RLG00000002478

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0014254
Physical Location & Seq
Forward (+)
34964483 .. 34966179
1697 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002478

Sequence Viewer

Length: 885 bp
ATGATGATGAGCAACAACAACAAACCCACCTTGAAGAAGACAAGAACCTTTTCCCCCAAGAAATCAGATTCAATGCAAACCCCCACCGCTCATCATCAACCCATGGAATTTGTCCCCAAAAGGAGTGCTTCGCTAAAGTTTCCGACCTCTCCTCAACTTGTTTTGGGGGAGGAGACGCTCCATTTCAGTCACCCACAACATCGTCTTTCCCATGTGAACTTACCGGACCTCTTCACCTGCGCCGGCTGTAAAGAGTATGGCGCAGGCAAGAGGTTCACTTGTCAACGATGTGATTATCAACTTCACGATTTTTGTGCCTTGGCTCCTCCAGTTCTAAATAGTCATCCCTTCCATTGCCAACACCAACTTGCTTTCTATTCTAAACCAGTAAAAGGAGGGATTGCACAATCGAAGTGTGATGTTTGCAGCAAGCCCATCAAAGGCTATGCTTTCAGATGCGGCGCAGGTTGTTTCCAGATGCATCCTTGCTGCGCCATGCTATCTTCGGAAATCAGCTTGCCATATCTCCATCCCCATACCCTAAGACTTTTACCTGCATCAAAAAGTGGCAGCGATCCGAGTTTCGTGTGTGGTGAGTGCAGGAGGAAGAGGTCGGGCACCAGAGTGTACCACTGCACCGTCTGTGATTACCATCTTCATGCGGTATGTGCAAAGAATATGATCAATGGACTTCACGAAAATGGCATCAAGAACCGAGAAAAGCCCAGCATGTTGGGGACTGCAGCTCGCCTGGCATCTCAAGTGGTCATCGAGTTCCTTGGGGGGTTGATGGAGGGGCTTGGGGAAGGTGTTGCAGAAGTCTTTGTCCAAAATGTCACCAGATCAGGAAGAGGCAATGGTAGAGGAAGAAGTCCTCCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

295

Amino Acids

32.42

Weight (kDa)

9.32

Isoelectric Point (pI)

