Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004934

Physical Location & Seq

Genomic Coordinates Forward (+)

2520244 .. 2521322

Gene Structure 1079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G027700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCGCCAAACAGCCAAACATCCCTTAACGAAGTCAAGTGTGCCATCCCAATCACCACAAACGACCTAGAACACCAACAAACCCTAGATCAAAACGAGTTCGACTACTCAAAACGCTCCCAGTGGCTTCGCGCTGCCGTCCTAGGCGCCAATGATGGCTTAATCTCAACGGCGTCGTTGATGATGGGCGTGGGAGCTGTCAAGGAAGACATCAAGGCCATGATCCTAACTGGGTTCGCCGGACTAGTAGCCGGGGCATGCAGCATGGCCATTGGAGAGTTTGTCTCTGTGTACTCCCAGTTGGACATAGAGGTGGCTCAAATGAAAAGGGACGATCAGAACAAGCAAAAGACTCCGGCACACGTGGCGGAAGATGGTGATAGCGAGGGAGACAATGAAAAGGAGAGCCTGCCCAACCCGTTGCAAGCTGCGGCTGCTTCAGCTCTTGCGTTTTCAGTAGGGGCAATGGTCCCATTGCTAGCAGCTTCGTTCATAAGGGAGTATAAGGTGAGGTTAGGAGTTGTGGCTGCAGCTGTGAGCTTGGCTTTGGTGGTGTTTGGGTGGTTGGGGGCTAAATTAGGGAAGGCACCAATTATGAGATCAATGATGAGGGTTTTGGTTGGAGGTTGGATGGCCATGGCTATAACCTTTGGGTTAACCAAGTTGATTGGCTCTAGTGGGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0034220 GO:0034755 GO:0042221 GO:0042592 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071421 GO:0097577 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

229

Amino Acids

24.08

Weight (kDa)

5.44

Isoelectric Point (pI)

