Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005406.1

Orthogroup ID

OG0004934

Physical Location & Seq

Genomic Coordinates Forward (+)

38527 .. 39177

Gene Structure 651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005406.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

atgaacaacctcgacctcgagcaccaacccacccaagacctcaatacttccaaggacaacgacgacttcgactactccaaacgctcccagtggctccgcgccgccgtcctgggagccaatgatggcctgatctccaccgcgtcgttaatgatgggtgttggtgctgttaagcaggacattaaagccatgatactaaccgggttcgccggactagtagccggtgcctgcagcatggctatcggagagtttgtctctgtttactcccagttggacatagaggtggcccaaatgaagagagacaacaaaaacaacaagaaaaacagcccggtggtacacgtggtaggagacgaggagggagaagagaaggagaacttgccaaacccgttacaagcagcagctgcatcggctcttgcgttttcagtgggagcaatggtaccactgctagcagcctcgttcataagggagtatggggcgaggttaggagctgtggcggcggcggtgacattggctttgatggtgtttggttggttgggagcagctttggggaaggcaccagttctgagatcaaccattagggttttggttggagggtggatggctatggctataacctttgggttaaccaagttgattggatccagtggactgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0034220 GO:0034755 GO:0042221 GO:0042592 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071421 GO:0097577 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

216

Amino Acids

22.7

Weight (kDa)

