI GCNGC 5 cut(s) 589, 622, 652, 733, 906
FspBI CTAG 1 cut(s) 878
GlaI GCGC 4 cut(s) 403, 424, 625, 655
GluI GCNGC 5 cut(s) 589, 622, 652, 733, 906
GsaI CCCAGC 1 cut(s) 891
GsuI CTGGAG 1 cut(s) 474
HapII CCGG 2 cut(s) 386, 405
HhaI GCGC 4 cut(s) 404, 425, 626, 656
Hin1II CATG 6 cut(s) 268, 377, 470, 661, 824, 895
Hin6I GCGC 4 cut(s) 402, 423, 624, 654
HinP1I GCGC 4 cut(s) 402, 423, 624, 654
HincII GTYRAC 1 cut(s) 446
HindII GTYRAC 1 cut(s) 446
HinfI GANTC 2 cut(s) 230, 502
HpaII CCGG 2 cut(s) 386, 405
HphI GGTGA 4 cut(s) 344, 388, 767, 991
Hpy166II GTNNAC 4 cut(s) 379, 438, 446, 790
Hpy188I TCNGA 4 cut(s) 229, 617, 670, 741
Hpy188III TCNNGA 5 cut(s) 467, 637, 857, 871, 1008
Hpy8I GTNNAC 4 cut(s) 379, 438, 446, 790
HpyAV CCTTC 2 cut(s) 520, 962
HpyCH4III ACNGT 1 cut(s) 802
HpyF10VI GCNNNNNNNGC 2 cut(s) 830, 914
HpyF3I CTNAG 2 cut(s) 481, 704
Hsp92II CATG 6 cut(s) 268, 377, 470, 661, 824, 895
HspAI GCGC 4 cut(s) 402, 423, 624, 654
KroI GCCGGC 1 cut(s) 404
KroNI GCCGGC 1 cut(s) 406
Ksp22I TGATCA 1 cut(s) 843
Kzo9I GATC 3 cut(s) 736, 843, 1004
LmnI GCTCC 2 cut(s) 345, 490
Lsp1109I GCAGC 4 cut(s) 600, 638, 744, 917
LweI GCATC 7 cut(s) 19, 327, 608, 630, 652, 876, 926
MaeI CTAG 1 cut(s) 878
MaeIII GTNAC 3 cut(s) 350, 806, 997
MalI GATC 3 cut(s) 738, 845, 1006
MbiI CCGCTC 1 cut(s) 251
MboI GATC 3 cut(s) 736, 843, 1004
MhlI GDGCHC 1 cut(s) 782
MluCI AATT 3 cut(s) 79, 93, 269
MlyI GAGTC 1 cut(s) 511
Mph1103I ATGCAT 1 cut(s) 645
MroNI GCCGGC 1 cut(s) 404
MseI TTAA 2 cut(s) 96, 722
MslI CAYNNNNRTG 4 cut(s) 161, 164, 785, 819
MspI CCGG 2 cut(s) 386, 405
MspR9I CCNGG 1 cut(s) 914
MvaI CCWGG 1 cut(s) 914
MwoI GCNNNNNNNGC 2 cut(s) 830, 914
NaeI GCCGGC 1 cut(s) 406
NcoI CCATGG 1 cut(s) 264
NdeII GATC 3 cut(s) 736, 843, 1004
NgoMIV GCCGGC 1 cut(s) 404
NlaIII CATG 6 cut(s) 268, 377, 470, 661, 824, 895
NlaIV GGNNCC 1 cut(s) 781
NmuCI GTSAC 3 cut(s) 350, 806, 997
NsiI ATGCAT 1 cut(s) 645
NspI RCATGY 1 cut(s) 895
OliI CACNNNNGTG 1 cut(s) 785
PagI TCATGA 1 cut(s) 466
PaqCI CACCTGC 1 cut(s) 407
PdiI GCCGGC 1 cut(s) 406
PfeI GAWTC 1 cut(s) 230
PkrI GCNGC 5 cut(s) 590, 623, 653, 734, 907
PleI GAGTC 1 cut(s) 510
PpsI GAGTC 1 cut(s) 510
Psp6I CCWGG 1 cut(s) 912
PspFI CCCAGC 1 cut(s) 887
PspGI CCWGG 1 cut(s) 912
PspN4I GGNNCC 1 cut(s) 781
PspPI GGNCC 1 cut(s) 388
PstI CTGCAG 1 cut(s) 907
RsaI GTAC 3 cut(s) 419, 437, 791
RsaNI GTAC 3 cut(s) 418, 436, 790
RseI CAYNNNNRTG 4 cut(s) 161, 164, 785, 819
SaqAI TTAA 2 cut(s) 96, 722
SatI GCNGC 5 cut(s) 589, 622, 652, 733, 906
Sau3AI GATC 3 cut(s) 736, 843, 1004
Sau96I GGNCC 1 cut(s) 388
SchI GAGTC 1 cut(s) 511
ScrFI CCNGG 1 cut(s) 914
SduI GDGCHC 1 cut(s) 782
SfaNI GCATC 7 cut(s) 19, 327, 608, 630, 652, 876, 926
SfcI CTRYAG 1 cut(s) 903
SinI GGWCC 1 cut(s) 388
SmiMI CAYNNNNRTG 4 cut(s) 161, 164, 785, 819
SmlI CTYRAG 1 cut(s) 921
SmoI CTYRAG 1 cut(s) 921
Sse9I AATT 3 cut(s) 79, 93, 269
SsiI CCGC 3 cut(s) 249, 621, 824
SspI AATATT 1 cut(s) 61
SspMI CTAG 1 cut(s) 878
StyD4I CCNGG 1 cut(s) 912
StyI CCWWGG 2 cut(s) 264, 940
TaaI ACNGT 1 cut(s) 802
TaqI TCGA 3 cut(s) 116, 572, 933
TasI AATT 3 cut(s) 79, 93, 269
TauI GCSGC 1 cut(s) 624
TfiI GAWTC 1 cut(s) 230
Tru1I TTAA 2 cut(s) 96, 722
Tru9I TTAA 2 cut(s) 96, 722
TseFI GTSAC 3 cut(s) 350, 806, 997
TseI GCWGC 4 cut(s) 588, 651, 732, 905
Tsp45I GTSAC 3 cut(s) 350, 806, 997
TspDTI ATGAA 2 cut(s) 455, 809
VpaK11BI GGWCC 1 cut(s) 388
XapI RAATTY 1 cut(s) 269
XceI RCATGY 1 cut(s) 895
XspI CTAG 1 cut(s) 878
Zsp2I ATGCAT 1 cut(s) 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.