36.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21140 AT1G76800 AT3G43630 AT3G43660
fragaria_vesca	FvH4_2g13960 FvH4_2g13960
malus_domestica	MD05G1023100.v1.1 MD10G1024000.v1.1
prunus_persica	Prupe.8G027700_v2.0.a1
pyrus_communis	pycom05g01460 pycom10g01590
rosa_chinensis	RchiOBHm_Chr6g0275791
rosa_laevigata	RLG00000013431 RLG00000013434
rosa_multiflora	Rmu_sc0005406.1_g000003 Rmu_sc0007822.1_g000005
rosa_roxburghii	Rroxscaffold_7G00192860 Rroxscaffold_7G00192920
rosa_rugosa	Rorug06G0096200 Rorug06G0096200
rosa_samantha	Rh6AG208200 Rh6AG208400 Rh6BG210800 Rh6BG210900 Rh6BG212400 Rh6CG214400 Rh6CG214500 Rh6DG204200
rosa_wichuraiana	Rw6G018150 Rw6G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	4, 146, 586
AccII	CGCG	1 cut(s)	132
AciI	CCGC	2 cut(s)	368, 431
AclWI	GGATC	1 cut(s)	217
AcoI	YGGCCR	2 cut(s)	267, 633
AcuI	CTGAAG	1 cut(s)	423
AcvI	CACGTG	1 cut(s)	364
AcyI	GRCGYC	3 cut(s)	5, 147, 173
AfaI	GTAC	1 cut(s)	293
AflIII	ACRYGT	1 cut(s)	361
AhlI	ACTAGT	1 cut(s)	244
AluBI	AGCT	6 cut(s)	197, 428, 443, 485, 533, 540
AluI	AGCT	6 cut(s)	197, 428, 443, 485, 533, 540
Alw26I	GTCTC	2 cut(s)	289, 384
AlwI	GGATC	1 cut(s)	217
AoxI	GGCC	3 cut(s)	216, 267, 633
ApeKI	GCWGC	7 cut(s)	134, 261, 428, 434, 482, 527, 530
AspA2I	CCTAGG	1 cut(s)	142
AspLEI	GCGC	3 cut(s)	7, 134, 149
AspS9I	GGNCC	1 cut(s)	469
AsuC2I	CCSGG	1 cut(s)	253
AsuHPI	GGTGA	3 cut(s)	46, 389, 520
AsuNHI	GCTAGC	1 cut(s)	478
AvaII	GGWCC	1 cut(s)	469
AvrII	CCTAGG	1 cut(s)	142
BalI	TGGCCA	2 cut(s)	269, 635
BanI	GGYRCC	3 cut(s)	4, 146, 586
BbrPI	CACGTG	1 cut(s)	364
BbsI	GAAGAC	1 cut(s)	213
BbvI	GCAGC	7 cut(s)	121, 273, 415, 421, 494, 514, 542
BccI	CCATC	5 cut(s)	53, 149, 178, 368, 625
BceAI	ACGGC	2 cut(s)	122, 186
BcnI	CCSGG	1 cut(s)	253
BcoDI	GTCTC	2 cut(s)	289, 384
BcuI	ACTAGT	1 cut(s)	244
BfaI	CTAG	6 cut(s)	68, 86, 143, 245, 479, 675
BfmI	CTRYAG	1 cut(s)	528
BfoI	RGCGCY	2 cut(s)	8, 150
BisI	GCNGC	8 cut(s)	135, 262, 429, 432, 435, 483, 528, 531
BlnI	CCTAGG	1 cut(s)	142
BlsI	GCNGC	8 cut(s)	136, 263, 430, 433, 436, 484, 529, 532
Bme1390I	CCNGG	1 cut(s)	253
Bme18I	GGWCC	1 cut(s)	469
BmgT120I	GGNCC	1 cut(s)	469
BmiI	GGNNCC	4 cut(s)	6, 148, 471, 588
BmrFI	CCNGG	1 cut(s)	253
BmrI	ACTGGG	3 cut(s)	115, 240, 292
BmtI	GCTAGC	1 cut(s)	482
BmuI	ACTGGG	3 cut(s)	115, 240, 292
BpiI	GAAGAC	1 cut(s)	213
BplI	GAGNNNNNCTC	2 cut(s)	269, 301
BpuMI	CCSGG	1 cut(s)	253
BsaAI	YACGTR	1 cut(s)	364
BsaHI	GRCGYC	3 cut(s)	5, 147, 173
BsaJI	CCNNGG	3 cut(s)	142, 252, 636
BsaXI	ACNNNNNCTCC	2 cut(s)	267, 297
Bse1I	ACTGG	3 cut(s)	121, 235, 298
Bse3DI	GCAATG	2 cut(s)	471, 473
BseDI	CCNNGG	3 cut(s)	142, 252, 636
BseGI	GGATG	3 cut(s)	20, 45, 636
BseMI	GCAATG	2 cut(s)	471, 473
BseNI	ACTGG	3 cut(s)	121, 235, 298
BseXI	GCAGC	7 cut(s)	121, 273, 415, 421, 494, 514, 542
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	3 cut(s)	218, 269, 635
BshNI	GGYRCC	3 cut(s)	4, 146, 586
BsiSI	CCGG	3 cut(s)	240, 252, 356
BslFI	GGGAC	2 cut(s)	344, 455
BsmAI	GTCTC	2 cut(s)	289, 384
BsmFI	GGGAC	2 cut(s)	344, 455
