Rh7CG328100

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0014254
Physical Location & Seq
Reverse (-)
35975440 .. 35977571
2132 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG328100.1

Sequence Viewer

Length: 1065 bp
ATGCAATGTACTCTGTGTATGGAGGGGCATCTTCTTTCTACTCTGTCCTCAAATAGTGCCAACTTTTGTAGCATAAATATTCGTCTTCTGTTTTGCAATTTGCACCACCAAATTAACAAAACAAGTCCATCATCGATAACCAGAGTGGGGGAGAGAGAAGAAAGAAAAGAAAACACCACTATGATGATGAGCAACAACAACAAACCCACCTTGAAGAAGACAACAACCTTTTCCCCCAAGAAATCAGATTCAATGCAAATCCCCACCGCTCATCATCAACCCATGGAATTTGTCCCTAAAAGGTGTGCTTCGCTAAAGTTTCCTGCCTCTCCTCAACTTGTTTTGGGGGAGGAGATGCTCCATTTCAGCCACCCACAACATCCTCTTTCCCATGTGAACTTACCGGACCTCTTCACCTGCGCCGGCTGTAAAGAGTACGGCGCAGGCAAGAGGTACACTTGTCAACGATGTGATTATCAACTTCATGATTTTTGTGCCTCAGCTCCTCCAGTTCTAAAGAATCATCCCTTCCATTGCCAACACCAACTTGCTTTCTATTCTAAACCAGTAAAAGGAGGGATTGCACAATCGAAGTGTGATGTTTGCAGCAAGCCCATCAAAGGCTATGCTTTCAGATGCGGCGCAGGTTGTTTCCAGATGCATCCTTGCTGCGCCATGCTATCTTCAGAAATCAGCTTGCCATATCTCCATCCCCATACCCTAAGACTTTTACCTGCATCAAAAAGTGGCAGCGATCCGAGTTTCGTGTGTGGTGAGTGCAGGAGGAAGAGGTCGGGCACCAGAGTGTACCATTGCACCGTCTGTGACTACCATCTTCATGCGGTATGTGCAAAGAATATGATCAATGGACTTCAAGAAAATGGCATCAAGAACCTAGAAAAGCCCAGCATGTTGGGGACTGCAGCTCGCCTGGCATCTCAAGTGGTCATCGAGTTCCTTGGGGGGTTGATGGAGGGGCTTGGGGAAGGTGTTGCAGAAGTCTTTGTCCAAAATGTCACCAGATCAGGAAGAGGCAATGGTAGAGGAAGAAATCCTACTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

354

Amino Acids

39.13

Weight (kDa)

9.07

Isoelectric Point (pI)

