Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004934

Physical Location & Seq

Genomic Coordinates Forward (+)

15565224 .. 15566047

Gene Structure 824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G43660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGAATCAAACAACAACAACTTGAACCTAGACATGGAGAAAGATCAAGAAACGACTTTCGACTACTCCAAACGAGCTCAATGGCTACGAGCCGCCGTGCTAGGTGCCAACGATGGTCTTGTCTCAACGGCTTCACTTATGATGGGTATTGGTGCGGTGAAGCAAGACGTCAGAATCATGCTCTTAACCGGTTTTGCCGGTTTAGTGGCCGGAGCTTGTAGCATGGCGATCGGAGAGTTTATCTCCGTTTACTCTCAGTACGACATAGAGGTGGCTCAGATGAAGAGAGAGAGCGGAGGGGAGACAAAGAAAGAGAAGCTTCCAAGTCCAACGCAAGCGGCTATCGCGTCTGCATTAGCATTTACTCTAGGAGCGATTGTGCCGCTATTGGCGGCTGCGTTTGTGAAAGAGTATAAAGTTAGGATTGGAGTGATTGTGGCGGCGGTTACATTGGCGTTAGTGATGTTTGGATGGTTAGGGGCGGTTTTGGGAAAAGCACCAGTGGTTAAGTCGTTGGTTCGGGTTTTGATTGGAGGATGGTTAGCTATGGCCATTACGTTTGGTTTTACAAAACTCGTTGGGTCACATGGTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000302 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0006950 GO:0006979 GO:0008150 GO:0008324 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0032870 GO:0033554 GO:0034220 GO:0034599 GO:0034614 GO:0034755 GO:0035690 GO:0042221 GO:0042493 GO:0042592 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071421 GO:0071495 GO:0071731 GO:0071732 GO:0097366 GO:0097577 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

198

Amino Acids

20.94

Weight (kDa)

9.01

Isoelectric Point (pI)

