Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004934

Physical Location & Seq

Genomic Coordinates Forward (+)

34241579 .. 34242322

Gene Structure 744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00192860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCGCCAAATAGCCAAGAATCCGTAAATGGGGGCAAGTACCCTAACCCAACCATGACCAACCTGGACGTCGAGCGCCAACCCACCCAAGACCTCAATACTTCCCAGGACAACGACGACTTCGACTACTCCAAACGCTCCCAGTGGCTCCGCGCCGCCGTCCTGGGAGCAAACGACGGTCTGATCTCCACCGCGTCGTTAATGATGGGTGTTGGTGCTGTTAAGCAGGACGTTAAAGCCATGATGCTAACCGGGTTTGCCGGCCTAGTAGCCGGTGCCTGCAGCATGGCCATCGGAGAGTTTGTCTCCGTTTACTCCCAGTTGGACATAGAGGTGGCCCAAATGAAGAGAGACAACAACAACAAGCAAAAGAGCCCGGTGGTACACGTGGTAGAAGACGAGGATGGAGAAGAGAAGGAGAACTTGCCAAACCCGTTACGAGCAGACGAGGAGGGAGAAGAGAACTTGCCAAATCCGTTACGAGCAGCAGGTGCATCGGCTCTTGCGTTTGCAGTGGGAGCAATGGTACCACTGCTAGCAGCCTCGTTCATAAGGGAGTATAGGGCGAGGTTGGGAGCTGTGGCGGCGGCAGTGACATTGGCTTTGATGGTGTTTGGGTGGTTAGGAGCAGCTTTGGGGAAGGCACCAGTTCTGAGATCAACGCTTAGGGTTTTGGTTGGTGGGTGGATGGCTATGGCTATAACCTTTGGGTTAACCAAGTCGATTGGATCTACTGGACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0034220 GO:0034755 GO:0042221 GO:0042592 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071421 GO:0097577 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

247

Amino Acids

26.16

Weight (kDa)

4.92

Isoelectric Point (pI)

