Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004934

Physical Location & Seq

Genomic Coordinates Forward (+)

7404328 .. 7405426

Gene Structure 1099 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G21140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGAATCACACAACGTGAGCAACAGCTTGAACCTAGACATGGAGATGGATCAAGAAAAGGCTTTCGACTACTCCAAAAGAGCTCAATGGCTAAGAGCCGCCGTGCTTGGTGCCAACGACGGTCTTGTCTCGACGGCTTCACTTATGATGGGTGTCGGTGCGGTAAAGCAAGACGTCAAAGTCATGATCTTATCTGGTTTCGCCGGTTTGGTCGCCGGAGCTTGTAGCATGGCTATCGGAGAGTTTGTCTCCGTTTACTCTCAGTACGACATCGAGGTGGCTCAAATGAAGAGAGAGAACGGAGGACAAGTGGAGAAAGAGAAGCTTCCGAGTCCCATGCAAGCGGCTGCCGCGTCTGCGTTAGCGTTTTCTTTGGGTGCGATTGTGCCTTTAATGGCGGCTGCGTTTGTGAAAGACTATCACGTGAGAATAGGAGCGATCGTGGCGGCGGTGACATTGGCGTTAGTGATGTTTGGGTGGTTAGGAGCGGTTTTGGGGAAAGCACCGGTGTTTAAGTCGTCGGCTAGGGTTTTGATTGGAGGATGGTTAGCTATGGCCGTTACTTTTGGTTTGACAAAACTGATTGGGACACATAGTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000302 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0006950 GO:0006979 GO:0008150 GO:0008324 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0032870 GO:0033554 GO:0034220 GO:0034599 GO:0034614 GO:0034755 GO:0035690 GO:0042221 GO:0042493 GO:0042592 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071421 GO:0071495 GO:0071731 GO:0071732 GO:0097366 GO:0097577 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

200

Amino Acids

21.03

Weight (kDa)

7.84

Isoelectric Point (pI)

