Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004934

Physical Location & Seq

Genomic Coordinates Forward (+)

28829243 .. 28830278

Gene Structure 1036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G76800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGATCAATCAGGTAGTAACACGAACATGGACATAGAGAAGGAATCAACTACATTTGATTACTCCAAACGTTCCCAATGGCTACGTGCGGCCGTGCTCGGAGCCAACGATGGTCTAGTCTCCACCGCGTCGTTGATGATGGGAGTTGGAGCTGTGAAGCATGACGTCAAGGCAATGATTCTCTCCGGATTCGCAGGGATGGTGGCAGGAGCTTGTAGTATGGCCATAGGAGAGTTCGTCTCAGTTTACTCTCAGTACGATATAGAGGTGGCTCAGATGGAGAGAGACAGTGTGGAGATAGAGAAAGAGAAGCTTCCTAGTCCGATGCAAGCCGCGGCTGCGTCTGCCCTTGCGTTTTCCGCAGGTGCGATTGTACCGCTTTTGGCTGCTGCTTTTGTGAAAGAGTATAAGATGAGGATCATTTCGGTTGTGGTGGCGGTTACGGTAGCTCTTATGGTTTTCGGATGGTTAGGAGCAGCGCTAGGGAAGGCACCAGCGGTTAGGTCATCGGCTAGGGTTTTGTTTGGAGGTTGGTTAGCTATGGCGGTTACGTTTGGCTTGACTAAGCTTATTGGGTTATATGGATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000302 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0006950 GO:0006979 GO:0008150 GO:0008324 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0032870 GO:0033554 GO:0034220 GO:0034599 GO:0034614 GO:0034755 GO:0035690 GO:0042221 GO:0042493 GO:0042592 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071421 GO:0071495 GO:0071731 GO:0071732 GO:0097366 GO:0097577 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

196

Amino Acids

20.58

Weight (kDa)

6.58

Isoelectric Point (pI)