45.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 62 - 106 2.9e-07 C1 domain
C1_2 PF03107 176 - 224 1.1e-09 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014254)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20990
fragaria_vesca FvH4_5g26520
malus_domestica MD00G1031500.v1.1 MD06G1001400.v1.1
prunus_persica Prupe.5G002200_v2.0.a1
pyrus_communis pycom06g00150 pycom16g26300
rosa_chinensis RchiOBHm_Chr7g0217421
rosa_laevigata RLG00000002478
rosa_multiflora Rmu_sc0000145.1_g000014
rosa_roxburghii Rroxscaffold_3G00242090
rosa_rugosa Rorug07G0169000
rosa_samantha Rh7AG308700 Rh7BG299400 Rh7CG328100 Rh7DG308000
rosa_wichuraiana Rw7G026180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 245
Acc36I ACCTGC 3 cut(s) 245, 455, 562
AccB1I GGYRCC 1 cut(s) 617
AccBSI CCGCTC 1 cut(s) 89
AciI CCGC 3 cut(s) 87, 459, 662
AclWI GGATC 1 cut(s) 569
AcsI RAATTY 1 cut(s) 107
AfaI GTAC 1 cut(s) 629
AfiI CCNNNNNNNGG 2 cut(s) 392, 440
AgsI TTSAA 2 cut(s) 34, 72
AjnI CCWGG 1 cut(s) 750
AleI CACNNNNGTG 1 cut(s) 623
AluBI AGCT 2 cut(s) 516, 746
AluI AGCT 2 cut(s) 516, 746
Alw26I GTCTC 1 cut(s) 167
AlwI GGATC 1 cut(s) 569
ApeKI GCWGC 4 cut(s) 426, 489, 570, 743
ApoI RAATTY 1 cut(s) 107
Asp700I GAANNNNTTC 1 cut(s) 49
AspLEI GCGC 4 cut(s) 242, 263, 464, 494
AspS9I GGNCC 1 cut(s) 226
AsuHPI GGTGA 4 cut(s) 182, 226, 605, 829
AvaII GGWCC 1 cut(s) 226
BaeGI GKGCMC 1 cut(s) 620
BanI GGYRCC 1 cut(s) 617
BbsI GAAGAC 1 cut(s) 44
BbvI GCAGC 4 cut(s) 438, 476, 582, 755
BccI CCATC 4 cut(s) 443, 537, 660, 784
BcgI CGANNNNNNTGC 2 cut(s) 296, 330
BciT130I CCWGG 1 cut(s) 752
BclI TGATCA 1 cut(s) 681
BcoDI GTCTC 1 cut(s) 167
BfmI CTRYAG 1 cut(s) 741
BfuAI ACCTGC 3 cut(s) 245, 455, 562
BisI GCNGC 5 cut(s) 427, 460, 490, 571, 744
BlsI GCNGC 5 cut(s) 428, 461, 491, 572, 745
Bme1390I CCNGG 1 cut(s) 752
Bme18I GGWCC 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 226
BmiI GGNNCC 2 cut(s) 324, 619
BmrFI CCNGG 1 cut(s) 752
BmsI GCATC 6 cut(s) 446, 468, 490, 566, 714, 764
BpiI GAAGAC 1 cut(s) 44
BpmI CTGGAG 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 744
BsaBI GATNNNNATC 1 cut(s) 651
BsaJI CCNNGG 3 cut(s) 102, 318, 778
BsaWI WCCGGW 1 cut(s) 223
Bsc4I CCNNNNNNNGG 2 cut(s) 392, 440
Bse118I RCCGGY 1 cut(s) 242
Bse1I ACTGG 2 cut(s) 329, 386
Bse3DI GCAATG 2 cut(s) 352, 862
Bse8I GATNNNNATC 1 cut(s) 651
BseBI CCWGG 1 cut(s) 752
BseDI CCNNGG 3 cut(s) 102, 318, 778
BseGI GGATG 3 cut(s) 343, 481, 529
BseJI GATNNNNATC 1 cut(s) 651
BseLI CCNNNNNNNGG 2 cut(s) 392, 440
BseMI GCAATG 2 cut(s) 352, 862
BseNI ACTGG 2 cut(s) 329, 386
BseRI GAGGAG 4 cut(s) 141, 185, 315, 867
BseSI GKGCMC 1 cut(s) 620
BseXI GCAGC 4 cut(s) 438, 476, 582, 755
BseYI CCCAGC 1 cut(s) 725
BsgI GTGCAG 2 cut(s) 619, 619
BshNI GGYRCC 1 cut(s) 617
BsiSI CCGG 2 cut(s) 224, 243
BslFI GGGAC 2 cut(s) 98, 751
BslI CCNNNNNNNGG 2 cut(s) 392, 440