5.7

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21140 AT1G76800 AT3G43630 AT3G43660
fragaria_vesca	FvH4_2g13960 FvH4_2g13960
malus_domestica	MD05G1023100.v1.1 MD10G1024000.v1.1
prunus_persica	Prupe.8G027700_v2.0.a1
pyrus_communis	pycom05g01460 pycom10g01590
rosa_chinensis	RchiOBHm_Chr6g0275791
rosa_laevigata	RLG00000013431 RLG00000013434
rosa_multiflora	Rmu_sc0005406.1_g000003 Rmu_sc0007822.1_g000005
rosa_roxburghii	Rroxscaffold_7G00192860 Rroxscaffold_7G00192920
rosa_rugosa	Rorug06G0096200 Rorug06G0096200
rosa_samantha	Rh6AG208200 Rh6AG208400 Rh6BG210800 Rh6BG210900 Rh6BG212400 Rh6CG214400 Rh6CG214500 Rh6DG204200
rosa_wichuraiana	Rw6G018150 Rw6G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	433
AccB1I	GGYRCC	3 cut(s)	221, 433, 550
AccII	CGCG	2 cut(s)	99, 140
AciI	CCGC	6 cut(s)	97, 102, 138, 491, 494, 497
AclWI	GGATC	2 cut(s)	630, 643
AcvI	CACGTG	1 cut(s)	337
AfaI	GTAC	2 cut(s)	333, 435
AflIII	ACRYGT	1 cut(s)	334
AhlI	ACTAGT	1 cut(s)	211
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	3 cut(s)	398, 485, 539
AluI	AGCT	3 cut(s)	398, 485, 539
Alw21I	GWGCWC	1 cut(s)	24
Alw26I	GTCTC	3 cut(s)	256, 291, 339
AlwI	GGATC	2 cut(s)	630, 643
AlwNI	CAGNNNCTG	1 cut(s)	398
Ama87I	CYCGRG	1 cut(s)	17
AoxI	GGCC	2 cut(s)	124, 282
ApeKI	GCWGC	6 cut(s)	228, 392, 395, 398, 446, 536
ArsI	GACNNNNNNTTYG	2 cut(s)	493, 525
Asp718I	GGTACC	1 cut(s)	433
AspLEI	GCGC	1 cut(s)	101
AspS9I	GGNCC	1 cut(s)	283
AsuC2I	CCSGG	2 cut(s)	199, 326
AsuHPI	GGTGA	1 cut(s)	511
AsuNHI	GCTAGC	1 cut(s)	442
AvaI	CYCGRG	1 cut(s)	17
BamHI	GGATCC	1 cut(s)	635
BanI	GGYRCC	3 cut(s)	221, 433, 550
BbrPI	CACGTG	1 cut(s)	337
Bbv12I	GWGCWC	1 cut(s)	24
BbvI	GCAGC	6 cut(s)	240, 385, 404, 407, 458, 548
BccI	CCATC	4 cut(s)	116, 145, 508, 589
BceAI	ACGGC	1 cut(s)	89
BcgI	CGANNNNNNTGC	4 cut(s)	220, 254, 384, 418
BciT130I	CCWGG	1 cut(s)	110
BcnI	CCSGG	2 cut(s)	199, 326
BcoDI	GTCTC	3 cut(s)	256, 291, 339
BcuI	ACTAGT	1 cut(s)	211
BfaI	CTAG	2 cut(s)	212, 443
BfmI	CTRYAG	2 cut(s)	226, 647
BisI	GCNGC	9 cut(s)	102, 229, 393, 396, 399, 447, 492, 495, 537
BlsI	GCNGC	9 cut(s)	103, 230, 394, 397, 400, 448, 493, 496, 538
Bme1390I	CCNGG	3 cut(s)	110, 199, 326
BmeT110I	CYCGRG	1 cut(s)	17
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	6 cut(s)	95, 115, 223, 435, 552, 637
BmrFI	CCNGG	3 cut(s)	110, 199, 326
BmrI	ACTGGG	2 cut(s)	82, 259
BmsI	GCATC	1 cut(s)	410
BmtI	GCTAGC	1 cut(s)	446
BmuI	ACTGGG	2 cut(s)	82, 259
BplI	GAGNNNNNCTC	2 cut(s)	236, 268
BpuMI	CCSGG	2 cut(s)	199, 326
BsaAI	YACGTR	1 cut(s)	337
BsaJI	CCNNGG	2 cut(s)	51, 109
BsaXI	ACNNNNNCTCC	4 cut(s)	234, 264, 417, 447
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	4 cut(s)	88, 265, 554, 639
Bse3DI	GCAATG	1 cut(s)	435
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	2 cut(s)	51, 109
BseGI	GGATG	1 cut(s)	600
BseMI	GCAATG	1 cut(s)	435
BseMII	CTCAG	1 cut(s)	551
BseNI	ACTGG	4 cut(s)	88, 265, 554, 639
BseRI	GAGGAG	1 cut(s)	365
BseXI	GCAGC	6 cut(s)	240, 385, 404, 407, 458, 548
Bsh1236I	CGCG	2 cut(s)	99, 140
BshFI	GGCC	2 cut(s)	126, 284
BshNI	GGYRCC	3 cut(s)	221, 433, 550
BsiHKAI	GWGCWC	1 cut(s)	24
BsiHKCI	CYCGRG	1 cut(s)	17
BsiSI	CCGG	4 cut(s)	198, 207, 219, 326
BsmAI	GTCTC	3 cut(s)	256, 291, 339
BsmBI	CGTCTC	1 cut(s)	339
BsnI	GGCC	2 cut(s)	126, 284
BsoBI	CYCGRG	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp143I	GATC	3 cut(s)	129, 563, 635
BspACI	CCGC	6 cut(s)	97, 102, 138, 491, 494, 497
BspANI	GGCC	2 cut(s)	126, 284
BspCNI	CTCAG	1 cut(s)	552
BspFNI	CGCG	2 cut(s)	99, 140
BspLI	GGNNCC	6 cut(s)	95, 115, 223, 435, 552, 637
BspMAI	CTGCAG	1 cut(s)	230
BspOI	GCTAGC	1 cut(s)	446
BspPI	GGATC	2 cut(s)	630, 643
BspT107I	GGYRCC	3 cut(s)	221, 433, 550
BsrDI	GCAATG	1 cut(s)	435
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	4 cut(s)	88, 265, 554, 639