42.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VIT1	PF01988	28 - 102	1.2e-23	VIT family
VIT1	PF01988	100 - 188	4.6e-17	VIT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21140 AT1G76800 AT3G43630 AT3G43660
fragaria_vesca	FvH4_2g13960 FvH4_2g13960
malus_domestica	MD05G1023100.v1.1 MD10G1024000.v1.1
prunus_persica	Prupe.8G027700_v2.0.a1
pyrus_communis	pycom05g01460 pycom10g01590
rosa_chinensis	RchiOBHm_Chr6g0275791
rosa_laevigata	RLG00000013431 RLG00000013434
rosa_multiflora	Rmu_sc0005406.1_g000003 Rmu_sc0007822.1_g000005
rosa_roxburghii	Rroxscaffold_7G00192860 Rroxscaffold_7G00192920
rosa_rugosa	Rorug06G0096200 Rorug06G0096200
rosa_samantha	Rh6AG208200 Rh6AG208400 Rh6BG210800 Rh6BG210900 Rh6BG212400 Rh6CG214400 Rh6CG214500 Rh6DG204200
rosa_wichuraiana	Rw6G018150 Rw6G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	353
AatII	GACGTC	1 cut(s)	168
Acc36I	ACCTGC	1 cut(s)	353
AccB1I	GGYRCC	1 cut(s)	490
AccII	CGCG	2 cut(s)	128, 335
AccIII	TCCGGA	1 cut(s)	185
AciI	CCGC	9 cut(s)	89, 126, 333, 335, 360, 377, 437, 497, 545
AclI	AACGTT	1 cut(s)	70
AclWI	GGATC	2 cut(s)	12, 425
AcoI	YGGCCR	2 cut(s)	90, 222
AcyI	GRCGYC	1 cut(s)	165
AfaI	GTAC	2 cut(s)	257, 375
AfeI	AGCGCT	1 cut(s)	480
AluBI	AGCT	6 cut(s)	152, 212, 313, 449, 539, 568
AluI	AGCT	6 cut(s)	152, 212, 313, 449, 539, 568
Alw21I	GWGCWC	1 cut(s)	99
Alw26I	GTCTC	3 cut(s)	124, 244, 279
AlwI	GGATC	2 cut(s)	12, 425
Aor13HI	TCCGGA	1 cut(s)	185
Aor51HI	AGCGCT	1 cut(s)	480
AoxI	GGCC	2 cut(s)	90, 222
ApeKI	GCWGC	4 cut(s)	338, 386, 389, 476
AspLEI	GCGC	1 cut(s)	481
BalI	TGGCCA	1 cut(s)	224
BanI	GGYRCC	1 cut(s)	490
Bbv12I	GWGCWC	1 cut(s)	99
BbvI	GCAGC	4 cut(s)	325, 373, 376, 488
BccI	CCATC	5 cut(s)	104, 133, 193, 271, 459
BceAI	ACGGC	1 cut(s)	77
BcoDI	GTCTC	3 cut(s)	124, 244, 279
BfaI	CTAG	4 cut(s)	116, 318, 482, 513
BfoI	RGCGCY	1 cut(s)	482
BfuAI	ACCTGC	1 cut(s)	353
BisI	GCNGC	7 cut(s)	90, 333, 336, 339, 387, 390, 477
BlsI	GCNGC	7 cut(s)	91, 334, 337, 340, 388, 391, 478
BmiI	GGNNCC	2 cut(s)	103, 492
BmsI	GCATC	1 cut(s)	315
BplI	GAGNNNNNCTC	2 cut(s)	224, 256
BsaAI	YACGTR	1 cut(s)	86
BsaBI	GATNNNNATC	1 cut(s)	416
BsaHI	GRCGYC	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	333
BsaWI	WCCGGW	1 cut(s)	185
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bse3DI	GCAATG	1 cut(s)	180
Bse8I	GATNNNNATC	1 cut(s)	416
BseAI	TCCGGA	1 cut(s)	185
BseDI	CCNNGG	1 cut(s)	333
BseGI	GGATG	2 cut(s)	204, 470
BseJI	GATNNNNATC	1 cut(s)	416
BseMI	GCAATG	1 cut(s)	180
BseMII	CTCAG	3 cut(s)	255, 266, 287
BseX3I	CGGCCG	1 cut(s)	90
