Rh7AG308700

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0014254
Physical Location & Seq
Reverse (-)
34614355 .. 34616620
2266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG308700.1

Sequence Viewer

Length: 1065 bp
ATGCAATGTACTCTGTGTATGGAGGGGCATCTTCTTTCTACTCTGTCCTCAAATAGTGCCAACTTTTGTAGCATAAATATTCGTCTTCTGTTTTGCAATTTGCACCACCAAATTAACAAAACAAGTCCATCATCGATAACCAGAGTGGGGGAGAGAGAAGAAAGAAAAGAAAACACCACTATGATGATGAGCAACAACAACAAACCCACCTTGAAGAAGACAACAACCTTTTCCCCCAAGAAATCAGATTCAATGCAAATCCCCACCGCTCATCATCAACCCATGGAATTTGTCCCTAAAAGGTGTGCTTCGCTAAAGTTTCCTGCCTCTCCTCAACTTGTTTTGGGGGAGGAGATGCTCCATTTCAGTCACCCACAACATCCTCTTTCCCATGTGAACTTACCGGACCTCTTCACCTGCGCCGGCTGTAAAGAGTACGGCGCAGGCAAGAGGTACACTTGTCAACGATGTGATTATCAACTTCATGATTTTTGTGCCTCAGCTCCTCCAGTTCTAAAGAATCATCCCTTCCATTGCCAACACCAACTTGCTTTCTATTCTAAACCAGTAAAAGGAGGGATTGCACAATCGAAGTGTGATGTTTGCAGCAAGCCCATCAAAGGCTATGCTTTCAGATGCGGCGCAGGTTGTTTCCAGATGCATCCTTGCTGCGCCATGCTATCTTCAGAAATCAGCTTGCCATATCTCCATCCCCATACCCTAAGACTTTTACCTGCATCAAAAAGTGGCAGCGATCCGAGTTTCGTGTGTGGTGAGTGCAGGAGGAAGAGGTCGGGCACCAGAGTGTACCATTGCACCGTCTGTGACTACCATCTTCATGCGGTATGTGCAAAGAATATGATCAATGGACTTCAAGAAAATGGCATCAAGAACCTAGAAAAGCCCAGCATGTTGGGGACTGCAGCTCGCCTGGCATCTCAAGTGGTCATCGAGTTCCTTGGGGGGTTGATGGAGGGGCTTGGGGAAGGTGTTGCAGAAGTCTTTGTCCAAAATGTCACCAGATCAGGAAGAGGCAATGGTAGAGGAAGAAATCCTACTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

354

Amino Acids

39.13

Weight (kDa)

9.07

Isoelectric Point (pI)

