Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0014254

Physical Location & Seq

Genomic Coordinates Reverse (-)

17991709 .. 17993061

Gene Structure 1353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g26520.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGATGAGCAACAACAACAATCCCACCTTGAGGAAGACAAGAACCTTTCTCCTCAAGAAATCCGATTCAATGCAACTCCCCACCGTTCAACCCATGGAAGTTGTCCCTAAAAGGTCTGCTTCACTAAGGTTCCCTACCTCTCCTCAACTTGTTTTGGGGGAGGAGATGCTCCATTTCAGTCACCCACAACATCCTCTTTCCCATGTGAACTTACCAGATCTCTTCACCTGCGCCGGCTGTAAAGAGTACGGCGCAGGCAAGAGGTTCACTTGTCAACAATGTGACTATCAACTTCATGATTTTTGTGCCTTGGCTCCTCCAGCTTTAAAGAGTCATCCCTTCCATTGCCAACACCAACTTGTTTTCTATTCTAAACCAGTAAAAGGAGGGATTGCACAATCGAAGTGTGATGTTTGCAACAAGCCCATCAAAGGCTATGCTTTCAGATGTGGAGCATGTAGTTTCCAGATGCATCCCTGCTGTGCCATGCTATCTTCTGAAATCAGCTTGCTATATGTTCATCCCCATACCCTTAGACTTCTACCTGCATCAACTACACTATCAAGTGGCAGCGATCCGAGTTTCGTTTGTGGTGAGTGCAGGAGGAAGAGGTCAGGCACCAGAGTTTACCATTGCACCGTCTGTGATTACCATCTTCATGCGGTTTGCGCAAAGAATATGATCAATGGACTTCACGAAAATGGCATCAAGAACCGAGAAAAGCCCAGCATGTTGGGGACTGCAGCTCGCCTCGCATCTCAAGTGGTCATCGAGTTCATCGGGGGTTTGATGGAGGGGCTAGGGGAAGGTGTTGCAGAAGTGTTTGTACAAAATGTCACCAGATCAGGAAGAGGCAATGGTAGAGGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C1_2

Protein Analysis

291

Amino Acids

32.01

Weight (kDa)

9.16

Isoelectric Point (pI)