42.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 122 - 166 1.4e-08 C1 domain
C1_2 PF03107 236 - 284 1.5e-09 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014254)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20990
fragaria_vesca FvH4_5g26520
malus_domestica MD00G1031500.v1.1 MD06G1001400.v1.1
prunus_persica Prupe.5G002200_v2.0.a1
pyrus_communis pycom06g00150 pycom16g26300
rosa_chinensis RchiOBHm_Chr7g0217421
rosa_laevigata RLG00000002478
rosa_multiflora Rmu_sc0000145.1_g000014
rosa_roxburghii Rroxscaffold_3G00242090
rosa_rugosa Rorug07G0169000
rosa_samantha Rh7AG308700 Rh7BG299400 Rh7CG328100 Rh7DG308000
rosa_wichuraiana Rw7G026180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 425
Acc36I ACCTGC 3 cut(s) 425, 635, 742
AccB1I GGYRCC 1 cut(s) 797
AccBSI CCGCTC 1 cut(s) 269
AciI CCGC 3 cut(s) 267, 639, 842
AclWI GGATC 1 cut(s) 749
AcsI RAATTY 1 cut(s) 287
AcuI CTGAAG 1 cut(s) 669
AfaI GTAC 4 cut(s) 10, 437, 455, 809
AfiI CCNNNNNNNGG 3 cut(s) 147, 572, 620
AgsI TTSAA 3 cut(s) 214, 252, 875
AjnI CCWGG 1 cut(s) 930
AleI CACNNNNGTG 1 cut(s) 803
AluBI AGCT 3 cut(s) 503, 696, 926
AluI AGCT 3 cut(s) 503, 696, 926
AlwI GGATC 1 cut(s) 749
ApeKI GCWGC 4 cut(s) 606, 669, 750, 923
ApoI RAATTY 1 cut(s) 287
AspLEI GCGC 4 cut(s) 422, 443, 644, 674
AspS9I GGNCC 1 cut(s) 406
AsuHPI GGTGA 3 cut(s) 406, 785, 1009
AvaII GGWCC 1 cut(s) 406
BaeGI GKGCMC 1 cut(s) 800
BaeI ACNNNNGTAYC 2 cut(s) 445, 478
BanI GGYRCC 1 cut(s) 797
BarI GAAGNNNNNNTAC 1 cut(s) 1039
BbsI GAAGAC 2 cut(s) 77, 224
BbvCI CCTCAGC 1 cut(s) 499
BbvI GCAGC 4 cut(s) 618, 656, 762, 935
BccI CCATC 5 cut(s) 136, 623, 717, 840, 964
BceAI ACGGC 1 cut(s) 454
BciT130I CCWGG 1 cut(s) 932
BclI TGATCA 1 cut(s) 861
BfaI CTAG 1 cut(s) 896
BfmI CTRYAG 1 cut(s) 921
BfuAI ACCTGC 3 cut(s) 425, 635, 742
BisI GCNGC 5 cut(s) 607, 640, 670, 751, 924
BlsI GCNGC 5 cut(s) 608, 641, 671, 752, 925
Bme1390I CCNGG 1 cut(s) 932
Bme18I GGWCC 1 cut(s) 406
BmgT120I GGNCC 1 cut(s) 406
BmiI GGNNCC 1 cut(s) 799
BmrFI CCNGG 1 cut(s) 932
BmsI GCATC 8 cut(s) 37, 345, 626, 648, 670, 746, 894, 944
BpiI GAAGAC 2 cut(s) 77, 224
BpmI CTGGAG 1 cut(s) 492
Bpu10I CCTNAGC 1 cut(s) 499
BpuEI CTTGAG 1 cut(s) 924
Bsa29I ATCGAT 1 cut(s) 134
BsaJI CCNNGG 2 cut(s) 282, 958
BsaWI WCCGGW 1 cut(s) 403
Bsc4I CCNNNNNNNGG 3 cut(s) 147, 572, 620
Bse118I RCCGGY 1 cut(s) 422
Bse1I ACTGG 2 cut(s) 509, 566
Bse3DI GCAATG 4 cut(s) 11, 532, 811, 1042
BseBI CCWGG 1 cut(s) 932
BseCI ATCGAT 1 cut(s) 134
BseDI CCNNGG 2 cut(s) 282, 958
BseGI GGATG 4 cut(s) 379, 523, 661, 709
BseLI CCNNNNNNNGG 3 cut(s) 147, 572, 620
BseMI GCAATG 4 cut(s) 11, 532, 811, 1042
BseMII CTCAG 1 cut(s) 513
BseNI ACTGG 2 cut(s) 509, 566
BseRI GAGGAG 3 cut(s) 321, 365, 495
BseSI GKGCMC 1 cut(s) 800
BseXI GCAGC 4 cut(s) 618, 656, 762, 935
BseYI CCCAGC 1 cut(s) 905
BsgI GTGCAG 1 cut(s) 799
BshNI GGYRCC 1 cut(s) 797
BshVI ATCGAT 1 cut(s) 134
BsiSI CCGG 2 cut(s) 404, 423
BslFI GGGAC 2 cut(s) 278, 931
BslI CCNNNNNNNGG 3 cut(s) 147, 572, 620
