Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0004934

Physical Location & Seq

Genomic Coordinates Forward (+)

3872852 .. 3873643

Gene Structure 792 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1023100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGTGTCCTCCACACTTCTCCAATATCTCTCTACTCTCTTCCTCAGTCCACGACACACCCATAAACCCTCATTCCTCATTATCCGCTTCTCCCGTTAATATTTCCATGGCACCAAACAGCCAATCATCCCTAAGTGAAGGCAAGTGTGTCATCCCAATGACCACAAACGACCTCGAGCACCAAACAACCCTAGACCAAAAGGAGTTTGACTACTCCAAACGTTCCCAATGGCTCCGCGCCGCCCTCCTAGGTGCCAGCGATGGATTAATCTCAACTGCGTCGTTAATGATGGGAGTTGGAGCTGTGAGACAAGACATTAAGGCCATGATACTAACCGGGTTCGTGGGACTAGTAGCCGGGGCATGTAGTATGGCCATTGGAGAGTTTGTCTCCGTGTACTCCCAGCTGGACATAGAGGTGGCTCAAATGAAAAGGGACAATCAGAAAAAGAAAAAGAACCAACAAGTACACGTGGTAGAAGATGATGGTGGCGATGGAGATGATGAGGAGAGTCTGCCCAATCCTTTACAAGCAGCAGCTGCATCAGCACTGGCGTTTTCGGTGGGAGCAATGGTCCCATTGCTAGCAGCATCGTTTATAAGGGGGTATAAGGTGAGGTTAGGAGTTGTGGCCGCGGCTGTGAGCTTGGCTTTGGTGGTGTTTGGGTGGTTGGGTGCTAAGTTGGGGAAGGCACCAGTTATGAGATCAGTGATGAGGGTTTTGGTTGGAGGTTGGATGGCCATGGCTATTACCTTTGGGTTAACCAAGTTGATTGGCTCAAGTGGGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0034220 GO:0034755 GO:0042221 GO:0042592 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071421 GO:0097577 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

264

Amino Acids

27.68

Weight (kDa)

6.96

Isoelectric Point (pI)