31.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VIT1	PF01988	29 - 98	7.9e-23	VIT family
VIT1	PF01988	94 - 190	2.8e-18	VIT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21140 AT1G76800 AT3G43630 AT3G43660
fragaria_vesca	FvH4_2g13960 FvH4_2g13960
malus_domestica	MD05G1023100.v1.1 MD10G1024000.v1.1
prunus_persica	Prupe.8G027700_v2.0.a1
pyrus_communis	pycom05g01460 pycom10g01590
rosa_chinensis	RchiOBHm_Chr6g0275791
rosa_laevigata	RLG00000013431 RLG00000013434
rosa_multiflora	Rmu_sc0005406.1_g000003 Rmu_sc0007822.1_g000005
rosa_roxburghii	Rroxscaffold_7G00192860 Rroxscaffold_7G00192920
rosa_rugosa	Rorug06G0096200 Rorug06G0096200
rosa_samantha	Rh6AG208200 Rh6AG208400 Rh6BG210800 Rh6BG210900 Rh6BG212400 Rh6CG214400 Rh6CG214500 Rh6DG204200
rosa_wichuraiana	Rw6G018150 Rw6G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	171
AccB1I	GGYRCC	1 cut(s)	104
AccBSI	CCGCTC	1 cut(s)	294
AccII	CGCG	1 cut(s)	347
AciI	CCGC	9 cut(s)	93, 155, 294, 338, 383, 392, 440, 443, 482
AcoI	YGGCCR	2 cut(s)	207, 549
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	1 cut(s)	260
AfiI	CCNNNNNNNGG	1 cut(s)	34
AgeI	ACCGGT	1 cut(s)	188
AgsI	TTSAA	1 cut(s)	25
AluBI	AGCT	4 cut(s)	77, 215, 319, 545
AluI	AGCT	4 cut(s)	77, 215, 319, 545
Alw21I	GWGCWC	1 cut(s)	79
Alw26I	GTCTC	2 cut(s)	127, 296
AoxI	GGCC	2 cut(s)	207, 549
ApeKI	GCWGC	1 cut(s)	395
AsiGI	ACCGGT	1 cut(s)	188
AsuHPI	GGTGA	1 cut(s)	169
BalI	TGGCCA	1 cut(s)	551
BanI	GGYRCC	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	79
Bbv12I	GWGCWC	1 cut(s)	79
BbvI	GCAGC	1 cut(s)	382
BccI	CCATC	4 cut(s)	107, 136, 465, 531
BceAI	ACGGC	2 cut(s)	80, 144
BcgI	CGANNNNNNTGC	2 cut(s)	211, 245
BcoDI	GTCTC	2 cut(s)	127, 296
BfaI	CTAG	3 cut(s)	29, 101, 368
BisI	GCNGC	6 cut(s)	93, 339, 383, 393, 396, 441
BlsI	GCNGC	6 cut(s)	94, 340, 384, 394, 397, 442
BmiI	GGNNCC	1 cut(s)	106
BplI	GAGNNNNNCTC	2 cut(s)	227, 259
BsaHI	GRCGYC	1 cut(s)	168
BsaWI	WCCGGW	1 cut(s)	188
BsaXI	ACNNNNNCTCC	4 cut(s)	363, 393, 420, 450
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse118I	RCCGGY	2 cut(s)	188, 197
Bse1I	ACTGG	1 cut(s)	500
BseGI	GGATG	2 cut(s)	476, 542
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMII	CTCAG	2 cut(s)	269, 290
BseNI	ACTGG	1 cut(s)	500
BseXI	GCAGC	1 cut(s)	382
Bsh1236I	CGCG	1 cut(s)	347
Bsh1285I	CGRYCG	1 cut(s)	231
BshFI	GGCC	2 cut(s)	209, 551
BshNI	GGYRCC	1 cut(s)	104
BshTI	ACCGGT	1 cut(s)	188
BsiEI	CGRYCG	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	79
BsiSI	CCGG	3 cut(s)	189, 198, 210
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	2 cut(s)	127, 296
BsnI	GGCC	2 cut(s)	209, 551
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	2 cut(s)	43, 228
BspACI	CCGC	9 cut(s)	93, 155, 294, 338, 383, 392, 440, 443, 482
BspANI	GGCC	2 cut(s)	209, 551
BspCNI	CTCAG	2 cut(s)	268, 289
BspFNI	CGCG	1 cut(s)	347
BspLI	GGNNCC	1 cut(s)	106
BspT107I	GGYRCC	1 cut(s)	104
BsrBI	CCGCTC	1 cut(s)	294
BsrFI	RCCGGY	2 cut(s)	188, 197
BsrI	ACTGG	1 cut(s)	500
BssAI	RCCGGY	2 cut(s)	188, 197
BssMI	GATC	2 cut(s)	43, 228
BssNI	GRCGYC	1 cut(s)	168
Bst6I	CTCTTC	1 cut(s)	278
BstACI	GRCGYC	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	2 cut(s)	255, 276
BstF5I	GGATG	2 cut(s)	476, 542
BstFNI	CGCG	1 cut(s)	347
BstKTI	GATC	2 cut(s)	46, 231
BstMAI	GTCTC	2 cut(s)	127, 296
BstMBI	GATC	2 cut(s)	43, 228
BstMCI	CGRYCG	1 cut(s)	231
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstUI	CGCG	1 cut(s)	347
BstV1I	GCAGC	1 cut(s)	382
BsuRI	GGCC	2 cut(s)	209, 551
BtsCI	GGATG	2 cut(s)	476, 542
BtsIMutI	CAGTG	1 cut(s)	507
Cac8I	GCNNGC	1 cut(s)	336