44.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C1_2	PF03107	59 - 103	5.5e-08	C1 domain
C1_2	PF03107	114 - 162	8.8e-06	C1 domain
C1_2	PF03107	173 - 224	4.1e-09	C1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014254)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20990
fragaria_vesca	FvH4_5g26520
malus_domestica	MD00G1031500.v1.1 MD06G1001400.v1.1
prunus_persica	Prupe.5G002200_v2.0.a1
pyrus_communis	pycom06g00150 pycom16g26300
rosa_chinensis	RchiOBHm_Chr7g0217421
rosa_laevigata	RLG00000002478
rosa_multiflora	Rmu_sc0000145.1_g000014
rosa_roxburghii	Rroxscaffold_3G00242090
rosa_rugosa	Rorug07G0169000
rosa_samantha	Rh7AG308700 Rh7BG299400 Rh7CG328100 Rh7DG308000
rosa_wichuraiana	Rw7G026180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	236
Acc16I	TGCGCA	1 cut(s)	670
Acc36I	ACCTGC	2 cut(s)	236, 553
AccB1I	GGYRCC	1 cut(s)	617
AciI	CCGC	1 cut(s)	662
AclWI	GGATC	1 cut(s)	569
AfaI	GTAC	2 cut(s)	248, 828
AfiI	CCNNNNNNNGG	3 cut(s)	30, 383, 431
AgsI	TTSAA	2 cut(s)	69, 89
AluBI	AGCT	3 cut(s)	323, 507, 746
AluI	AGCT	3 cut(s)	323, 507, 746
AlwI	GGATC	1 cut(s)	569
ApeKI	GCWGC	2 cut(s)	570, 743
AspLEI	GCGC	3 cut(s)	233, 254, 671
AsuHPI	GGTGA	4 cut(s)	173, 217, 605, 829
BanI	GGYRCC	1 cut(s)	617
BarI	GAAGNNNNNNTAC	2 cut(s)	810, 842
BbsI	GAAGAC	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	582, 755
BccI	CCATC	3 cut(s)	434, 660, 784
BceAI	ACGGC	1 cut(s)	265
BclI	TGATCA	1 cut(s)	681
BfaI	CTAG	1 cut(s)	800
BfmI	CTRYAG	1 cut(s)	741
BfuAI	ACCTGC	2 cut(s)	236, 553
BglII	AGATCT	1 cut(s)	217
BisI	GCNGC	2 cut(s)	571, 744
BlsI	GCNGC	2 cut(s)	572, 745
BmiI	GGNNCC	3 cut(s)	131, 315, 619
BmsI	GCATC	6 cut(s)	156, 459, 481, 557, 714, 764
BpiI	GAAGAC	1 cut(s)	41
BpmI	CTGGAG	1 cut(s)	303
BpuEI	CTTGAG	3 cut(s)	38, 49, 744
BsaBI	GATNNNNATC	1 cut(s)	651
BsaJI	CCNNGG	2 cut(s)	93, 309
Bsc4I	CCNNNNNNNGG	3 cut(s)	30, 383, 431
Bse118I	RCCGGY	1 cut(s)	233
Bse1I	ACTGG	1 cut(s)	377
Bse3DI	GCAATG	3 cut(s)	343, 631, 862
Bse8I	GATNNNNATC	1 cut(s)	651
BseDI	CCNNGG	2 cut(s)	93, 309
BseGI	GGATG	4 cut(s)	190, 334, 472, 520
BseJI	GATNNNNATC	1 cut(s)	651
BseLI	CCNNNNNNNGG	3 cut(s)	30, 383, 431
BseMI	GCAATG	3 cut(s)	343, 631, 862
BseNI	ACTGG	1 cut(s)	377
BseRI	GAGGAG	4 cut(s)	41, 132, 176, 306
BseXI	GCAGC	2 cut(s)	582, 755
BseYI	CCCAGC	1 cut(s)	725
BsgI	GTGCAG	1 cut(s)	619
BshNI	GGYRCC	1 cut(s)	617
BsiSI	CCGG	1 cut(s)	234
BslFI	GGGAC	2 cut(s)	89, 751
BslI	CCNNNNNNNGG	3 cut(s)	30, 383, 431
BsmFI	GGGAC	2 cut(s)	89, 751
Bsp1407I	TGTACA	1 cut(s)	826
Bsp143I	GATC	4 cut(s)	217, 574, 681, 842
Bsp19I	CCATGG	1 cut(s)	93
BspACI	CCGC	1 cut(s)	662
BspHI	TCATGA	1 cut(s)	295