BseXI	GCAGC	4 cut(s)	325, 373, 376, 488
Bsh1236I	CGCG	2 cut(s)	128, 335
Bsh1285I	CGRYCG	1 cut(s)	93
BshFI	GGCC	2 cut(s)	92, 224
BshNI	GGYRCC	1 cut(s)	490
BsiEI	CGRYCG	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	186
BsmAI	GTCTC	3 cut(s)	124, 244, 279
BsmBI	CGTCTC	1 cut(s)	244
BsnI	GGCC	2 cut(s)	92, 224
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp13I	TCCGGA	1 cut(s)	185
Bsp143I	GATC	2 cut(s)	4, 417
BspACI	CCGC	9 cut(s)	89, 126, 333, 335, 360, 377, 437, 497, 545
BspANI	GGCC	2 cut(s)	92, 224
BspCNI	CTCAG	3 cut(s)	254, 265, 286
BspEI	TCCGGA	1 cut(s)	185
BspFNI	CGCG	2 cut(s)	128, 335
BspLI	GGNNCC	2 cut(s)	103, 492
BspMI	ACCTGC	1 cut(s)	353
BspPI	GGATC	2 cut(s)	12, 425
BspT107I	GGYRCC	1 cut(s)	490
BsrDI	GCAATG	1 cut(s)	180
BssECI	CCNNGG	1 cut(s)	333
BssMI	GATC	2 cut(s)	4, 417
BssNI	GRCGYC	1 cut(s)	165
Bst4CI	ACNGT	2 cut(s)	290, 445
BstACI	GRCGYC	1 cut(s)	165
BstBAI	YACGTR	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	4 cut(s)	241, 252, 273, 564
BstDSI	CCRYGG	1 cut(s)	333
BstF5I	GGATG	2 cut(s)	204, 470
BstFNI	CGCG	2 cut(s)	128, 335
BstH2I	RGCGCY	1 cut(s)	482
BstHHI	GCGC	1 cut(s)	481
BstKTI	GATC	2 cut(s)	7, 420
BstMAI	GTCTC	3 cut(s)	124, 244, 279
BstMBI	GATC	2 cut(s)	4, 417
BstMCI	CGRYCG	1 cut(s)	93
BstMWI	GCNNNNNNNGC	3 cut(s)	338, 344, 359
BstUI	CGCG	2 cut(s)	128, 335
BstV1I	GCAGC	4 cut(s)	325, 373, 376, 488
BstZI	CGGCCG	1 cut(s)	90
BsuRI	GGCC	2 cut(s)	92, 224
BtgI	CCRYGG	1 cut(s)	333
BtsCI	GGATG	2 cut(s)	204, 470
BtsIMutI	CAGTG	1 cut(s)	295
BveI	ACCTGC	1 cut(s)	353
Cac8I	GCNNGC	1 cut(s)	330
CfoI	GCGC	1 cut(s)	481
Cfr42I	CCGCGG	1 cut(s)	336
CseI	GACGC	2 cut(s)	117, 330
Csp6I	GTAC	2 cut(s)	256, 374
CviAII	CATG	2 cut(s)	28, 161
CviQI	GTAC	2 cut(s)	256, 374
DdeI	CTNAG	4 cut(s)	241, 252, 273, 564
DpnI	GATC	2 cut(s)	6, 419
DpnII	GATC	2 cut(s)	4, 417
EaeI	YGGCCR	2 cut(s)	90, 222
EagI	CGGCCG	1 cut(s)	90
EclXI	CGGCCG	1 cut(s)	90
Eco47III	AGCGCT	1 cut(s)	480
Eco52I	CGGCCG	1 cut(s)	90
Esp3I	CGTCTC	1 cut(s)	244
FaeI	CATG	2 cut(s)	31, 164
FalI	AAGNNNNNCTT	2 cut(s)	297, 329
FatI	CATG	2 cut(s)	27, 160
Fnu4HI	GCNGC	7 cut(s)	90, 333, 336, 339, 387, 390, 477
FokI	GGATG	2 cut(s)	211, 477
Fsp4HI	GCNGC	7 cut(s)	90, 333, 336, 339, 387, 390, 477
FspBI	CTAG	4 cut(s)	116, 318, 482, 513
GlaI	GCGC	1 cut(s)	480
GluI	GCNGC	7 cut(s)	90, 333, 336, 339, 387, 390, 477
HaeII	RGCGCY	1 cut(s)	482
HaeIII	GGCC	2 cut(s)	92, 224
HapII	CCGG	1 cut(s)	186
HgaI	GACGC	2 cut(s)	117, 330
HhaI	GCGC	1 cut(s)	481
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	2 cut(s)	31, 164
Hin6I	GCGC	1 cut(s)	479