41.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VIT1	PF01988	78 - 155	2.6e-22	VIT family
VIT1	PF01988	150 - 255	9.7e-20	VIT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21140 AT1G76800 AT3G43630 AT3G43660
fragaria_vesca	FvH4_2g13960 FvH4_2g13960
malus_domestica	MD05G1023100.v1.1 MD10G1024000.v1.1
prunus_persica	Prupe.8G027700_v2.0.a1
pyrus_communis	pycom05g01460 pycom10g01590
rosa_chinensis	RchiOBHm_Chr6g0275791
rosa_laevigata	RLG00000013431 RLG00000013434
rosa_multiflora	Rmu_sc0005406.1_g000003 Rmu_sc0007822.1_g000005
rosa_roxburghii	Rroxscaffold_7G00192860 Rroxscaffold_7G00192920
rosa_rugosa	Rorug06G0096200 Rorug06G0096200
rosa_samantha	Rh6AG208200 Rh6AG208400 Rh6BG210800 Rh6BG210900 Rh6BG212400 Rh6CG214400 Rh6CG214500 Rh6DG204200
rosa_wichuraiana	Rw6G018150 Rw6G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	599
AccB1I	GGYRCC	3 cut(s)	109, 251, 691
AccII	CGCG	2 cut(s)	237, 635
AciI	CCGC	5 cut(s)	84, 235, 240, 633, 635
AclI	AACGTT	1 cut(s)	220
AcoI	YGGCCR	3 cut(s)	372, 630, 738
AcvI	CACGTG	1 cut(s)	472
AfaI	GTAC	2 cut(s)	398, 468
AflIII	ACRYGT	1 cut(s)	469
AhlI	ACTAGT	1 cut(s)	349
AluBI	AGCT	4 cut(s)	302, 406, 539, 645
AluI	AGCT	4 cut(s)	302, 406, 539, 645
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	2 cut(s)	301, 394
AlwNI	CAGNNNCTG	1 cut(s)	539
Ama87I	CYCGRG	1 cut(s)	173
AoxI	GGCC	4 cut(s)	321, 372, 630, 738
ApeKI	GCWGC	4 cut(s)	533, 536, 539, 587
AseI	ATTAAT	1 cut(s)	266
AspA2I	CCTAGG	1 cut(s)	247
AspLEI	GCGC	1 cut(s)	239
AspS9I	GGNCC	1 cut(s)	574
AsuC2I	CCSGG	2 cut(s)	337, 358
AsuHPI	GGTGA	1 cut(s)	625
AsuNHI	GCTAGC	1 cut(s)	583
AvaI	CYCGRG	1 cut(s)	173
AvaII	GGWCC	1 cut(s)	574
AvrII	CCTAGG	1 cut(s)	247
BalI	TGGCCA	2 cut(s)	374, 740
BanI	GGYRCC	3 cut(s)	109, 251, 691
BbrPI	CACGTG	1 cut(s)	472
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	4 cut(s)	526, 545, 548, 599
BccI	CCATC	5 cut(s)	254, 283, 479, 488, 730
BcnI	CCSGG	2 cut(s)	337, 358
BcoDI	GTCTC	2 cut(s)	301, 394
BcuI	ACTAGT	1 cut(s)	349
BfaI	CTAG	4 cut(s)	191, 248, 350, 584
BisI	GCNGC	7 cut(s)	240, 534, 537, 540, 588, 633, 636
BlnI	CCTAGG	1 cut(s)	247
BlsI	GCNGC	7 cut(s)	241, 535, 538, 541, 589, 634, 637
Bme1390I	CCNGG	2 cut(s)	337, 358
Bme18I	GGWCC	1 cut(s)	574
BmeT110I	CYCGRG	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	574
BmiI	GGNNCC	5 cut(s)	111, 233, 253, 576, 693