44.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VIT1	PF01988	50 - 239	5.6e-40	VIT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21140 AT1G76800 AT3G43630 AT3G43660
fragaria_vesca	FvH4_2g13960 FvH4_2g13960
malus_domestica	MD05G1023100.v1.1 MD10G1024000.v1.1
prunus_persica	Prupe.8G027700_v2.0.a1
pyrus_communis	pycom05g01460 pycom10g01590
rosa_chinensis	RchiOBHm_Chr6g0275791
rosa_laevigata	RLG00000013431 RLG00000013434
rosa_multiflora	Rmu_sc0005406.1_g000003 Rmu_sc0007822.1_g000005
rosa_roxburghii	Rroxscaffold_7G00192860 Rroxscaffold_7G00192920
rosa_rugosa	Rorug06G0096200 Rorug06G0096200
rosa_samantha	Rh6AG208200 Rh6AG208400 Rh6BG210800 Rh6BG210900 Rh6BG212400 Rh6CG214400 Rh6CG214500 Rh6DG204200
rosa_wichuraiana	Rw6G018150 Rw6G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	479
AatII	GACGTC	1 cut(s)	72
Acc36I	ACCTGC	1 cut(s)	479
Acc65I	GGTACC	1 cut(s)	526
AccB1I	GGYRCC	4 cut(s)	4, 275, 526, 643
AccII	CGCG	2 cut(s)	153, 194
AciI	CCGC	5 cut(s)	151, 156, 192, 584, 587
AclWI	GGATC	1 cut(s)	736
AcoI	YGGCCR	1 cut(s)	288
AcvI	CACGTG	1 cut(s)	388
AcyI	GRCGYC	2 cut(s)	5, 69
AfaI	GTAC	3 cut(s)	41, 384, 528
AfiI	CCNNNNNNNGG	1 cut(s)	30
AflIII	ACRYGT	1 cut(s)	385
AjnI	CCWGG	3 cut(s)	63, 105, 162
AluBI	AGCT	2 cut(s)	578, 632
AluI	AGCT	2 cut(s)	578, 632
Alw26I	GTCTC	2 cut(s)	310, 345
AlwI	GGATC	1 cut(s)	736
AoxI	GGCC	3 cut(s)	262, 288, 336
ApeKI	GCWGC	4 cut(s)	282, 485, 539, 629
ArsI	GACNNNNNNTTYG	2 cut(s)	586, 618
Asp718I	GGTACC	1 cut(s)	526
AspLEI	GCGC	3 cut(s)	7, 78, 155
AspS9I	GGNCC	1 cut(s)	337
AsuC2I	CCSGG	2 cut(s)	253, 377
AsuNHI	GCTAGC	1 cut(s)	535
BalI	TGGCCA	1 cut(s)	290
BanI	GGYRCC	4 cut(s)	4, 275, 526, 643
BanII	GRGCYC	1 cut(s)	377
BbrPI	CACGTG	1 cut(s)	388
BbsI	GAAGAC	1 cut(s)	402
BbvI	GCAGC	4 cut(s)	294, 497, 551, 641
BccI	CCATC	5 cut(s)	199, 299, 398, 601, 682
BceAI	ACGGC	1 cut(s)	143
BcgI	CGANNNNNNTGC	4 cut(s)	274, 308, 477, 511
BciT130I	CCWGG	3 cut(s)	65, 107, 164
BcnI	CCSGG	2 cut(s)	253, 377
BcoDI	GTCTC	2 cut(s)	310, 345
BfaI	CTAG	2 cut(s)	266, 536
BfmI	CTRYAG	1 cut(s)	280
BfoI	RGCGCY	2 cut(s)	8, 79
BfuAI	ACCTGC	1 cut(s)	479
BisI	GCNGC	7 cut(s)	156, 283, 486, 540, 585, 588, 630
BlsI	GCNGC	7 cut(s)	157, 284, 487, 541, 586, 589, 631
Bme1390I	CCNGG	5 cut(s)	65, 107, 164, 253, 377
BmgT120I	GGNCC	1 cut(s)	337
BmiI	GGNNCC	5 cut(s)	6, 149, 277, 528, 645
BmrFI	CCNGG	5 cut(s)	65, 107, 164, 253, 377
BmrI	ACTGGG	2 cut(s)	136, 313
BmsI	GCATC	2 cut(s)	234, 503
BmtI	GCTAGC	1 cut(s)	539
BmuI	ACTGGG	2 cut(s)	136, 313
BpiI	GAAGAC	1 cut(s)	402