42.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 122 - 166 1.4e-08 C1 domain
C1_2 PF03107 236 - 284 1.5e-09 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014254)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20990
fragaria_vesca FvH4_5g26520
malus_domestica MD00G1031500.v1.1 MD06G1001400.v1.1
prunus_persica Prupe.5G002200_v2.0.a1
pyrus_communis pycom06g00150 pycom16g26300
rosa_chinensis RchiOBHm_Chr7g0217421
rosa_laevigata RLG00000002478
rosa_multiflora Rmu_sc0000145.1_g000014
rosa_roxburghii Rroxscaffold_3G00242090
rosa_rugosa Rorug07G0169000
rosa_samantha Rh7AG308700 Rh7BG299400 Rh7CG328100 Rh7DG308000
rosa_wichuraiana Rw7G026180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 425
Acc36I ACCTGC 3 cut(s) 425, 635, 742
AccB1I GGYRCC 1 cut(s) 797
AccBSI CCGCTC 1 cut(s) 269
AciI CCGC 3 cut(s) 267, 639, 842
AclWI GGATC 1 cut(s) 749
AcsI RAATTY 1 cut(s) 287
AcuI CTGAAG 1 cut(s) 669
AfaI GTAC 4 cut(s) 10, 437, 455, 809
AfiI CCNNNNNNNGG 3 cut(s) 147, 572, 620
AgsI TTSAA 3 cut(s) 214, 252, 875
AjnI CCWGG 1 cut(s) 930
AleI CACNNNNGTG 1 cut(s) 803
AluBI AGCT 3 cut(s) 503, 696, 926
AluI AGCT 3 cut(s) 503, 696, 926
AlwI GGATC 1 cut(s) 749
ApeKI GCWGC 4 cut(s) 606, 669, 750, 923
ApoI RAATTY 1 cut(s) 287
AspLEI GCGC 4 cut(s) 422, 443, 644, 674
AspS9I GGNCC 1 cut(s) 406
AsuHPI GGTGA 4 cut(s) 362, 406, 785, 1009
AvaII GGWCC 1 cut(s) 406
BaeGI GKGCMC 1 cut(s) 800
BaeI ACNNNNGTAYC 2 cut(s) 445, 478
BanI GGYRCC 1 cut(s) 797
BarI GAAGNNNNNNTAC 1 cut(s) 1039
BbsI GAAGAC 2 cut(s) 77, 224
BbvCI CCTCAGC 1 cut(s) 499
BbvI GCAGC 4 cut(s) 618, 656, 762, 935
BccI CCATC 5 cut(s) 136, 623, 717, 840, 964
BceAI ACGGC 1 cut(s) 454
BciT130I CCWGG 1 cut(s) 932
BclI TGATCA 1 cut(s) 861
BfaI CTAG 1 cut(s) 896
BfmI CTRYAG 1 cut(s) 921
BfuAI ACCTGC 3 cut(s) 425, 635, 742
BisI GCNGC 5 cut(s) 607, 640, 670, 751, 924
BlsI GCNGC 5 cut(s) 608, 641, 671, 752, 925
Bme1390I CCNGG 1 cut(s) 932
Bme18I GGWCC 1 cut(s) 406
BmgT120I GGNCC 1 cut(s) 406
BmiI GGNNCC 1 cut(s) 799
BmrFI CCNGG 1 cut(s) 932
BmsI GCATC 8 cut(s) 37, 345, 626, 648, 670, 746, 894, 944
BpiI GAAGAC 2 cut(s) 77, 224
BpmI CTGGAG 1 cut(s) 492
Bpu10I CCTNAGC 1 cut(s) 499
BpuEI CTTGAG 1 cut(s) 924
Bsa29I ATCGAT 1 cut(s) 134
BsaJI CCNNGG 2 cut(s) 282, 958
BsaWI WCCGGW 1 cut(s) 403
Bsc4I CCNNNNNNNGG 3 cut(s) 147, 572, 620
Bse118I RCCGGY 1 cut(s) 422
Bse1I ACTGG 2 cut(s) 509, 566
Bse3DI GCAATG 4 cut(s) 11, 532, 811, 1042
BseBI CCWGG 1 cut(s) 932
BseCI ATCGAT 1 cut(s) 134
BseDI CCNNGG 2 cut(s) 282, 958
BseGI GGATG 4 cut(s) 379, 523, 661, 709
BseLI CCNNNNNNNGG 3 cut(s) 147, 572, 620
BseMI GCAATG 4 cut(s) 11, 532, 811, 1042
BseMII CTCAG 1 cut(s) 513
BseNI ACTGG 2 cut(s) 509, 566
BseRI GAGGAG 3 cut(s) 321, 365, 495
BseSI GKGCMC 1 cut(s) 800
BseXI GCAGC 4 cut(s) 618, 656, 762, 935
BseYI CCCAGC 1 cut(s) 905
BsgI GTGCAG 1 cut(s) 799
BshNI GGYRCC 1 cut(s) 797
BshVI ATCGAT 1 cut(s) 134
BsiSI CCGG 2 cut(s) 404, 423
BslFI GGGAC 2 cut(s) 278, 931
BslI CCNNNNNNNGG 3 cut(s) 147, 572, 620