31.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VIT1	PF01988	31 - 100	1.2e-23	VIT family
VIT1	PF01988	96 - 192	2e-17	VIT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21140 AT1G76800 AT3G43630 AT3G43660
fragaria_vesca	FvH4_2g13960 FvH4_2g13960
malus_domestica	MD05G1023100.v1.1 MD10G1024000.v1.1
prunus_persica	Prupe.8G027700_v2.0.a1
pyrus_communis	pycom05g01460 pycom10g01590
rosa_chinensis	RchiOBHm_Chr6g0275791
rosa_laevigata	RLG00000013431 RLG00000013434
rosa_multiflora	Rmu_sc0005406.1_g000003 Rmu_sc0007822.1_g000005
rosa_roxburghii	Rroxscaffold_7G00192860 Rroxscaffold_7G00192920
rosa_rugosa	Rorug06G0096200 Rorug06G0096200
rosa_samantha	Rh6AG208200 Rh6AG208400 Rh6BG210800 Rh6BG210900 Rh6BG212400 Rh6CG214400 Rh6CG214500 Rh6DG204200
rosa_wichuraiana	Rw6G018150 Rw6G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	125, 179
AatII	GACGTC	1 cut(s)	177
AccB1I	GGYRCC	1 cut(s)	110
AccBSI	CCGCTC	1 cut(s)	488
AccII	CGCG	1 cut(s)	353
AciI	CCGC	8 cut(s)	99, 161, 344, 351, 398, 446, 449, 488
AclWI	GGATC	1 cut(s)	57
AcoI	YGGCCR	1 cut(s)	555
AcvI	CACGTG	1 cut(s)	424
AcyI	GRCGYC	1 cut(s)	174
AdeI	CACNNNGTG	1 cut(s)	16
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgeI	ACCGGT	1 cut(s)	505
AgsI	TTSAA	1 cut(s)	31
AhdI	GACNNNNNGTC	1 cut(s)	594
AluBI	AGCT	5 cut(s)	27, 83, 221, 325, 551
AluI	AGCT	5 cut(s)	27, 83, 221, 325, 551
Alw21I	GWGCWC	1 cut(s)	85
Alw26I	GTCTC	2 cut(s)	133, 253
AlwI	GGATC	1 cut(s)	57
AoxI	GGCC	1 cut(s)	555
ApeKI	GCWGC	2 cut(s)	347, 401
AsiGI	ACCGGT	1 cut(s)	505
AsuHPI	GGTGA	1 cut(s)	463
BanI	GGYRCC	1 cut(s)	110
BanII	GRGCYC	1 cut(s)	85
BbrPI	CACGTG	1 cut(s)	424
Bbv12I	GWGCWC	1 cut(s)	85
BbvI	GCAGC	2 cut(s)	334, 388
BccI	CCATC	3 cut(s)	40, 142, 537
BceAI	ACGGC	3 cut(s)	86, 150, 542
BcgI	CGANNNNNNTGC	4 cut(s)	217, 251, 319, 353
BcoDI	GTCTC	2 cut(s)	133, 253
BfaI	CTAG	2 cut(s)	35, 525
BisI	GCNGC	7 cut(s)	99, 345, 348, 351, 399, 402, 447
BlsI	GCNGC	7 cut(s)	100, 346, 349, 352, 400, 403, 448
BmeRI	GACNNNNNGTC	1 cut(s)	594
BmiI	GGNNCC	1 cut(s)	112
BplI	GAGNNNNNCTC	2 cut(s)	233, 265
BsaAI	YACGTR	1 cut(s)	424
BsaHI	GRCGYC	1 cut(s)	174
BsaWI	WCCGGW	1 cut(s)	505
BsaXI	ACNNNNNCTCC	6 cut(s)	231, 261, 294, 324, 426, 456
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse118I	RCCGGY	2 cut(s)	203, 505
BseGI	GGATG	1 cut(s)	548
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMII	CTCAG	1 cut(s)	275
BseXI	GCAGC	2 cut(s)	334, 388
Bsh1236I	CGCG	1 cut(s)	353
Bsh1285I	CGRYCG	1 cut(s)	441
BshFI	GGCC	1 cut(s)	557
BshNI	GGYRCC	1 cut(s)	110
BshTI	ACCGGT	1 cut(s)	505
BsiEI	CGRYCG	1 cut(s)	441
BsiHKAI	GWGCWC	1 cut(s)	85
BsiSI	CCGG	3 cut(s)	204, 216, 506
BslFI	GGGAC	1 cut(s)	318
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmAI	GTCTC	2 cut(s)	133, 253
BsmFI	GGGAC	1 cut(s)	318
BsnI	GGCC	1 cut(s)	557
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp143I	GATC	3 cut(s)	49, 186, 438
BspACI	CCGC	8 cut(s)	99, 161, 344, 351, 398, 446, 449, 488
BspANI	GGCC	1 cut(s)	557
BspCNI	CTCAG	1 cut(s)	274
BspFNI	CGCG	1 cut(s)	353
BspHI	TCATGA	1 cut(s)	183
BspLI	GGNNCC	1 cut(s)	112
BspPI	GGATC	1 cut(s)	57
BspT107I	GGYRCC	1 cut(s)	110
BsrBI	CCGCTC	1 cut(s)	488
BsrFI	RCCGGY	2 cut(s)	203, 505
BssAI	RCCGGY	2 cut(s)	203, 505
BssMI	GATC	3 cut(s)	49, 186, 438
BssNI	GRCGYC	1 cut(s)	174
Bst4CI	ACNGT	1 cut(s)	122
Bst6I	CTCTTC	1 cut(s)	284
BstACI	GRCGYC	1 cut(s)	174
BstBAI	YACGTR	1 cut(s)	424
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	2 cut(s)	92, 261
BstF5I	GGATG	1 cut(s)	548
BstFNI	CGCG	1 cut(s)	353
BstKTI	GATC	3 cut(s)	52, 189, 441
BstMAI	GTCTC	2 cut(s)	133, 253
BstMBI	GATC	3 cut(s)	49, 186, 438
BstMCI	CGRYCG	1 cut(s)	441
BstMWI	GCNNNNNNNGC	3 cut(s)	350, 356, 443
BstUI	CGCG	1 cut(s)	353
BstV1I	GCAGC	2 cut(s)	334, 388
BsuRI	GGCC	1 cut(s)	557
BtsCI	GGATG	1 cut(s)	548
Cac8I	GCNNGC	1 cut(s)	342
CciI	TCATGA	1 cut(s)	183
Cfr10I	RCCGGY	2 cut(s)	203, 505
CseI	GACGC	1 cut(s)	342