BplI	GAGNNNNNCTC	2 cut(s)	290, 322
Bpu10I	CCTNAGC	1 cut(s)	665
BpuMI	CCSGG	2 cut(s)	253, 377
BsaAI	YACGTR	1 cut(s)	388
BsaHI	GRCGYC	2 cut(s)	5, 69
BsaJI	CCNNGG	2 cut(s)	105, 163
BsaXI	ACNNNNNCTCC	4 cut(s)	288, 318, 510, 540
Bsc4I	CCNNNNNNNGG	1 cut(s)	30
Bse118I	RCCGGY	2 cut(s)	260, 272
Bse1I	ACTGG	4 cut(s)	142, 319, 647, 739
Bse3DI	GCAATG	1 cut(s)	528
BseBI	CCWGG	3 cut(s)	65, 107, 164
BseDI	CCNNGG	2 cut(s)	105, 163
BseGI	GGATG	2 cut(s)	409, 693
BseLI	CCNNNNNNNGG	1 cut(s)	30
BseMI	GCAATG	1 cut(s)	528
BseMII	CTCAG	1 cut(s)	644
BseNI	ACTGG	4 cut(s)	142, 319, 647, 739
BseRI	GAGGAG	1 cut(s)	464
BseXI	GCAGC	4 cut(s)	294, 497, 551, 641
Bsh1236I	CGCG	2 cut(s)	153, 194
BshFI	GGCC	3 cut(s)	264, 290, 338
BshNI	GGYRCC	4 cut(s)	4, 275, 526, 643
BsiSI	CCGG	4 cut(s)	252, 261, 273, 377
BslI	CCNNNNNNNGG	1 cut(s)	30
BsmAI	GTCTC	2 cut(s)	310, 345
BsnI	GGCC	3 cut(s)	264, 290, 338
Bsp1286I	GDGCHC	1 cut(s)	377
Bsp143I	GATC	3 cut(s)	183, 656, 728
BspACI	CCGC	5 cut(s)	151, 156, 192, 584, 587
BspANI	GGCC	3 cut(s)	264, 290, 338
BspCNI	CTCAG	1 cut(s)	645
BspFNI	CGCG	2 cut(s)	153, 194
BspLI	GGNNCC	5 cut(s)	6, 149, 277, 528, 645
BspMAI	CTGCAG	1 cut(s)	284
BspMI	ACCTGC	1 cut(s)	479
BspOI	GCTAGC	1 cut(s)	539
BspPI	GGATC	1 cut(s)	736
BspT107I	GGYRCC	4 cut(s)	4, 275, 526, 643
BsrDI	GCAATG	1 cut(s)	528
BsrFI	RCCGGY	2 cut(s)	260, 272
BsrI	ACTGG	4 cut(s)	142, 319, 647, 739
BssAI	RCCGGY	2 cut(s)	260, 272
BssECI	CCNNGG	2 cut(s)	105, 163
BssMI	GATC	3 cut(s)	183, 656, 728
BssNI	GRCGYC	2 cut(s)	5, 69
Bst2UI	CCWGG	3 cut(s)	65, 107, 164
Bst4CI	ACNGT	2 cut(s)	179, 741
Bst6I	CTCTTC	3 cut(s)	341, 405, 453
BstACI	GRCGYC	2 cut(s)	5, 69
BstAPI	GCANNNNNTGC	1 cut(s)	491
BstBAI	YACGTR	1 cut(s)	388
BstC8I	GCNNGC	3 cut(s)	262, 280, 537
BstDEI	CTNAG	2 cut(s)	653, 665
BstF5I	GGATG	2 cut(s)	409, 693
BstFNI	CGCG	2 cut(s)	153, 194
BstH2I	RGCGCY	2 cut(s)	8, 79
BstHHI	GCGC	3 cut(s)	7, 78, 155
BstKTI	GATC	3 cut(s)	186, 659, 731
BstMAI	GTCTC	2 cut(s)	310, 345
BstMBI	GATC	3 cut(s)	183, 656, 728
BstMWI	GCNNNNNNNGC	3 cut(s)	491, 518, 584
BstNI	CCWGG	3 cut(s)	65, 107, 164
BstSCI	CCNGG	5 cut(s)	63, 105, 162, 251, 375
BstSFI	CTRYAG	1 cut(s)	280
BstUI	CGCG	2 cut(s)	153, 194
BstV1I	GCAGC	4 cut(s)	294, 497, 551, 641
BstV2I	GAAGAC	1 cut(s)	402
BstX2I	RGATCY	1 cut(s)	728
BstYI	RGATCY	1 cut(s)	728
BsuRI	GGCC	3 cut(s)	264, 290, 338
BtsCI	GGATG	2 cut(s)	409, 693
BtsI	GCAGTG	3 cut(s)	519, 530, 597
BtsIMutI	CAGTG	4 cut(s)	149, 519, 530, 597
BveI	ACCTGC	1 cut(s)	479
Cac8I	GCNNGC	3 cut(s)	262, 280, 537
CfoI	GCGC	3 cut(s)	7, 78, 155