BsmFI GGGAC 2 cut(s) 278, 931
Bsp1286I GDGCHC 1 cut(s) 800
Bsp143I GATC 3 cut(s) 754, 861, 1022
Bsp19I CCATGG 1 cut(s) 282
BspACI CCGC 3 cut(s) 267, 639, 842
BspCNI CTCAG 1 cut(s) 512
BspDI ATCGAT 1 cut(s) 134
BspHI TCATGA 1 cut(s) 484
BspLI GGNNCC 1 cut(s) 799
BspMAI CTGCAG 1 cut(s) 925
BspMI ACCTGC 3 cut(s) 425, 635, 742
BspPI GGATC 1 cut(s) 749
BspT107I GGYRCC 1 cut(s) 797
BsrBI CCGCTC 1 cut(s) 269
BsrDI GCAATG 4 cut(s) 11, 532, 811, 1042
BsrFI RCCGGY 1 cut(s) 422
BsrI ACTGG 2 cut(s) 509, 566
BssAI RCCGGY 1 cut(s) 422
BssECI CCNNGG 2 cut(s) 282, 958
BssMI GATC 3 cut(s) 754, 861, 1022
BssT1I CCWWGG 2 cut(s) 282, 958
Bst2UI CCWGG 1 cut(s) 932
Bst4CI ACNGT 1 cut(s) 820
Bst6I CTCTTC 3 cut(s) 416, 782, 1024
BstC8I GCNNGC 5 cut(s) 424, 445, 611, 698, 928
BstDEI CTNAG 2 cut(s) 499, 722
BstDSI CCRYGG 1 cut(s) 282
BstF5I GGATG 4 cut(s) 379, 523, 661, 709
BstHHI GCGC 4 cut(s) 422, 443, 644, 674
BstKTI GATC 3 cut(s) 757, 864, 1025
BstMBI GATC 3 cut(s) 754, 861, 1022
BstMWI GCNNNNNNNGC 2 cut(s) 848, 932
BstNI CCWGG 1 cut(s) 932
BstNSI RCATGY 1 cut(s) 913
BstSCI CCNGG 1 cut(s) 930
BstSFI CTRYAG 1 cut(s) 921
BstSLI GKGCMC 1 cut(s) 800
BstV1I GCAGC 4 cut(s) 618, 656, 762, 935
BstV2I GAAGAC 2 cut(s) 77, 224
BstXI CCANNNNNNTGG 1 cut(s) 913
Bsu15I ATCGAT 1 cut(s) 134
BsuTUI ATCGAT 1 cut(s) 134
BtgI CCRYGG 1 cut(s) 282
BtsCI GGATG 4 cut(s) 379, 523, 661, 709
BveI ACCTGC 3 cut(s) 425, 635, 742
Cac8I GCNNGC 5 cut(s) 424, 445, 611, 698, 928
CciI TCATGA 1 cut(s) 484
CfoI GCGC 4 cut(s) 422, 443, 644, 674
Cfr10I RCCGGY 1 cut(s) 422
Cfr13I GGNCC 1 cut(s) 406
ClaI ATCGAT 1 cut(s) 134
Csp6I GTAC 4 cut(s) 9, 436, 454, 808
CviAII CATG 6 cut(s) 283, 392, 485, 676, 839, 910
CviJI RGCY 9 cut(s) 369, 426, 503, 613, 624, 696, 904, 926, 979
CviKI_1 RGCY 9 cut(s) 369, 426, 503, 613, 624, 696, 904, 926, 979
CviQI GTAC 4 cut(s) 9, 436, 454, 808
DdeI CTNAG 2 cut(s) 499, 722
DpnI GATC 3 cut(s) 756, 863, 1024
DpnII GATC 3 cut(s) 754, 861, 1022
Eam1104I CTCTTC 3 cut(s) 416, 782, 1024
EarI CTCTTC 3 cut(s) 416, 782, 1024
Eco130I CCWWGG 2 cut(s) 282, 958
Eco47I GGWCC 1 cut(s) 406
Eco57I CTGAAG 1 cut(s) 669
EcoRII CCWGG 1 cut(s) 930
EcoT14I CCWWGG 2 cut(s) 282, 958
EcoT22I ATGCAT 1 cut(s) 663
ErhI CCWWGG 2 cut(s) 282, 958
FaeI CATG 6 cut(s) 286, 395, 488, 679, 842, 913
FalI AAGNNNNNCTT 2 cut(s) 292, 324
FaqI GGGAC 2 cut(s) 278, 931
FatI CATG 6 cut(s) 282, 391, 484, 675, 838, 909
FbaI TGATCA 1 cut(s) 861
Fnu4HI GCNGC 5 cut(s) 607, 640, 670, 751, 924
FokI GGATG 4 cut(s) 366, 510, 648, 696
Fsp4HI GCNGC 5 cut(s) 607, 640, 670, 751, 924
FspBI CTAG 1 cut(s) 896
GlaI GCGC 4 cut(s) 421, 442, 643, 673
GluI GCNGC 5 cut(s) 607, 640, 670, 751, 924
GsaI CCCAGC 1 cut(s) 909
GsuI CTGGAG 1 cut(s) 492
HapII CCGG 2 cut(s) 404, 423
HhaI GCGC 4 cut(s) 422, 443, 644, 674
Hin1II CATG 6 cut(s) 286, 395, 488, 679, 842, 913
Hin6I GCGC 4 cut(s) 420, 441, 642, 672
HinP1I GCGC 4 cut(s) 420, 441, 642, 672
HincII GTYRAC 1 cut(s) 464
HindII GTYRAC 1 cut(s) 464
HinfI GANTC 2 cut(s) 248, 520