BsmAI GTCTC 1 cut(s) 167
BsmBI CGTCTC 1 cut(s) 167
BsmFI GGGAC 2 cut(s) 98, 751
Bsp1286I GDGCHC 1 cut(s) 620
Bsp143I GATC 3 cut(s) 574, 681, 842
Bsp19I CCATGG 1 cut(s) 102
BspACI CCGC 3 cut(s) 87, 459, 662
BspLI GGNNCC 2 cut(s) 324, 619
BspMAI CTGCAG 1 cut(s) 745
BspMI ACCTGC 3 cut(s) 245, 455, 562
BspPI GGATC 1 cut(s) 569
BspT107I GGYRCC 1 cut(s) 617
BsrBI CCGCTC 1 cut(s) 89
BsrDI GCAATG 2 cut(s) 352, 862
BsrFI RCCGGY 1 cut(s) 242
BsrI ACTGG 2 cut(s) 329, 386
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 3 cut(s) 102, 318, 778
BssMI GATC 3 cut(s) 574, 681, 842
BssT1I CCWWGG 3 cut(s) 102, 318, 778
Bst2UI CCWGG 1 cut(s) 752
Bst4CI ACNGT 1 cut(s) 640
Bst6I CTCTTC 3 cut(s) 236, 602, 844
BstC8I GCNNGC 5 cut(s) 244, 265, 431, 518, 748
BstDEI CTNAG 1 cut(s) 542
BstDSI CCRYGG 1 cut(s) 102
BstF5I GGATG 3 cut(s) 343, 481, 529
BstHHI GCGC 4 cut(s) 242, 263, 464, 494
BstKTI GATC 3 cut(s) 577, 684, 845
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 3 cut(s) 574, 681, 842
BstMWI GCNNNNNNNGC 2 cut(s) 668, 752
BstNI CCWGG 1 cut(s) 752
BstNSI RCATGY 1 cut(s) 733
BstSCI CCNGG 1 cut(s) 750
BstSFI CTRYAG 1 cut(s) 741
BstSLI GKGCMC 1 cut(s) 620
BstV1I GCAGC 4 cut(s) 438, 476, 582, 755
BstV2I GAAGAC 1 cut(s) 44
BstXI CCANNNNNNTGG 1 cut(s) 733
BtgI CCRYGG 1 cut(s) 102
BtsCI GGATG 3 cut(s) 343, 481, 529
BtsI GCAGTG 1 cut(s) 631
BtsIMutI CAGTG 1 cut(s) 631
BveI ACCTGC 3 cut(s) 245, 455, 562
Cac8I GCNNGC 5 cut(s) 244, 265, 431, 518, 748
CfoI GCGC 4 cut(s) 242, 263, 464, 494
Cfr10I RCCGGY 1 cut(s) 242
Cfr13I GGNCC 1 cut(s) 226
CseI GACGC 1 cut(s) 184
Csp6I GTAC 1 cut(s) 628
CviAII CATG 5 cut(s) 103, 212, 496, 659, 730
CviJI RGCY 8 cut(s) 246, 323, 433, 444, 516, 724, 746, 799
CviKI_1 RGCY 8 cut(s) 246, 323, 433, 444, 516, 724, 746, 799
CviQI GTAC 1 cut(s) 628
DdeI CTNAG 1 cut(s) 542
DpnI GATC 3 cut(s) 576, 683, 844
DpnII GATC 3 cut(s) 574, 681, 842
Eam1104I CTCTTC 3 cut(s) 236, 602, 844
EarI CTCTTC 3 cut(s) 236, 602, 844
Eco130I CCWWGG 3 cut(s) 102, 318, 778
Eco47I GGWCC 1 cut(s) 226
EcoRII CCWGG 1 cut(s) 750
EcoT14I CCWWGG 3 cut(s) 102, 318, 778
EcoT22I ATGCAT 1 cut(s) 483
ErhI CCWWGG 3 cut(s) 102, 318, 778
Esp3I CGTCTC 1 cut(s) 167
FaeI CATG 5 cut(s) 106, 215, 499, 662, 733
FalI AAGNNNNNCTT 2 cut(s) 112, 144
FaqI GGGAC 2 cut(s) 98, 751
FatI CATG 5 cut(s) 102, 211, 495, 658, 729
FbaI TGATCA 1 cut(s) 681
Fnu4HI GCNGC 5 cut(s) 427, 460, 490, 571, 744
FokI GGATG 3 cut(s) 330, 468, 516
Fsp4HI GCNGC 5 cut(s) 427, 460, 490, 571, 744
GlaI GCGC 4 cut(s) 241, 262, 463, 493
GluI GCNGC 5 cut(s) 427, 460, 490, 571, 744
GsaI CCCAGC 1 cut(s) 729
GsuI CTGGAG 1 cut(s) 312
HapII CCGG 2 cut(s) 224, 243
HgaI GACGC 1 cut(s) 184
HhaI GCGC 4 cut(s) 242, 263, 464, 494
Hin1II CATG 5 cut(s) 106, 215, 499, 662, 733
Hin6I GCGC 4 cut(s) 240, 261, 462, 492
HinP1I GCGC 4 cut(s) 240, 261, 462, 492
HincII GTYRAC 1 cut(s) 284