BspLI	GGNNCC	3 cut(s)	131, 315, 619
BspMAI	CTGCAG	1 cut(s)	745
BspMI	ACCTGC	2 cut(s)	236, 553
BspPI	GGATC	1 cut(s)	569
BspT107I	GGYRCC	1 cut(s)	617
BsrDI	GCAATG	3 cut(s)	343, 631, 862
BsrFI	RCCGGY	1 cut(s)	233
BsrGI	TGTACA	1 cut(s)	826
BsrI	ACTGG	1 cut(s)	377
BssAI	RCCGGY	1 cut(s)	233
BssECI	CCNNGG	2 cut(s)	93, 309
BssMI	GATC	4 cut(s)	217, 574, 681, 842
BssT1I	CCWWGG	2 cut(s)	93, 309
Bst4CI	ACNGT	2 cut(s)	85, 640
Bst6I	CTCTTC	3 cut(s)	227, 602, 844
BstAUI	TGTACA	1 cut(s)	826
BstC8I	GCNNGC	4 cut(s)	235, 256, 509, 748
BstDEI	CTNAG	2 cut(s)	125, 533
BstDSI	CCRYGG	1 cut(s)	93
BstF5I	GGATG	4 cut(s)	190, 334, 472, 520
BstHHI	GCGC	3 cut(s)	233, 254, 671
BstKTI	GATC	4 cut(s)	220, 577, 684, 845
BstMBI	GATC	4 cut(s)	217, 574, 681, 842
BstMWI	GCNNNNNNNGC	3 cut(s)	320, 668, 752
BstNSI	RCATGY	2 cut(s)	459, 733
BstSFI	CTRYAG	1 cut(s)	741
BstV1I	GCAGC	2 cut(s)	582, 755
BstV2I	GAAGAC	1 cut(s)	41
BstX2I	RGATCY	1 cut(s)	217
BstXI	CCANNNNNNTGG	1 cut(s)	733
BstYI	RGATCY	1 cut(s)	217
BtgI	CCRYGG	1 cut(s)	93
BtsCI	GGATG	4 cut(s)	190, 334, 472, 520
BveI	ACCTGC	2 cut(s)	236, 553
Cac8I	GCNNGC	4 cut(s)	235, 256, 509, 748
CciI	TCATGA	1 cut(s)	295
CfoI	GCGC	3 cut(s)	233, 254, 671
Cfr10I	RCCGGY	1 cut(s)	233
Csp6I	GTAC	2 cut(s)	247, 827
CviAII	CATG	7 cut(s)	94, 203, 296, 456, 487, 659, 730
CviJI	RGCY	9 cut(s)	237, 314, 323, 424, 435, 507, 724, 746, 799
CviKI_1	RGCY	9 cut(s)	237, 314, 323, 424, 435, 507, 724, 746, 799
CviQI	GTAC	2 cut(s)	247, 827
DdeI	CTNAG	2 cut(s)	125, 533
DpnI	GATC	4 cut(s)	219, 576, 683, 844
DpnII	GATC	4 cut(s)	217, 574, 681, 842
DraI	TTTAAA	1 cut(s)	327
Eam1104I	CTCTTC	3 cut(s)	227, 602, 844
EarI	CTCTTC	3 cut(s)	227, 602, 844
Eco130I	CCWWGG	2 cut(s)	93, 309
EcoT14I	CCWWGG	2 cut(s)	93, 309
EcoT22I	ATGCAT	1 cut(s)	474
ErhI	CCWWGG	2 cut(s)	93, 309
FaeI	CATG	7 cut(s)	97, 206, 299, 459, 490, 662, 733
FalI	AAGNNNNNCTT	2 cut(s)	103, 135
FaqI	GGGAC	2 cut(s)	89, 751
FatI	CATG	7 cut(s)	93, 202, 295, 455, 486, 658, 729
FbaI	TGATCA	1 cut(s)	681
Fnu4HI	GCNGC	2 cut(s)	571, 744
FokI	GGATG	4 cut(s)	177, 321, 459, 507
Fsp4HI	GCNGC	2 cut(s)	571, 744
FspBI	CTAG	1 cut(s)	800
FspI	TGCGCA	1 cut(s)	670
GlaI	GCGC	3 cut(s)	232, 253, 670
GluI	GCNGC	2 cut(s)	571, 744
GsaI	CCCAGC	1 cut(s)	729
GsuI	CTGGAG	1 cut(s)	303
HapII	CCGG	1 cut(s)	234
HhaI	GCGC	3 cut(s)	233, 254, 671
Hin1II	CATG	7 cut(s)	97, 206, 299, 459, 490, 662, 733
Hin6I	GCGC	3 cut(s)	231, 252, 669
HinP1I	GCGC	3 cut(s)	231, 252, 669
HincII	GTYRAC	1 cut(s)	275
HindII	GTYRAC	1 cut(s)	275
HinfI	GANTC	2 cut(s)	65, 331
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	4 cut(s)	173, 217, 605, 829