BsnI	GGCC	3 cut(s)	218, 269, 635
Bsp143I	GATC	4 cut(s)	88, 222, 334, 599
Bsp19I	CCATGG	1 cut(s)	636
BspACI	CCGC	2 cut(s)	368, 431
BspANI	GGCC	3 cut(s)	218, 269, 635
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	4 cut(s)	6, 148, 471, 588
BspMAI	CTGCAG	1 cut(s)	532
BspOI	GCTAGC	1 cut(s)	482
BspPI	GGATC	1 cut(s)	217
BspT107I	GGYRCC	3 cut(s)	4, 146, 586
BsrDI	GCAATG	2 cut(s)	471, 473
BsrI	ACTGG	3 cut(s)	121, 235, 298
BssECI	CCNNGG	3 cut(s)	142, 252, 636
BssMI	GATC	4 cut(s)	88, 222, 334, 599
BssNI	GRCGYC	3 cut(s)	5, 147, 173
BssT1I	CCWWGG	2 cut(s)	142, 636
BstACI	GRCGYC	3 cut(s)	5, 147, 173
BstBAI	YACGTR	1 cut(s)	364
BstC8I	GCNNGC	4 cut(s)	259, 410, 426, 480
BstDSI	CCRYGG	1 cut(s)	636
BstF5I	GGATG	3 cut(s)	20, 45, 636
BstFNI	CGCG	1 cut(s)	132
BstH2I	RGCGCY	2 cut(s)	8, 150
BstHHI	GCGC	3 cut(s)	7, 134, 149
BstKTI	GATC	4 cut(s)	91, 225, 337, 602
BstMAI	GTCTC	2 cut(s)	289, 384
BstMBI	GATC	4 cut(s)	88, 222, 334, 599
BstMWI	GCNNNNNNNGC	3 cut(s)	365, 434, 440
BstNSI	RCATGY	1 cut(s)	261
BstSCI	CCNGG	1 cut(s)	251
BstSFI	CTRYAG	1 cut(s)	528
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	7 cut(s)	121, 273, 415, 421, 494, 514, 542
BstV2I	GAAGAC	1 cut(s)	213
BsuRI	GGCC	3 cut(s)	218, 269, 635
BtgI	CCRYGG	1 cut(s)	636
BtsCI	GGATG	3 cut(s)	20, 45, 636
BtsIMutI	CAGTG	1 cut(s)	128
Cac8I	GCNNGC	4 cut(s)	259, 410, 426, 480
CfoI	GCGC	3 cut(s)	7, 134, 149
Cfr13I	GGNCC	1 cut(s)	469
CseI	GACGC	1 cut(s)	162
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	4 cut(s)	220, 258, 265, 637
CviQI	GTAC	1 cut(s)	292
DinI	GGCGCC	2 cut(s)	6, 148
DpnI	GATC	4 cut(s)	90, 224, 336, 601
DpnII	GATC	4 cut(s)	88, 222, 334, 599
EaeI	YGGCCR	2 cut(s)	267, 633
EciI	GGCGGA	1 cut(s)	383
Eco130I	CCWWGG	2 cut(s)	142, 636
Eco47I	GGWCC	1 cut(s)	469
Eco57I	CTGAAG	1 cut(s)	423
Eco72I	CACGTG	1 cut(s)	364
EcoT14I	CCWWGG	2 cut(s)	142, 636
EgeI	GGCGCC	2 cut(s)	6, 148
EheI	GGCGCC	2 cut(s)	6, 148
ErhI	CCWWGG	2 cut(s)	142, 636
FaeI	CATG	4 cut(s)	223, 261, 268, 640
FaiI	YATR	9 cut(s)	221, 259, 266, 308, 494, 504, 596, 638, 644
FaqI	GGGAC	2 cut(s)	344, 455
FatI	CATG	4 cut(s)	219, 257, 264, 636
Fnu4HI	GCNGC	8 cut(s)	135, 262, 429, 432, 435, 483, 528, 531
FokI	GGATG	3 cut(s)	7, 32, 643
Fsp4HI	GCNGC	8 cut(s)	135, 262, 429, 432, 435, 483, 528, 531
FspBI	CTAG	6 cut(s)	68, 86, 143, 245, 479, 675
GlaI	GCGC	3 cut(s)	6, 133, 148
GluI	GCNGC	8 cut(s)	135, 262, 429, 432, 435, 483, 528, 531
HaeII	RGCGCY	2 cut(s)	8, 150
HaeIII	GGCC	3 cut(s)	218, 269, 635
HapII	CCGG	3 cut(s)	240, 252, 356
HgaI	GACGC	1 cut(s)	162
HhaI	GCGC	3 cut(s)	7, 134, 149
Hin1I	GRCGYC	3 cut(s)	5, 147, 173
Hin1II	CATG	4 cut(s)	223, 261, 268, 640
Hin6I	GCGC	3 cut(s)	5, 132, 147
HinP1I	GCGC	3 cut(s)	5, 132, 147
HincII	GTYRAC	1 cut(s)	657
HindII	GTYRAC	1 cut(s)	657
HinfI	GANTC	1 cut(s)	352
HpaI	GTTAAC	1 cut(s)	657
HpaII	CCGG	3 cut(s)	240, 252, 356
HphI	GGTGA	3 cut(s)	46, 389, 520
Hpy166II	GTNNAC	2 cut(s)	292, 657
Hpy188I	TCNGA	1 cut(s)	339
Hpy8I	GTNNAC	2 cut(s)	292, 657
Hpy99I	CGWCG	1 cut(s)	178
HpyAV	CCTTC	1 cut(s)	577
HpyCH4IV	ACGT	1 cut(s)	363