BmrFI	CCNGG	2 cut(s)	337, 358
BmsI	GCATC	2 cut(s)	551, 599
BmtI	GCTAGC	1 cut(s)	587
BplI	GAGNNNNNCTC	2 cut(s)	374, 406
BpuEI	CTTGAG	1 cut(s)	763
BpuMI	CCSGG	2 cut(s)	337, 358
BsaAI	YACGTR	1 cut(s)	472
BsaJI	CCNNGG	5 cut(s)	105, 247, 357, 633, 741
BsaXI	ACNNNNNCTCC	4 cut(s)	372, 402, 558, 588
Bse1I	ACTGG	2 cut(s)	555, 695
Bse3DI	GCAATG	2 cut(s)	576, 578
BseDI	CCNNGG	5 cut(s)	105, 247, 357, 633, 741
BseGI	GGATG	3 cut(s)	125, 150, 741
BseMI	GCAATG	2 cut(s)	576, 578
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	2 cut(s)	555, 695
BseRI	GAGGAG	1 cut(s)	521
BseXI	GCAGC	4 cut(s)	526, 545, 548, 599
BseYI	CCCAGC	1 cut(s)	402
Bsh1236I	CGCG	2 cut(s)	237, 635
BshFI	GGCC	4 cut(s)	323, 374, 632, 740
BshNI	GGYRCC	3 cut(s)	109, 251, 691
BsiHKAI	GWGCWC	1 cut(s)	180
BsiHKCI	CYCGRG	1 cut(s)	173
BsiSI	CCGG	2 cut(s)	336, 357
BslFI	GGGAC	3 cut(s)	360, 449, 560
BsmAI	GTCTC	2 cut(s)	301, 394
BsmFI	GGGAC	3 cut(s)	360, 449, 560
BsnI	GGCC	4 cut(s)	323, 374, 632, 740
BsoBI	CYCGRG	1 cut(s)	173
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	1 cut(s)	704
Bsp19I	CCATGG	2 cut(s)	105, 741
BspACI	CCGC	5 cut(s)	84, 235, 240, 633, 635
BspANI	GGCC	4 cut(s)	323, 374, 632, 740
BspCNI	CTCAG	1 cut(s)	56
BspFNI	CGCG	2 cut(s)	237, 635
BspLI	GGNNCC	5 cut(s)	111, 233, 253, 576, 693
BspOI	GCTAGC	1 cut(s)	587
BspT107I	GGYRCC	3 cut(s)	109, 251, 691
BsrDI	GCAATG	2 cut(s)	576, 578
BsrI	ACTGG	2 cut(s)	555, 695
BssECI	CCNNGG	5 cut(s)	105, 247, 357, 633, 741
BssMI	GATC	1 cut(s)	704
BssT1I	CCWWGG	3 cut(s)	105, 247, 741
Bst6I	CTCTTC	1 cut(s)	43
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstBAI	YACGTR	1 cut(s)	472
BstC8I	GCNNGC	2 cut(s)	256, 585
BstDEI	CTNAG	3 cut(s)	43, 131, 678
BstDSI	CCRYGG	3 cut(s)	105, 633, 741
BstF5I	GGATG	3 cut(s)	125, 150, 741
BstFNI	CGCG	2 cut(s)	237, 635
BstHHI	GCGC	1 cut(s)	239
BstKTI	GATC	1 cut(s)	707
BstMAI	GTCTC	2 cut(s)	301, 394
BstMBI	GATC	1 cut(s)	704
BstMWI	GCNNNNNNNGC	2 cut(s)	539, 545
BstNSI	RCATGY	1 cut(s)	366
BstSCI	CCNGG	2 cut(s)	335, 356
BstUI	CGCG	2 cut(s)	237, 635
BstV1I	GCAGC	4 cut(s)	526, 545, 548, 599
BsuRI	GGCC	4 cut(s)	323, 374, 632, 740
BtgI	CCRYGG	3 cut(s)	105, 633, 741
BtgZI	GCGATG	2 cut(s)	273, 507
BtsCI	GGATG	3 cut(s)	125, 150, 741
BtsIMutI	CAGTG	2 cut(s)	548, 714
Cac8I	GCNNGC	2 cut(s)	256, 585
CaiI	CAGNNNCTG	1 cut(s)	539
CfoI	GCGC	1 cut(s)	239