BsmFI GGGAC 2 cut(s) 278, 931
Bsp1286I GDGCHC 1 cut(s) 800
Bsp143I GATC 3 cut(s) 754, 861, 1022
Bsp19I CCATGG 1 cut(s) 282
BspACI CCGC 3 cut(s) 267, 639, 842
BspCNI CTCAG 1 cut(s) 512
BspDI ATCGAT 1 cut(s) 134
BspHI TCATGA 1 cut(s) 484
BspLI GGNNCC 1 cut(s) 799
BspMAI CTGCAG 1 cut(s) 925
BspMI ACCTGC 3 cut(s) 425, 635, 742
BspPI GGATC 1 cut(s) 749
BspT107I GGYRCC 1 cut(s) 797
BsrBI CCGCTC 1 cut(s) 269
BsrDI GCAATG 4 cut(s) 11, 532, 811, 1042
BsrFI RCCGGY 1 cut(s) 422
BsrI ACTGG 2 cut(s) 509, 566
BssAI RCCGGY 1 cut(s) 422
BssECI CCNNGG 2 cut(s) 282, 958
BssMI GATC 3 cut(s) 754, 861, 1022
BssT1I CCWWGG 2 cut(s) 282, 958
Bst2UI CCWGG 1 cut(s) 932
Bst4CI ACNGT 1 cut(s) 820
Bst6I CTCTTC 3 cut(s) 416, 782, 1024
BstC8I GCNNGC 5 cut(s) 424, 445, 611, 698, 928
BstDEI CTNAG 2 cut(s) 499, 722
BstDSI CCRYGG 1 cut(s) 282
BstF5I GGATG 4 cut(s) 379, 523, 661, 709
BstHHI GCGC 4 cut(s) 422, 443, 644, 674
BstKTI GATC 3 cut(s) 757, 864, 1025
BstMBI GATC 3 cut(s) 754, 861, 1022
BstMWI GCNNNNNNNGC 2 cut(s) 848, 932
BstNI CCWGG 1 cut(s) 932
BstNSI RCATGY 1 cut(s) 913
BstSCI CCNGG 1 cut(s) 930
BstSFI CTRYAG 1 cut(s) 921
BstSLI GKGCMC 1 cut(s) 800
BstV1I GCAGC 4 cut(s) 618, 656, 762, 935
BstV2I GAAGAC 2 cut(s) 77, 224
BstXI CCANNNNNNTGG 1 cut(s) 913
Bsu15I ATCGAT 1 cut(s) 134
BsuTUI ATCGAT 1 cut(s) 134
BtgI CCRYGG 1 cut(s) 282
BtsCI GGATG 4 cut(s) 379, 523, 661, 709
BveI ACCTGC 3 cut(s) 425, 635, 742
Cac8I GCNNGC 5 cut(s) 424, 445, 611, 698, 928
CciI TCATGA 1 cut(s) 484
CfoI GCGC 4 cut(s) 422, 443, 644, 674
Cfr10I RCCGGY 1 cut(s) 422
Cfr13I GGNCC 1 cut(s) 406
ClaI ATCGAT 1 cut(s) 134
Csp6I GTAC 4 cut(s) 9, 436, 454, 808
CviAII CATG 6 cut(s) 283, 392, 485, 676, 839, 910
CviJI RGCY 8 cut(s) 426, 503, 613, 624, 696, 904, 926, 979
CviKI_1 RGCY 8 cut(s) 426, 503, 613, 624, 696, 904, 926, 979
CviQI GTAC 4 cut(s) 9, 436, 454, 808
DdeI CTNAG 2 cut(s) 499, 722
DpnI GATC 3 cut(s) 756, 863, 1024
DpnII GATC 3 cut(s) 754, 861, 1022
Eam1104I CTCTTC 3 cut(s) 416, 782, 1024
EarI CTCTTC 3 cut(s) 416, 782, 1024
Eco130I CCWWGG 2 cut(s) 282, 958
Eco47I GGWCC 1 cut(s) 406
Eco57I CTGAAG 1 cut(s) 669
EcoRII CCWGG 1 cut(s) 930
EcoT14I CCWWGG 2 cut(s) 282, 958
EcoT22I ATGCAT 1 cut(s) 663
ErhI CCWWGG 2 cut(s) 282, 958
FaeI CATG 6 cut(s) 286, 395, 488, 679, 842, 913
FalI AAGNNNNNCTT 2 cut(s) 292, 324
FaqI GGGAC 2 cut(s) 278, 931
FatI CATG 6 cut(s) 282, 391, 484, 675, 838, 909
FbaI TGATCA 1 cut(s) 861
Fnu4HI GCNGC 5 cut(s) 607, 640, 670, 751, 924
FokI GGATG 4 cut(s) 366, 510, 648, 696
Fsp4HI GCNGC 5 cut(s) 607, 640, 670, 751, 924
FspBI CTAG 1 cut(s) 896
GlaI GCGC 4 cut(s) 421, 442, 643, 673
GluI GCNGC 5 cut(s) 607, 640, 670, 751, 924
GsaI CCCAGC 1 cut(s) 909
GsuI CTGGAG 1 cut(s) 492
HapII CCGG 2 cut(s) 404, 423
HhaI GCGC 4 cut(s) 422, 443, 644, 674
Hin1II CATG 6 cut(s) 286, 395, 488, 679, 842, 913
Hin6I GCGC 4 cut(s) 420, 441, 642, 672
HinP1I GCGC 4 cut(s) 420, 441, 642, 672
HincII GTYRAC 1 cut(s) 464
HindII GTYRAC 1 cut(s) 464
HinfI GANTC 2 cut(s) 248, 520
HpaII CCGG 2 cut(s) 404, 423