Hpy166II	GTNNAC	4 cut(s)	208, 267, 275, 628
Hpy188I	TCNGA	4 cut(s)	64, 446, 499, 579
Hpy188III	TCNNGA	6 cut(s)	55, 296, 466, 695, 709, 846
Hpy8I	GTNNAC	4 cut(s)	208, 267, 275, 628
HpyAV	CCTTC	2 cut(s)	349, 800
HpyCH4III	ACNGT	2 cut(s)	85, 640
HpyCH4V	TGCA	9 cut(s)	73, 395, 417, 472, 548, 600, 636, 743, 815
HpyF10VI	GCNNNNNNNGC	3 cut(s)	320, 668, 752
HpyF3I	CTNAG	2 cut(s)	125, 533
Hsp92II	CATG	7 cut(s)	97, 206, 299, 459, 490, 662, 733
HspAI	GCGC	3 cut(s)	231, 252, 669
KroI	GCCGGC	1 cut(s)	233
KroNI	GCCGGC	1 cut(s)	235
Ksp22I	TGATCA	1 cut(s)	681
Kzo9I	GATC	4 cut(s)	217, 574, 681, 842
LmnI	GCTCC	3 cut(s)	174, 319, 452
Lsp1109I	GCAGC	2 cut(s)	582, 755
LweI	GCATC	6 cut(s)	156, 459, 481, 557, 714, 764
MaeI	CTAG	1 cut(s)	800
MaeIII	GTNAC	3 cut(s)	179, 281, 835
MalI	GATC	4 cut(s)	219, 576, 683, 844
MboI	GATC	4 cut(s)	217, 574, 681, 842
MboII	GAAGA	6 cut(s)	46, 214, 486, 619, 647, 861
MflI	RGATCY	1 cut(s)	217
MlyI	GAGTC	1 cut(s)	340
Mph1103I	ATGCAT	1 cut(s)	474
MroNI	GCCGGC	1 cut(s)	233
MseI	TTAA	1 cut(s)	326
MslI	CAYNNNNRTG	2 cut(s)	657, 699
MspI	CCGG	1 cut(s)	234
MwoI	GCNNNNNNNGC	3 cut(s)	320, 668, 752
NaeI	GCCGGC	1 cut(s)	235
NcoI	CCATGG	1 cut(s)	93
NdeII	GATC	4 cut(s)	217, 574, 681, 842
NgoMIV	GCCGGC	1 cut(s)	233
NlaIII	CATG	7 cut(s)	97, 206, 299, 459, 490, 662, 733
NlaIV	GGNNCC	3 cut(s)	131, 315, 619
NmuCI	GTSAC	3 cut(s)	179, 281, 835
NsbI	TGCGCA	1 cut(s)	670
NsiI	ATGCAT	1 cut(s)	474
NspI	RCATGY	2 cut(s)	459, 733
PagI	TCATGA	1 cut(s)	295
PaqCI	CACCTGC	1 cut(s)	236
PdiI	GCCGGC	1 cut(s)	235
PfeI	GAWTC	1 cut(s)	65
PkrI	GCNGC	2 cut(s)	572, 745
PleI	GAGTC	1 cut(s)	339
PpsI	GAGTC	1 cut(s)	339
PspFI	CCCAGC	1 cut(s)	725
PspN4I	GGNNCC	3 cut(s)	131, 315, 619
PstI	CTGCAG	1 cut(s)	745
PsuI	RGATCY	1 cut(s)	217
RsaI	GTAC	2 cut(s)	248, 828
RsaNI	GTAC	2 cut(s)	247, 827
RseI	CAYNNNNRTG	2 cut(s)	657, 699
SaqAI	TTAA	1 cut(s)	326
SatI	GCNGC	2 cut(s)	571, 744
Sau3AI	GATC	4 cut(s)	217, 574, 681, 842
SchI	GAGTC	1 cut(s)	340
SfaNI	GCATC	6 cut(s)	156, 459, 481, 557, 714, 764
SfcI	CTRYAG	1 cut(s)	741
SmiMI	CAYNNNNRTG	2 cut(s)	657, 699
SmlI	CTYRAG	3 cut(s)	28, 53, 759
SmoI	CTYRAG	3 cut(s)	28, 53, 759
SsiI	CCGC	1 cut(s)	662
SspMI	CTAG	1 cut(s)	800
StyI	CCWWGG	2 cut(s)	93, 309
TaaI	ACNGT	2 cut(s)	85, 640
TaqI	TCGA	2 cut(s)	401, 771
TatI	WGTACW	1 cut(s)	826
TfiI	GAWTC	1 cut(s)	65
Tru1I	TTAA	1 cut(s)	326
Tru9I	TTAA	1 cut(s)	326
TseFI	GTSAC	3 cut(s)	179, 281, 835
TseI	GCWGC	2 cut(s)	570, 743
Tsp45I	GTSAC	3 cut(s)	179, 281, 835
TspDTI	ATGAA	4 cut(s)	284, 509, 647, 766
XceI	RCATGY	2 cut(s)	459, 733
XspI	CTAG	1 cut(s)	800
Zsp2I	ATGCAT	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.