Cfr10I	RCCGGY	2 cut(s)	188, 197
CseI	GACGC	1 cut(s)	336
Csp6I	GTAC	1 cut(s)	259
CspAI	ACCGGT	1 cut(s)	188
CviAII	CATG	4 cut(s)	34, 178, 223, 587
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	2 cut(s)	255, 276
DpnI	GATC	2 cut(s)	45, 230
DpnII	GATC	2 cut(s)	43, 228
EaeI	YGGCCR	2 cut(s)	207, 549
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
Ecl136II	GAGCTC	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	79
Eco53kI	GAGCTC	1 cut(s)	77
EcoICRI	GAGCTC	1 cut(s)	77
EcoT38I	GRGCYC	1 cut(s)	79
FaeI	CATG	4 cut(s)	37, 181, 226, 590
FaiI	YATR	8 cut(s)	35, 140, 179, 224, 266, 414, 548, 588
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
FatI	CATG	4 cut(s)	33, 177, 222, 586
Fnu4HI	GCNGC	6 cut(s)	93, 339, 383, 393, 396, 441
FokI	GGATG	2 cut(s)	483, 549
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	6 cut(s)	93, 339, 383, 393, 396, 441
FspBI	CTAG	3 cut(s)	29, 101, 368
GluI	GCNGC	6 cut(s)	93, 339, 383, 393, 396, 441
HaeIII	GGCC	2 cut(s)	209, 551
HapII	CCGG	3 cut(s)	189, 198, 210
HgaI	GACGC	1 cut(s)	336
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	4 cut(s)	37, 181, 226, 590
HindIII	AAGCTT	1 cut(s)	317
HinfI	GANTC	2 cut(s)	5, 174
HpaII	CCGG	3 cut(s)	189, 198, 210
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	3 cut(s)	173, 233, 279
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	1 cut(s)	250
HpyCH4IV	ACGT	2 cut(s)	168, 557
HpyCH4V	TGCA	1 cut(s)	353
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpyF3I	CTNAG	2 cut(s)	255, 276
HpySE526I	ACGT	2 cut(s)	168, 557
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	4 cut(s)	37, 181, 226, 590
Kzo9I	GATC	2 cut(s)	43, 228
LmnI	GCTCC	2 cut(s)	212, 371
LpnPI	CCDG	4 cut(s)	202, 211, 223, 513
Lsp1109I	GCAGC	1 cut(s)	382
MaeI	CTAG	3 cut(s)	29, 101, 368
MaeII	ACGT	2 cut(s)	168, 557
MaeIII	GTNAC	2 cut(s)	445, 582
MalI	GATC	2 cut(s)	45, 230
MbiI	CCGCTC	1 cut(s)	294
MboI	GATC	2 cut(s)	43, 228
MboII	GAAGA	1 cut(s)	295
MhlI	GDGCHC	1 cut(s)	79
MlsI	TGGCCA	1 cut(s)	551
MluNI	TGGCCA	1 cut(s)	551
MmeI	TCCRAC	1 cut(s)	353
MnlI	CCTC	3 cut(s)	262, 290, 527
Mox20I	TGGCCA	1 cut(s)	551
MscI	TGGCCA	1 cut(s)	551
MseI	TTAA	2 cut(s)	185, 507
MslI	CAYNNNNRTG	1 cut(s)	269
Msp20I	TGGCCA	1 cut(s)	551
MspI	CCGG	3 cut(s)	189, 198, 210
MvnI	CGCG	1 cut(s)	347
MwoI	GCNNNNNNNGC	1 cut(s)	344
NdeII	GATC	2 cut(s)	43, 228
NlaIII	CATG	4 cut(s)	37, 181, 226, 590
NlaIV	GGNNCC	1 cut(s)	106
NmuCI	GTSAC	1 cut(s)	582
PfeI	GAWTC	2 cut(s)	5, 174
PinAI	ACCGGT	1 cut(s)	188
PkrI	GCNGC	6 cut(s)	94, 340, 384, 394, 397, 442
Ple19I	CGATCG	1 cut(s)	231
Psp124BI	GAGCTC	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	106
PvuI	CGATCG	1 cut(s)	231
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
RseI	CAYNNNNRTG	1 cut(s)	269
SacI	GAGCTC	1 cut(s)	79
SaqAI	TTAA	2 cut(s)	185, 507
SatI	GCNGC	6 cut(s)	93, 339, 383, 393, 396, 441
Sau3AI	GATC	2 cut(s)	43, 228
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	9 cut(s)	30, 79, 106, 171, 217, 273, 321, 547, 560
SmiMI	CAYNNNNRTG	1 cut(s)	269
SsiI	CCGC	9 cut(s)	93, 155, 294, 338, 383, 392, 440, 443, 482
SspMI	CTAG	3 cut(s)	29, 101, 368
SstI	GAGCTC	1 cut(s)	79
TaiI	ACGT	2 cut(s)	171, 560
TaqI	TCGA	1 cut(s)	60
TauI	GCSGC	5 cut(s)	95, 341, 385, 395, 443
TfiI	GAWTC	2 cut(s)	5, 174
Tru1I	TTAA	2 cut(s)	185, 507
Tru9I	TTAA	2 cut(s)	185, 507
TscAI	CASTG	1 cut(s)	507
TseFI	GTSAC	1 cut(s)	582
TseI	GCWGC	1 cut(s)	395
Tsp45I	GTSAC	1 cut(s)	582
TspDTI	ATGAA	1 cut(s)	296
TspGWI	ACGGA	1 cut(s)	235
TspRI	CASTG	1 cut(s)	507
XspI	CTAG	3 cut(s)	29, 101, 368
ZraI	GACGTC	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.