Cfr10I	RCCGGY	2 cut(s)	260, 272
Cfr13I	GGNCC	1 cut(s)	337
CseI	GACGC	1 cut(s)	183
Csp6I	GTAC	3 cut(s)	40, 383, 527
CviAII	CATG	3 cut(s)	55, 241, 286
CviQI	GTAC	3 cut(s)	40, 383, 527
DdeI	CTNAG	2 cut(s)	653, 665
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	3 cut(s)	185, 658, 730
DpnII	GATC	3 cut(s)	183, 656, 728
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	3 cut(s)	341, 405, 453
EarI	CTCTTC	3 cut(s)	341, 405, 453
Eco24I	GRGCYC	1 cut(s)	377
Eco72I	CACGTG	1 cut(s)	388
EcoRII	CCWGG	3 cut(s)	63, 105, 162
EcoT38I	GRGCYC	1 cut(s)	377
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaeI	CATG	3 cut(s)	58, 244, 289
FaiI	YATR	8 cut(s)	56, 242, 287, 329, 551, 561, 695, 701
FalI	AAGNNNNNCTT	2 cut(s)	407, 439
FatI	CATG	3 cut(s)	54, 240, 285
Fnu4HI	GCNGC	7 cut(s)	156, 283, 486, 540, 585, 588, 630
FokI	GGATG	2 cut(s)	416, 700
FriOI	GRGCYC	1 cut(s)	377
Fsp4HI	GCNGC	7 cut(s)	156, 283, 486, 540, 585, 588, 630
FspBI	CTAG	2 cut(s)	266, 536
GlaI	GCGC	3 cut(s)	6, 77, 154
GluI	GCNGC	7 cut(s)	156, 283, 486, 540, 585, 588, 630
HaeII	RGCGCY	2 cut(s)	8, 79
HaeIII	GGCC	3 cut(s)	264, 290, 338
HapII	CCGG	4 cut(s)	252, 261, 273, 377
HgaI	GACGC	1 cut(s)	183
HhaI	GCGC	3 cut(s)	7, 78, 155
Hin1I	GRCGYC	2 cut(s)	5, 69
Hin1II	CATG	3 cut(s)	58, 244, 289
Hin6I	GCGC	3 cut(s)	5, 76, 153
HinP1I	GCGC	3 cut(s)	5, 76, 153
HincII	GTYRAC	1 cut(s)	714
HindII	GTYRAC	1 cut(s)	714
HinfI	GANTC	1 cut(s)	20
HpaI	GTTAAC	1 cut(s)	714
HpaII	CCGG	4 cut(s)	252, 261, 273, 377
Hpy166II	GTNNAC	3 cut(s)	313, 385, 714
Hpy188I	TCNGA	3 cut(s)	183, 296, 654
Hpy8I	GTNNAC	3 cut(s)	313, 385, 714
Hpy99I	CGWCG	4 cut(s)	74, 119, 179, 199
HpyAV	CCTTC	2 cut(s)	409, 634
HpyCH4III	ACNGT	2 cut(s)	179, 741
HpyCH4IV	ACGT	3 cut(s)	69, 231, 387
HpyCH4V	TGCA	3 cut(s)	282, 494, 512
HpyF10VI	GCNNNNNNNGC	3 cut(s)	491, 518, 584
HpyF3I	CTNAG	2 cut(s)	653, 665
HpySE526I	ACGT	3 cut(s)	69, 231, 387
Hsp92I	GRCGYC	2 cut(s)	5, 69
Hsp92II	CATG	3 cut(s)	58, 244, 289
HspAI	GCGC	3 cut(s)	5, 76, 153
KasI	GGCGCC	1 cut(s)	4
KpnI	GGTACC	1 cut(s)	530
KroI	GCCGGC	1 cut(s)	260
KroNI	GCCGGC	1 cut(s)	262
KspAI	GTTAAC	1 cut(s)	714
Kzo9I	GATC	3 cut(s)	183, 656, 728
LmnI	GCTCC	6 cut(s)	143, 153, 167, 518, 575, 626
Lsp1109I	GCAGC	4 cut(s)	294, 497, 551, 641
LweI	GCATC	2 cut(s)	234, 503
MaeI	CTAG	2 cut(s)	266, 536
MaeII	ACGT	3 cut(s)	69, 231, 387
MaeIII	GTNAC	3 cut(s)	435, 477, 592
MalI	GATC	3 cut(s)	185, 658, 730
MboI	GATC	3 cut(s)	183, 656, 728
MboII	GAAGA	4 cut(s)	358, 407, 422, 470
MflI	RGATCY	1 cut(s)	728
MhlI	GDGCHC	1 cut(s)	377
MlsI	TGGCCA	1 cut(s)	290