HpaII CCGG 2 cut(s) 404, 423
HphI GGTGA 3 cut(s) 406, 785, 1009
Hpy166II GTNNAC 4 cut(s) 397, 456, 464, 808
Hpy188I TCNGA 4 cut(s) 247, 635, 688, 759
Hpy188III TCNNGA 5 cut(s) 485, 655, 875, 889, 1026
Hpy8I GTNNAC 4 cut(s) 397, 456, 464, 808
HpyAV CCTTC 2 cut(s) 538, 980
HpyCH4III ACNGT 1 cut(s) 820
HpyF10VI GCNNNNNNNGC 2 cut(s) 848, 932
HpyF3I CTNAG 2 cut(s) 499, 722
Hsp92II CATG 6 cut(s) 286, 395, 488, 679, 842, 913
HspAI GCGC 4 cut(s) 420, 441, 642, 672
KroI GCCGGC 1 cut(s) 422
KroNI GCCGGC 1 cut(s) 424
Ksp22I TGATCA 1 cut(s) 861
Kzo9I GATC 3 cut(s) 754, 861, 1022
LmnI GCTCC 2 cut(s) 363, 508
Lsp1109I GCAGC 4 cut(s) 618, 656, 762, 935
LweI GCATC 8 cut(s) 37, 345, 626, 648, 670, 746, 894, 944
MaeI CTAG 1 cut(s) 896
MaeIII GTNAC 2 cut(s) 824, 1015
MalI GATC 3 cut(s) 756, 863, 1024
MbiI CCGCTC 1 cut(s) 269
MboI GATC 3 cut(s) 754, 861, 1022
MhlI GDGCHC 1 cut(s) 800
MluCI AATT 3 cut(s) 97, 111, 287
Mph1103I ATGCAT 1 cut(s) 663
MroNI GCCGGC 1 cut(s) 422
MseI TTAA 1 cut(s) 114
MslI CAYNNNNRTG 4 cut(s) 179, 182, 803, 837
MspI CCGG 2 cut(s) 404, 423
MspR9I CCNGG 1 cut(s) 932
MvaI CCWGG 1 cut(s) 932
MwoI GCNNNNNNNGC 2 cut(s) 848, 932
NaeI GCCGGC 1 cut(s) 424
NcoI CCATGG 1 cut(s) 282
NdeII GATC 3 cut(s) 754, 861, 1022
NgoMIV GCCGGC 1 cut(s) 422
NlaIII CATG 6 cut(s) 286, 395, 488, 679, 842, 913
NlaIV GGNNCC 1 cut(s) 799
NmuCI GTSAC 2 cut(s) 824, 1015
NsiI ATGCAT 1 cut(s) 663
NspI RCATGY 1 cut(s) 913
OliI CACNNNNGTG 1 cut(s) 803
PagI TCATGA 1 cut(s) 484
PaqCI CACCTGC 1 cut(s) 425
PdiI GCCGGC 1 cut(s) 424
PfeI GAWTC 2 cut(s) 248, 520
PkrI GCNGC 5 cut(s) 608, 641, 671, 752, 925
Psp6I CCWGG 1 cut(s) 930
PspFI CCCAGC 1 cut(s) 905
PspGI CCWGG 1 cut(s) 930
PspN4I GGNNCC 1 cut(s) 799
PspPI GGNCC 1 cut(s) 406
PstI CTGCAG 1 cut(s) 925
RsaI GTAC 4 cut(s) 10, 437, 455, 809
RsaNI GTAC 4 cut(s) 9, 436, 454, 808
RseI CAYNNNNRTG 4 cut(s) 179, 182, 803, 837
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 5 cut(s) 607, 640, 670, 751, 924
Sau3AI GATC 3 cut(s) 754, 861, 1022
Sau96I GGNCC 1 cut(s) 406
ScrFI CCNGG 1 cut(s) 932
SduI GDGCHC 1 cut(s) 800
SfaNI GCATC 8 cut(s) 37, 345, 626, 648, 670, 746, 894, 944
SfcI CTRYAG 1 cut(s) 921
SinI GGWCC 1 cut(s) 406
SmiMI CAYNNNNRTG 4 cut(s) 179, 182, 803, 837
SmlI CTYRAG 1 cut(s) 939
SmoI CTYRAG 1 cut(s) 939
Sse9I AATT 3 cut(s) 97, 111, 287
SsiI CCGC 3 cut(s) 267, 639, 842
SspI AATATT 1 cut(s) 79
SspMI CTAG 1 cut(s) 896
StyD4I CCNGG 1 cut(s) 930
StyI CCWWGG 2 cut(s) 282, 958
TaaI ACNGT 1 cut(s) 820
TaqI TCGA 3 cut(s) 134, 590, 951
TasI AATT 3 cut(s) 97, 111, 287
TatI WGTACW 1 cut(s) 8
TauI GCSGC 1 cut(s) 642
TfiI GAWTC 2 cut(s) 248, 520
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TseFI GTSAC 2 cut(s) 824, 1015
TseI GCWGC 4 cut(s) 606, 669, 750, 923
Tsp45I GTSAC 2 cut(s) 824, 1015
TspDTI ATGAA 2 cut(s) 473, 827
VpaK11BI GGWCC 1 cut(s) 406
XapI RAATTY 1 cut(s) 287
XceI RCATGY 1 cut(s) 913
XspI CTAG 1 cut(s) 896
Zsp2I ATGCAT 1 cut(s) 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.