Cfr13I	GGNCC	1 cut(s)	574
Cfr42I	CCGCGG	1 cut(s)	636
CseI	GACGC	1 cut(s)	267
Csp6I	GTAC	2 cut(s)	397, 467
CviAII	CATG	4 cut(s)	106, 325, 363, 742
CviQI	GTAC	2 cut(s)	397, 467
DdeI	CTNAG	3 cut(s)	43, 131, 678
DpnI	GATC	1 cut(s)	706
DpnII	GATC	1 cut(s)	704
EaeI	YGGCCR	3 cut(s)	372, 630, 738
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
Eco130I	CCWWGG	3 cut(s)	105, 247, 741
Eco47I	GGWCC	1 cut(s)	574
Eco72I	CACGTG	1 cut(s)	472
Eco88I	CYCGRG	1 cut(s)	173
EcoT14I	CCWWGG	3 cut(s)	105, 247, 741
ErhI	CCWWGG	3 cut(s)	105, 247, 741
FaeI	CATG	4 cut(s)	109, 328, 366, 745
FaqI	GGGAC	3 cut(s)	360, 449, 560
FatI	CATG	4 cut(s)	105, 324, 362, 741
Fnu4HI	GCNGC	7 cut(s)	240, 534, 537, 540, 588, 633, 636
FokI	GGATG	3 cut(s)	112, 137, 748
Fsp4HI	GCNGC	7 cut(s)	240, 534, 537, 540, 588, 633, 636
FspBI	CTAG	4 cut(s)	191, 248, 350, 584
GlaI	GCGC	1 cut(s)	238
GluI	GCNGC	7 cut(s)	240, 534, 537, 540, 588, 633, 636
GsaI	CCCAGC	1 cut(s)	406
HaeIII	GGCC	4 cut(s)	323, 374, 632, 740
HapII	CCGG	2 cut(s)	336, 357
HgaI	GACGC	1 cut(s)	267
HhaI	GCGC	1 cut(s)	239
Hin1II	CATG	4 cut(s)	109, 328, 366, 745
Hin6I	GCGC	1 cut(s)	237
HinP1I	GCGC	1 cut(s)	237
HincII	GTYRAC	1 cut(s)	762
HindII	GTYRAC	1 cut(s)	762
HinfI	GANTC	1 cut(s)	511
HpaI	GTTAAC	1 cut(s)	762
HpaII	CCGG	2 cut(s)	336, 357
HphI	GGTGA	1 cut(s)	625
Hpy166II	GTNNAC	4 cut(s)	49, 397, 469, 762
Hpy188I	TCNGA	1 cut(s)	444
Hpy8I	GTNNAC	4 cut(s)	49, 397, 469, 762
Hpy99I	CGWCG	1 cut(s)	283
HpyAV	CCTTC	2 cut(s)	131, 682
HpyCH4IV	ACGT	2 cut(s)	220, 471
HpyCH4V	TGCA	1 cut(s)	542
HpyF10VI	GCNNNNNNNGC	2 cut(s)	539, 545
HpyF3I	CTNAG	3 cut(s)	43, 131, 678
HpySE526I	ACGT	2 cut(s)	220, 471
Hsp92II	CATG	4 cut(s)	109, 328, 366, 745
HspAI	GCGC	1 cut(s)	237
KspAI	GTTAAC	1 cut(s)	762
KspI	CCGCGG	1 cut(s)	636
Kzo9I	GATC	1 cut(s)	704
LmnI	GCTCC	3 cut(s)	237, 299, 566
LpnPI	CCDG	7 cut(s)	268, 349, 370, 392, 416, 536, 708
Lsp1109I	GCAGC	4 cut(s)	526, 545, 548, 599
LweI	GCATC	2 cut(s)	551, 599
MaeI	CTAG	4 cut(s)	191, 248, 350, 584
MaeII	ACGT	2 cut(s)	220, 471
MalI	GATC	1 cut(s)	706
MboI	GATC	1 cut(s)	704
MboII	GAAGA	2 cut(s)	30, 491
MhlI	GDGCHC	1 cut(s)	180
MlsI	TGGCCA	2 cut(s)	374, 740
MluNI	TGGCCA	2 cut(s)	374, 740
MlyI	GAGTC	1 cut(s)	520
MmeI	TCCRAC	3 cut(s)	277, 706, 713
Mox20I	TGGCCA	2 cut(s)	374, 740
MscI	TGGCCA	2 cut(s)	374, 740
MseI	TTAA	5 cut(s)	96, 266, 284, 318, 761