HpyCH4V	TGCA	3 cut(s)	261, 424, 530
HpyF10VI	GCNNNNNNNGC	3 cut(s)	365, 434, 440
HpySE526I	ACGT	1 cut(s)	363
Hsp92I	GRCGYC	3 cut(s)	5, 147, 173
Hsp92II	CATG	4 cut(s)	223, 261, 268, 640
HspAI	GCGC	3 cut(s)	5, 132, 147
KasI	GGCGCC	2 cut(s)	4, 146
KspAI	GTTAAC	1 cut(s)	657
Kzo9I	GATC	4 cut(s)	88, 222, 334, 599
LmnI	GCTCC	2 cut(s)	122, 194
LpnPI	CCDG	7 cut(s)	134, 216, 253, 265, 311, 369, 422
Lsp1109I	GCAGC	7 cut(s)	121, 273, 415, 421, 494, 514, 542
MaeI	CTAG	6 cut(s)	68, 86, 143, 245, 479, 675
MaeII	ACGT	1 cut(s)	363
MalI	GATC	4 cut(s)	90, 224, 336, 601
MboI	GATC	4 cut(s)	88, 222, 334, 599
MboII	GAAGA	2 cut(s)	218, 383
MlsI	TGGCCA	2 cut(s)	269, 635
MluCI	AATT	2 cut(s)	575, 591
MluNI	TGGCCA	2 cut(s)	269, 635
Mly113I	GGCGCC	2 cut(s)	5, 147
MlyI	GAGTC	1 cut(s)	346
MmeI	TCCRAC	3 cut(s)	282, 601, 608
MnlI	CCTC	5 cut(s)	304, 379, 504, 603, 617
Mox20I	TGGCCA	2 cut(s)	269, 635
MscI	TGGCCA	2 cut(s)	269, 635
MseI	TTAA	3 cut(s)	27, 161, 656
MslI	CAYNNNNRTG	1 cut(s)	311
Msp20I	TGGCCA	2 cut(s)	269, 635
MspA1I	CMGCKG	1 cut(s)	533
MspI	CCGG	3 cut(s)	240, 252, 356
MspR9I	CCNGG	1 cut(s)	253
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	3 cut(s)	365, 434, 440
NarI	GGCGCC	2 cut(s)	5, 147
NciI	CCSGG	1 cut(s)	253
NcoI	CCATGG	1 cut(s)	636
NdeII	GATC	4 cut(s)	88, 222, 334, 599
NheI	GCTAGC	1 cut(s)	478
NlaIII	CATG	4 cut(s)	223, 261, 268, 640
NlaIV	GGNNCC	4 cut(s)	6, 148, 471, 588
NspI	RCATGY	1 cut(s)	261
PaeI	GCATGC	1 cut(s)	261
PkrI	GCNGC	8 cut(s)	136, 263, 430, 433, 436, 484, 529, 532
PleI	GAGTC	1 cut(s)	346
PluTI	GGCGCC	2 cut(s)	8, 150
PmaCI	CACGTG	1 cut(s)	364
PmlI	CACGTG	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	346
Ppu21I	YACGTR	1 cut(s)	364
PspCI	CACGTG	1 cut(s)	364
PspN4I	GGNNCC	4 cut(s)	6, 148, 471, 588
PspPI	GGNCC	1 cut(s)	469
PstI	CTGCAG	1 cut(s)	532
PvuII	CAGCTG	1 cut(s)	533
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
RseI	CAYNNNNRTG	1 cut(s)	311
SaqAI	TTAA	3 cut(s)	27, 161, 656
SatI	GCNGC	8 cut(s)	135, 262, 429, 432, 435, 483, 528, 531
Sau3AI	GATC	4 cut(s)	88, 222, 334, 599
Sau96I	GGNCC	1 cut(s)	469
SchI	GAGTC	1 cut(s)	346
ScrFI	CCNGG	1 cut(s)	253
SfcI	CTRYAG	1 cut(s)	528
SfoI	GGCGCC	2 cut(s)	6, 148
SinI	GGWCC	1 cut(s)	469
SmiMI	CAYNNNNRTG	1 cut(s)	311
SpeI	ACTAGT	1 cut(s)	244
SphI	GCATGC	1 cut(s)	261
Sse9I	AATT	2 cut(s)	575, 591
SsiI	CCGC	2 cut(s)	368, 431
SspDI	GGCGCC	2 cut(s)	4, 146
SspMI	CTAG	6 cut(s)	68, 86, 143, 245, 479, 675
StyD4I	CCNGG	1 cut(s)	251
StyI	CCWWGG	2 cut(s)	142, 636
TaiI	ACGT	1 cut(s)	366
TaqI	TCGA	1 cut(s)	102
TasI	AATT	2 cut(s)	575, 591
TatI	WGTACW	1 cut(s)	291
TauI	GCSGC	1 cut(s)	434
Tru1I	TTAA	3 cut(s)	27, 161, 656
Tru9I	TTAA	3 cut(s)	27, 161, 656
TscAI	CASTG	1 cut(s)	128
TseI	GCWGC	7 cut(s)	134, 261, 428, 434, 482, 527, 530
TspDTI	ATGAA	3 cut(s)	338, 411, 481
TspRI	CASTG	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	469
XceI	RCATGY	1 cut(s)	261
XmaJI	CCTAGG	1 cut(s)	142
XspI	CTAG	6 cut(s)	68, 86, 143, 245, 479, 675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.