HphI GGTGA 4 cut(s) 362, 406, 785, 1009
Hpy166II GTNNAC 4 cut(s) 397, 456, 464, 808
Hpy188I TCNGA 4 cut(s) 247, 635, 688, 759
Hpy188III TCNNGA 5 cut(s) 485, 655, 875, 889, 1026
Hpy8I GTNNAC 4 cut(s) 397, 456, 464, 808
HpyAV CCTTC 2 cut(s) 538, 980
HpyCH4III ACNGT 1 cut(s) 820
HpyF10VI GCNNNNNNNGC 2 cut(s) 848, 932
HpyF3I CTNAG 2 cut(s) 499, 722
Hsp92II CATG 6 cut(s) 286, 395, 488, 679, 842, 913
HspAI GCGC 4 cut(s) 420, 441, 642, 672
KroI GCCGGC 1 cut(s) 422
KroNI GCCGGC 1 cut(s) 424
Ksp22I TGATCA 1 cut(s) 861
Kzo9I GATC 3 cut(s) 754, 861, 1022
LmnI GCTCC 2 cut(s) 363, 508
Lsp1109I GCAGC 4 cut(s) 618, 656, 762, 935
LweI GCATC 8 cut(s) 37, 345, 626, 648, 670, 746, 894, 944
MaeI CTAG 1 cut(s) 896
MaeIII GTNAC 3 cut(s) 368, 824, 1015
MalI GATC 3 cut(s) 756, 863, 1024
MbiI CCGCTC 1 cut(s) 269
MboI GATC 3 cut(s) 754, 861, 1022
MhlI GDGCHC 1 cut(s) 800
MluCI AATT 3 cut(s) 97, 111, 287
Mph1103I ATGCAT 1 cut(s) 663
MroNI GCCGGC 1 cut(s) 422
MseI TTAA 1 cut(s) 114
MslI CAYNNNNRTG 4 cut(s) 179, 182, 803, 837
MspI CCGG 2 cut(s) 404, 423
MspR9I CCNGG 1 cut(s) 932
MvaI CCWGG 1 cut(s) 932
MwoI GCNNNNNNNGC 2 cut(s) 848, 932
NaeI GCCGGC 1 cut(s) 424
NcoI CCATGG 1 cut(s) 282
NdeII GATC 3 cut(s) 754, 861, 1022
NgoMIV GCCGGC 1 cut(s) 422
NlaIII CATG 6 cut(s) 286, 395, 488, 679, 842, 913
NlaIV GGNNCC 1 cut(s) 799
NmuCI GTSAC 3 cut(s) 368, 824, 1015
NsiI ATGCAT 1 cut(s) 663
NspI RCATGY 1 cut(s) 913
OliI CACNNNNGTG 1 cut(s) 803
PagI TCATGA 1 cut(s) 484
PaqCI CACCTGC 1 cut(s) 425
PdiI GCCGGC 1 cut(s) 424
PfeI GAWTC 2 cut(s) 248, 520
PkrI GCNGC 5 cut(s) 608, 641, 671, 752, 925
Psp6I CCWGG 1 cut(s) 930
PspFI CCCAGC 1 cut(s) 905
PspGI CCWGG 1 cut(s) 930
PspN4I GGNNCC 1 cut(s) 799
PspPI GGNCC 1 cut(s) 406
PstI CTGCAG 1 cut(s) 925
RsaI GTAC 4 cut(s) 10, 437, 455, 809
RsaNI GTAC 4 cut(s) 9, 436, 454, 808
RseI CAYNNNNRTG 4 cut(s) 179, 182, 803, 837
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 5 cut(s) 607, 640, 670, 751, 924
Sau3AI GATC 3 cut(s) 754, 861, 1022
Sau96I GGNCC 1 cut(s) 406
ScrFI CCNGG 1 cut(s) 932
SduI GDGCHC 1 cut(s) 800
SfaNI GCATC 8 cut(s) 37, 345, 626, 648, 670, 746, 894, 944
SfcI CTRYAG 1 cut(s) 921
SinI GGWCC 1 cut(s) 406
SmiMI CAYNNNNRTG 4 cut(s) 179, 182, 803, 837
SmlI CTYRAG 1 cut(s) 939
SmoI CTYRAG 1 cut(s) 939
Sse9I AATT 3 cut(s) 97, 111, 287
SsiI CCGC 3 cut(s) 267, 639, 842
SspI AATATT 1 cut(s) 79
SspMI CTAG 1 cut(s) 896
StyD4I CCNGG 1 cut(s) 930
StyI CCWWGG 2 cut(s) 282, 958
TaaI ACNGT 1 cut(s) 820
TaqI TCGA 3 cut(s) 134, 590, 951
TasI AATT 3 cut(s) 97, 111, 287
TatI WGTACW 1 cut(s) 8
TauI GCSGC 1 cut(s) 642
TfiI GAWTC 2 cut(s) 248, 520
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TseFI GTSAC 3 cut(s) 368, 824, 1015
TseI GCWGC 4 cut(s) 606, 669, 750, 923
Tsp45I GTSAC 3 cut(s) 368, 824, 1015
TspDTI ATGAA 2 cut(s) 473, 827
VpaK11BI GGWCC 1 cut(s) 406
XapI RAATTY 1 cut(s) 287
XceI RCATGY 1 cut(s) 913
XspI CTAG 1 cut(s) 896
Zsp2I ATGCAT 1 cut(s) 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.