MluNI	TGGCCA	1 cut(s)	290
Mly113I	GGCGCC	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	7 cut(s)	104, 325, 394, 442, 445, 553, 561
Mox20I	TGGCCA	1 cut(s)	290
MroNI	GCCGGC	1 cut(s)	260
MscI	TGGCCA	1 cut(s)	290
MseI	TTAA	4 cut(s)	200, 222, 234, 713
MslI	CAYNNNNRTG	1 cut(s)	332
Msp20I	TGGCCA	1 cut(s)	290
MspI	CCGG	4 cut(s)	252, 261, 273, 377
MspR9I	CCNGG	5 cut(s)	65, 107, 164, 253, 377
MvaI	CCWGG	3 cut(s)	65, 107, 164
MvnI	CGCG	2 cut(s)	153, 194
MwoI	GCNNNNNNNGC	3 cut(s)	491, 518, 584
NaeI	GCCGGC	1 cut(s)	262
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	2 cut(s)	253, 377
NdeII	GATC	3 cut(s)	183, 656, 728
NgoMIV	GCCGGC	1 cut(s)	260
NheI	GCTAGC	1 cut(s)	535
NlaIII	CATG	3 cut(s)	58, 244, 289
NlaIV	GGNNCC	5 cut(s)	6, 149, 277, 528, 645
NmuCI	GTSAC	1 cut(s)	592
PaqCI	CACCTGC	1 cut(s)	479
PcsI	WCGNNNNNNNCGW	2 cut(s)	120, 503
PdiI	GCCGGC	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	7 cut(s)	157, 284, 487, 541, 586, 589, 631
PluTI	GGCGCC	1 cut(s)	8
PmaCI	CACGTG	1 cut(s)	388
PmlI	CACGTG	1 cut(s)	388
Ppu21I	YACGTR	1 cut(s)	388
Psp6I	CCWGG	3 cut(s)	63, 105, 162
PspCI	CACGTG	1 cut(s)	388
PspGI	CCWGG	3 cut(s)	63, 105, 162
PspN4I	GGNNCC	5 cut(s)	6, 149, 277, 528, 645
PspPI	GGNCC	1 cut(s)	337
PstI	CTGCAG	1 cut(s)	284
PsuI	RGATCY	1 cut(s)	728
RsaI	GTAC	3 cut(s)	41, 384, 528
RsaNI	GTAC	3 cut(s)	40, 383, 527
RseI	CAYNNNNRTG	1 cut(s)	332
SaqAI	TTAA	4 cut(s)	200, 222, 234, 713
SatI	GCNGC	7 cut(s)	156, 283, 486, 540, 585, 588, 630
Sau3AI	GATC	3 cut(s)	183, 656, 728
Sau96I	GGNCC	1 cut(s)	337
ScrFI	CCNGG	5 cut(s)	65, 107, 164, 253, 377
SduI	GDGCHC	1 cut(s)	377
SfaNI	GCATC	2 cut(s)	234, 503
SfcI	CTRYAG	1 cut(s)	280
SfoI	GGCGCC	1 cut(s)	6
SmiMI	CAYNNNNRTG	1 cut(s)	332
SsiI	CCGC	5 cut(s)	151, 156, 192, 584, 587
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	2 cut(s)	266, 536
StyD4I	CCNGG	5 cut(s)	63, 105, 162, 251, 375
TaaI	ACNGT	2 cut(s)	179, 741
TaiI	ACGT	3 cut(s)	72, 234, 390
TaqI	TCGA	3 cut(s)	72, 123, 722
TauI	GCSGC	3 cut(s)	158, 587, 590
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	4 cut(s)	200, 222, 234, 713
Tru9I	TTAA	4 cut(s)	200, 222, 234, 713
TscAI	CASTG	4 cut(s)	149, 519, 537, 597
TseFI	GTSAC	1 cut(s)	592
TseI	GCWGC	4 cut(s)	282, 485, 539, 629
Tsp45I	GTSAC	1 cut(s)	592
TspDTI	ATGAA	2 cut(s)	359, 538
TspGWI	ACGGA	3 cut(s)	13, 298, 465
TspRI	CASTG	4 cut(s)	149, 519, 537, 597
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
XspI	CTAG	2 cut(s)	266, 536
ZraI	GACGTC	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.