MslI	CAYNNNNRTG	2 cut(s)	155, 416
Msp20I	TGGCCA	2 cut(s)	374, 740
MspA1I	CMGCKG	3 cut(s)	406, 539, 635
MspI	CCGG	2 cut(s)	336, 357
MspR9I	CCNGG	2 cut(s)	337, 358
MvnI	CGCG	2 cut(s)	237, 635
MwoI	GCNNNNNNNGC	2 cut(s)	539, 545
NciI	CCSGG	2 cut(s)	337, 358
NcoI	CCATGG	2 cut(s)	105, 741
NdeII	GATC	1 cut(s)	704
NheI	GCTAGC	1 cut(s)	583
NlaIII	CATG	4 cut(s)	109, 328, 366, 745
NlaIV	GGNNCC	5 cut(s)	111, 233, 253, 576, 693
NspI	RCATGY	1 cut(s)	366
PaeR7I	CTCGAG	1 cut(s)	173
PkrI	GCNGC	7 cut(s)	241, 535, 538, 541, 589, 634, 637
PleI	GAGTC	1 cut(s)	519
PmaCI	CACGTG	1 cut(s)	472
PmlI	CACGTG	1 cut(s)	472
PpsI	GAGTC	1 cut(s)	519
Ppu21I	YACGTR	1 cut(s)	472
PshBI	ATTAAT	1 cut(s)	266
PsiI	TTATAA	1 cut(s)	599
Psp1406I	AACGTT	1 cut(s)	220
PspCI	CACGTG	1 cut(s)	472
PspFI	CCCAGC	1 cut(s)	402
PspN4I	GGNNCC	5 cut(s)	111, 233, 253, 576, 693
PspPI	GGNCC	1 cut(s)	574
PspXI	VCTCGAGB	1 cut(s)	173
PstNI	CAGNNNCTG	1 cut(s)	539
PvuII	CAGCTG	2 cut(s)	406, 539
RsaI	GTAC	2 cut(s)	398, 468
RsaNI	GTAC	2 cut(s)	397, 467
RseI	CAYNNNNRTG	2 cut(s)	155, 416
SacII	CCGCGG	1 cut(s)	636
SaqAI	TTAA	5 cut(s)	96, 266, 284, 318, 761
SatI	GCNGC	7 cut(s)	240, 534, 537, 540, 588, 633, 636
Sau3AI	GATC	1 cut(s)	704
Sau96I	GGNCC	1 cut(s)	574
SchI	GAGTC	1 cut(s)	520
ScrFI	CCNGG	2 cut(s)	337, 358
SduI	GDGCHC	1 cut(s)	180
SfaNI	GCATC	2 cut(s)	551, 599
Sfr274I	CTCGAG	1 cut(s)	173
Sfr303I	CCGCGG	1 cut(s)	636
SgrBI	CCGCGG	1 cut(s)	636
SinI	GGWCC	1 cut(s)	574
SlaI	CTCGAG	1 cut(s)	173
SmiMI	CAYNNNNRTG	2 cut(s)	155, 416
SmlI	CTYRAG	2 cut(s)	173, 778
SmoI	CTYRAG	2 cut(s)	173, 778
SpeI	ACTAGT	1 cut(s)	349
SsiI	CCGC	5 cut(s)	84, 235, 240, 633, 635
SspI	AATATT	1 cut(s)	100
SspMI	CTAG	4 cut(s)	191, 248, 350, 584
StyD4I	CCNGG	2 cut(s)	335, 356
StyI	CCWWGG	3 cut(s)	105, 247, 741
TaiI	ACGT	2 cut(s)	223, 474
TaqI	TCGA	1 cut(s)	174
TatI	WGTACW	2 cut(s)	396, 466
TauI	GCSGC	3 cut(s)	242, 635, 638
Tru1I	TTAA	5 cut(s)	96, 266, 284, 318, 761
Tru9I	TTAA	5 cut(s)	96, 266, 284, 318, 761
TscAI	CASTG	2 cut(s)	555, 714
TseI	GCWGC	4 cut(s)	533, 536, 539, 587
TspDTI	ATGAA	1 cut(s)	443
TspGWI	ACGGA	1 cut(s)	382
TspRI	CASTG	2 cut(s)	555, 714
VpaK11BI	GGWCC	1 cut(s)	574
VspI	ATTAAT	1 cut(s)	266
XceI	RCATGY	1 cut(s)	366
XhoI	CTCGAG	1 cut(s)	173
XmaJI	CCTAGG	1 cut(s)	247
XspI	CTAG	4 cut(s)	191, 248, 350, 584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.