HinP1I	GCGC	1 cut(s)	479
HindIII	AAGCTT	2 cut(s)	311, 566
HinfI	GANTC	3 cut(s)	44, 178, 189
HpaII	CCGG	1 cut(s)	186
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	4 cut(s)	101, 276, 324, 464
Hpy188III	TCNNGA	1 cut(s)	186
Hpy8I	GTNNAC	1 cut(s)	247
Hpy99I	CGWCG	1 cut(s)	133
HpyAV	CCTTC	2 cut(s)	34, 481
HpyCH4III	ACNGT	2 cut(s)	290, 445
HpyCH4IV	ACGT	4 cut(s)	70, 85, 165, 551
HpyCH4V	TGCA	1 cut(s)	328
HpyF10VI	GCNNNNNNNGC	3 cut(s)	338, 344, 359
HpyF3I	CTNAG	4 cut(s)	241, 252, 273, 564
HpySE526I	ACGT	4 cut(s)	70, 85, 165, 551
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	2 cut(s)	31, 164
HspAI	GCGC	1 cut(s)	479
Kpn2I	TCCGGA	1 cut(s)	185
KspI	CCGCGG	1 cut(s)	336
Kzo9I	GATC	2 cut(s)	4, 417
LmnI	GCTCC	4 cut(s)	101, 149, 209, 473
LpnPI	CCDG	5 cut(s)	180, 192, 199, 348, 507
Lsp1109I	GCAGC	4 cut(s)	325, 373, 376, 488
LweI	GCATC	1 cut(s)	315
MaeI	CTAG	4 cut(s)	116, 318, 482, 513
MaeII	ACGT	4 cut(s)	70, 85, 165, 551
MaeIII	GTNAC	3 cut(s)	17, 439, 547
MalI	GATC	2 cut(s)	6, 419
MboI	GATC	2 cut(s)	4, 417
MhlI	GDGCHC	1 cut(s)	99
MlsI	TGGCCA	1 cut(s)	224
MluNI	TGGCCA	1 cut(s)	224
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	3 cut(s)	259, 408, 521
Mox20I	TGGCCA	1 cut(s)	224
MroI	TCCGGA	1 cut(s)	185
MscI	TGGCCA	1 cut(s)	224
MslI	CAYNNNNRTG	1 cut(s)	26
Msp20I	TGGCCA	1 cut(s)	224
MspA1I	CMGCKG	2 cut(s)	335, 497
MspI	CCGG	1 cut(s)	186
MvnI	CGCG	2 cut(s)	128, 335
MwoI	GCNNNNNNNGC	3 cut(s)	338, 344, 359
NdeII	GATC	2 cut(s)	4, 417
NlaIII	CATG	2 cut(s)	31, 164
NlaIV	GGNNCC	2 cut(s)	103, 492
PaqCI	CACCTGC	1 cut(s)	353
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PfeI	GAWTC	3 cut(s)	44, 178, 189
PkrI	GCNGC	7 cut(s)	91, 334, 337, 340, 388, 391, 478
Ppu21I	YACGTR	1 cut(s)	86
Psp1406I	AACGTT	1 cut(s)	70
PspN4I	GGNNCC	2 cut(s)	103, 492
RsaI	GTAC	2 cut(s)	257, 375
RsaNI	GTAC	2 cut(s)	256, 374
RseI	CAYNNNNRTG	1 cut(s)	26
SacII	CCGCGG	1 cut(s)	336
SatI	GCNGC	7 cut(s)	90, 333, 336, 339, 387, 390, 477
Sau3AI	GATC	2 cut(s)	4, 417
SduI	GDGCHC	1 cut(s)	99
SfaNI	GCATC	1 cut(s)	315
Sfr303I	CCGCGG	1 cut(s)	336
SgrBI	CCGCGG	1 cut(s)	336
SmiMI	CAYNNNNRTG	1 cut(s)	26
SsiI	CCGC	9 cut(s)	89, 126, 333, 335, 360, 377, 437, 497, 545
SspMI	CTAG	4 cut(s)	116, 318, 482, 513
TaaI	ACNGT	2 cut(s)	290, 445
TaiI	ACGT	4 cut(s)	73, 88, 168, 554
TauI	GCSGC	3 cut(s)	92, 335, 338
TfiI	GAWTC	3 cut(s)	44, 178, 189
TscAI	CASTG	1 cut(s)	295
TseI	GCWGC	4 cut(s)	338, 386, 389, 476
TspRI	CASTG	1 cut(s)	295
XspI	CTAG	4 cut(s)	116, 318, 482, 513
ZraI	GACGTC	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.