Csp6I	GTAC	1 cut(s)	265
CspAI	ACCGGT	1 cut(s)	505
CviAII	CATG	4 cut(s)	40, 184, 229, 337
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	2 cut(s)	92, 261
DpnI	GATC	3 cut(s)	51, 188, 440
DpnII	GATC	3 cut(s)	49, 186, 438
DraIII	CACNNNGTG	1 cut(s)	16
DrdI	GACNNNNNNGTC	2 cut(s)	125, 179
DriI	GACNNNNNGTC	1 cut(s)	594
DseDI	GACNNNNNNGTC	2 cut(s)	125, 179
EaeI	YGGCCR	1 cut(s)	555
Eam1104I	CTCTTC	1 cut(s)	284
Eam1105I	GACNNNNNGTC	1 cut(s)	594
EarI	CTCTTC	1 cut(s)	284
Ecl136II	GAGCTC	1 cut(s)	83
Eco24I	GRGCYC	1 cut(s)	85
Eco53kI	GAGCTC	1 cut(s)	83
Eco72I	CACGTG	1 cut(s)	424
EcoICRI	GAGCTC	1 cut(s)	83
EcoT38I	GRGCYC	1 cut(s)	85
FaeI	CATG	4 cut(s)	43, 187, 232, 340
FaiI	YATR	7 cut(s)	41, 146, 185, 230, 338, 554, 594
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	4 cut(s)	39, 183, 228, 336
Fnu4HI	GCNGC	7 cut(s)	99, 345, 348, 351, 399, 402, 447
FokI	GGATG	1 cut(s)	555
FriOI	GRGCYC	1 cut(s)	85
Fsp4HI	GCNGC	7 cut(s)	99, 345, 348, 351, 399, 402, 447
FspBI	CTAG	2 cut(s)	35, 525
GluI	GCNGC	7 cut(s)	99, 345, 348, 351, 399, 402, 447
HaeIII	GGCC	1 cut(s)	557
HapII	CCGG	3 cut(s)	204, 216, 506
HgaI	GACGC	1 cut(s)	342
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	4 cut(s)	43, 187, 232, 340
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	2 cut(s)	5, 331
HpaII	CCGG	3 cut(s)	204, 216, 506
HphI	GGTGA	1 cut(s)	463
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	2 cut(s)	239, 330
Hpy188III	TCNNGA	3 cut(s)	53, 130, 184
Hpy8I	GTNNAC	1 cut(s)	256
Hpy99I	CGWCG	3 cut(s)	122, 136, 523
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4IV	ACGT	3 cut(s)	15, 174, 423
HpyCH4V	TGCA	1 cut(s)	340
HpyF10VI	GCNNNNNNNGC	3 cut(s)	350, 356, 443
HpyF3I	CTNAG	2 cut(s)	92, 261
HpySE526I	ACGT	3 cut(s)	15, 174, 423
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	4 cut(s)	43, 187, 232, 340
Kzo9I	GATC	3 cut(s)	49, 186, 438
LmnI	GCTCC	3 cut(s)	218, 434, 485
LpnPI	CCDG	4 cut(s)	180, 217, 229, 519
Lsp1109I	GCAGC	2 cut(s)	334, 388
MaeI	CTAG	2 cut(s)	35, 525
MaeII	ACGT	3 cut(s)	15, 174, 423
MaeIII	GTNAC	2 cut(s)	451, 559
MalI	GATC	3 cut(s)	51, 188, 440
MbiI	CCGCTC	1 cut(s)	488
MboI	GATC	3 cut(s)	49, 186, 438
MboII	GAAGA	1 cut(s)	301
MhlI	GDGCHC	1 cut(s)	85
MlyI	GAGTC	1 cut(s)	340
MnlI	CCTC	3 cut(s)	268, 296, 533
MseI	TTAA	2 cut(s)	392, 513
MslI	CAYNNNNRTG	2 cut(s)	44, 275
MspI	CCGG	3 cut(s)	204, 216, 506
MvnI	CGCG	1 cut(s)	353
MwoI	GCNNNNNNNGC	3 cut(s)	350, 356, 443
NdeII	GATC	3 cut(s)	49, 186, 438
NlaIII	CATG	4 cut(s)	43, 187, 232, 340
NlaIV	GGNNCC	1 cut(s)	112
NmuCI	GTSAC	1 cut(s)	451
PagI	TCATGA	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	5
PinAI	ACCGGT	1 cut(s)	505
PkrI	GCNGC	7 cut(s)	100, 346, 349, 352, 400, 403, 448
Ple19I	CGATCG	1 cut(s)	441
PleI	GAGTC	1 cut(s)	339
PmaCI	CACGTG	1 cut(s)	424
PmlI	CACGTG	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	339
Ppu21I	YACGTR	1 cut(s)	424
Psp124BI	GAGCTC	1 cut(s)	85
PspCI	CACGTG	1 cut(s)	424
PspN4I	GGNNCC	1 cut(s)	112
PvuI	CGATCG	1 cut(s)	441
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
RseI	CAYNNNNRTG	2 cut(s)	44, 275
SacI	GAGCTC	1 cut(s)	85
SaqAI	TTAA	2 cut(s)	392, 513
SatI	GCNGC	7 cut(s)	99, 345, 348, 351, 399, 402, 447
Sau3AI	GATC	3 cut(s)	49, 186, 438
SchI	GAGTC	1 cut(s)	340
SduI	GDGCHC	1 cut(s)	85
SgrAI	CRCCGGYG	1 cut(s)	505
SmiMI	CAYNNNNRTG	2 cut(s)	44, 275
SsiI	CCGC	8 cut(s)	99, 161, 344, 351, 398, 446, 449, 488
SspMI	CTAG	2 cut(s)	35, 525
SstI	GAGCTC	1 cut(s)	85
TaaI	ACNGT	1 cut(s)	122
TaiI	ACGT	3 cut(s)	18, 177, 426
TaqI	TCGA	3 cut(s)	66, 131, 273
TauI	GCSGC	5 cut(s)	101, 347, 353, 401, 449
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	2 cut(s)	392, 513
Tru9I	TTAA	2 cut(s)	392, 513
TseFI	GTSAC	1 cut(s)	451
TseI	GCWGC	2 cut(s)	347, 401
Tsp45I	GTSAC	1 cut(s)	451
TspDTI	ATGAA	1 cut(s)	302
TspGWI	ACGGA	2 cut(s)	241, 315
XspI	CTAG	2 cut(s)	35, 525
ZraI	GACGTC	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.