HindII GTYRAC 1 cut(s) 284
HinfI GANTC 1 cut(s) 68
HpaII CCGG 2 cut(s) 224, 243
HphI GGTGA 4 cut(s) 182, 226, 605, 829
Hpy166II GTNNAC 4 cut(s) 217, 276, 284, 628
Hpy188I TCNGA 5 cut(s) 67, 144, 455, 508, 579
Hpy188III TCNNGA 5 cut(s) 305, 475, 695, 709, 846
Hpy8I GTNNAC 4 cut(s) 217, 276, 284, 628
HpyAV CCTTC 2 cut(s) 358, 800
HpyCH4III ACNGT 1 cut(s) 640
HpyF10VI GCNNNNNNNGC 2 cut(s) 668, 752
HpyF3I CTNAG 1 cut(s) 542
Hsp92II CATG 5 cut(s) 106, 215, 499, 662, 733
HspAI GCGC 4 cut(s) 240, 261, 462, 492
KroI GCCGGC 1 cut(s) 242
KroNI GCCGGC 1 cut(s) 244
Ksp22I TGATCA 1 cut(s) 681
Kzo9I GATC 3 cut(s) 574, 681, 842
LmnI GCTCC 2 cut(s) 183, 328
Lsp1109I GCAGC 4 cut(s) 438, 476, 582, 755
LweI GCATC 6 cut(s) 446, 468, 490, 566, 714, 764
MaeIII GTNAC 2 cut(s) 188, 835
MalI GATC 3 cut(s) 576, 683, 844
MbiI CCGCTC 1 cut(s) 89
MboI GATC 3 cut(s) 574, 681, 842
MboII GAAGA 8 cut(s) 46, 49, 223, 495, 619, 647, 861, 879
MhlI GDGCHC 1 cut(s) 620
MluCI AATT 1 cut(s) 107
MmeI TCCRAC 1 cut(s) 167
Mph1103I ATGCAT 1 cut(s) 483
MroNI GCCGGC 1 cut(s) 242
MroXI GAANNNNTTC 1 cut(s) 49
MslI CAYNNNNRTG 3 cut(s) 623, 657, 699
MspI CCGG 2 cut(s) 224, 243
MspR9I CCNGG 1 cut(s) 752
MvaI CCWGG 1 cut(s) 752
MwoI GCNNNNNNNGC 2 cut(s) 668, 752
NaeI GCCGGC 1 cut(s) 244
NcoI CCATGG 1 cut(s) 102
NdeII GATC 3 cut(s) 574, 681, 842
NgoMIV GCCGGC 1 cut(s) 242
NlaIII CATG 5 cut(s) 106, 215, 499, 662, 733
NlaIV GGNNCC 2 cut(s) 324, 619
NmuCI GTSAC 2 cut(s) 188, 835
NsiI ATGCAT 1 cut(s) 483
NspI RCATGY 1 cut(s) 733
OliI CACNNNNGTG 1 cut(s) 623
PaqCI CACCTGC 1 cut(s) 245
PdiI GCCGGC 1 cut(s) 244
PdmI GAANNNNTTC 1 cut(s) 49
PfeI GAWTC 1 cut(s) 68
PkrI GCNGC 5 cut(s) 428, 461, 491, 572, 745
Psp6I CCWGG 1 cut(s) 750
PspFI CCCAGC 1 cut(s) 725
PspGI CCWGG 1 cut(s) 750
PspN4I GGNNCC 2 cut(s) 324, 619
PspPI GGNCC 1 cut(s) 226
PstI CTGCAG 1 cut(s) 745
RsaI GTAC 1 cut(s) 629
RsaNI GTAC 1 cut(s) 628
RseI CAYNNNNRTG 3 cut(s) 623, 657, 699
SatI GCNGC 5 cut(s) 427, 460, 490, 571, 744
Sau3AI GATC 3 cut(s) 574, 681, 842
Sau96I GGNCC 1 cut(s) 226
ScrFI CCNGG 1 cut(s) 752
SduI GDGCHC 1 cut(s) 620
SfaNI GCATC 6 cut(s) 446, 468, 490, 566, 714, 764
SfcI CTRYAG 1 cut(s) 741
SinI GGWCC 1 cut(s) 226
SmiMI CAYNNNNRTG 3 cut(s) 623, 657, 699
SmlI CTYRAG 1 cut(s) 759
SmoI CTYRAG 1 cut(s) 759
Sse9I AATT 1 cut(s) 107
SsiI CCGC 3 cut(s) 87, 459, 662
StyD4I CCNGG 1 cut(s) 750
StyI CCWWGG 3 cut(s) 102, 318, 778
TaaI ACNGT 1 cut(s) 640
TaqI TCGA 2 cut(s) 410, 771
TasI AATT 1 cut(s) 107
TauI GCSGC 1 cut(s) 462
TfiI GAWTC 1 cut(s) 68
TscAI CASTG 1 cut(s) 638
TseFI GTSAC 2 cut(s) 188, 835
TseI GCWGC 4 cut(s) 426, 489, 570, 743
Tsp45I GTSAC 2 cut(s) 188, 835
TspDTI ATGAA 1 cut(s) 647
TspRI CASTG 1 cut(s) 638
VpaK11BI GGWCC 1 cut(s) 226
XapI RAATTY 1 cut(s) 107
XceI RCATGY 1 cut(s) 733
XmnI GAANNNNTTC 1 cut(s) 49
Zsp2I ATGCAT 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.