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	2 cut(s)	51, 109
BssMI	GATC	3 cut(s)	129, 563, 635
BssT1I	CCWWGG	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	1 cut(s)	648
Bst6I	CTCTTC	2 cut(s)	287, 354
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstBAI	YACGTR	1 cut(s)	337
BstC8I	GCNNGC	2 cut(s)	226, 444
BstDEI	CTNAG	1 cut(s)	560
BstF5I	GGATG	1 cut(s)	600
BstFNI	CGCG	2 cut(s)	99, 140
BstHHI	GCGC	1 cut(s)	101
BstKTI	GATC	3 cut(s)	132, 566, 638
BstMAI	GTCTC	3 cut(s)	256, 291, 339
BstMBI	GATC	3 cut(s)	129, 563, 635
BstMWI	GCNNNNNNNGC	3 cut(s)	398, 404, 491
BstNI	CCWGG	1 cut(s)	110
BstSCI	CCNGG	3 cut(s)	108, 197, 324
BstSFI	CTRYAG	2 cut(s)	226, 647
BstUI	CGCG	2 cut(s)	99, 140
BstV1I	GCAGC	6 cut(s)	240, 385, 404, 407, 458, 548
BstX2I	RGATCY	1 cut(s)	635
BstYI	RGATCY	1 cut(s)	635
BsuRI	GGCC	2 cut(s)	126, 284
BtsCI	GGATG	1 cut(s)	600
BtsI	GCAGTG	1 cut(s)	437
BtsIMutI	CAGTG	4 cut(s)	95, 426, 437, 646
Cac8I	GCNNGC	2 cut(s)	226, 444
CaiI	CAGNNNCTG	1 cut(s)	398
CfoI	GCGC	1 cut(s)	101
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	1 cut(s)	283
CseI	GACGC	1 cut(s)	129
Csp6I	GTAC	2 cut(s)	332, 434
CviAII	CATG	2 cut(s)	187, 232
CviQI	GTAC	2 cut(s)	332, 434
DdeI	CTNAG	1 cut(s)	560
DpnI	GATC	3 cut(s)	131, 565, 637
DpnII	GATC	3 cut(s)	129, 563, 635
Eam1104I	CTCTTC	2 cut(s)	287, 354
EarI	CTCTTC	2 cut(s)	287, 354
Eco130I	CCWWGG	1 cut(s)	51
Eco72I	CACGTG	1 cut(s)	337
Eco88I	CYCGRG	1 cut(s)	17
EcoRII	CCWGG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	51
Esp3I	CGTCTC	1 cut(s)	339
FaeI	CATG	2 cut(s)	190, 235
FaiI	YATR	7 cut(s)	188, 233, 275, 458, 468, 602, 608
FalI	AAGNNNNNCTT	2 cut(s)	356, 388
FatI	CATG	2 cut(s)	186, 231
Fnu4HI	GCNGC	9 cut(s)	102, 229, 393, 396, 399, 447, 492, 495, 537
FokI	GGATG	1 cut(s)	607
Fsp4HI	GCNGC	9 cut(s)	102, 229, 393, 396, 399, 447, 492, 495, 537
FspBI	CTAG	2 cut(s)	212, 443
GlaI	GCGC	1 cut(s)	100
GluI	GCNGC	9 cut(s)	102, 229, 393, 396, 399, 447, 492, 495, 537
HaeIII	GGCC	2 cut(s)	126, 284
HapII	CCGG	4 cut(s)	198, 207, 219, 326
HgaI	GACGC	1 cut(s)	129
HhaI	GCGC	1 cut(s)	101
Hin1II	CATG	2 cut(s)	190, 235
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HincII	GTYRAC	1 cut(s)	621
HindII	GTYRAC	1 cut(s)	621
HpaI	GTTAAC	1 cut(s)	621
HpaII	CCGG	4 cut(s)	198, 207, 219, 326
HphI	GGTGA	1 cut(s)	511
Hpy166II	GTNNAC	4 cut(s)	259, 334, 621, 644
Hpy188I	TCNGA	2 cut(s)	242, 561
Hpy8I	GTNNAC	4 cut(s)	259, 334, 621, 644
Hpy99I	CGWCG	2 cut(s)	65, 145
HpyAV	CCTTC	2 cut(s)	358, 541
HpyCH4III	ACNGT	1 cut(s)	648
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	2 cut(s)	228, 401
HpyF10VI	GCNNNNNNNGC	3 cut(s)	398, 404, 491
HpyF3I	CTNAG	1 cut(s)	560
HpySE526I	ACGT	1 cut(s)	336
Hsp92II	CATG	2 cut(s)	190, 235
HspAI	GCGC	1 cut(s)	99
KpnI	GGTACC	1 cut(s)	437
KspAI	GTTAAC	1 cut(s)	621
Kzo9I	GATC	3 cut(s)	129, 563, 635
LmnI	GCTCC	6 cut(s)	89, 99, 113, 425, 482, 533
Lsp1109I	GCAGC	6 cut(s)	240, 385, 404, 407, 458, 548
LweI	GCATC	1 cut(s)	410
MaeI	CTAG	2 cut(s)	212, 443
MaeII	ACGT	1 cut(s)	336
MaeIII	GTNAC	2 cut(s)	384, 499
MalI	GATC	3 cut(s)	131, 565, 637
MboI	GATC	3 cut(s)	129, 563, 635
MboII	GAAGA	2 cut(s)	304, 371
MflI	RGATCY	1 cut(s)	635
MhlI	GDGCHC	1 cut(s)	24
MmeI	TCCRAC	2 cut(s)	249, 565
MnlI	CCTC	9 cut(s)	20, 26, 50, 271, 343, 346, 460, 468, 581
MseI	TTAA	4 cut(s)	146, 168, 180, 620
MslI	CAYNNNNRTG	1 cut(s)	278
MspA1I	CMGCKG	1 cut(s)	398
MspI	CCGG	4 cut(s)	198, 207, 219, 326
MspR9I	CCNGG	3 cut(s)	110, 199, 326
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	2 cut(s)	99, 140
MwoI	GCNNNNNNNGC	3 cut(s)	398, 404, 491
NciI	CCSGG	2 cut(s)	199, 326
NdeII	GATC	3 cut(s)	129, 563, 635
NheI	GCTAGC	1 cut(s)	442
NlaIII	CATG	2 cut(s)	190, 235
NlaIV	GGNNCC	6 cut(s)	95, 115, 223, 435, 552, 637
NmuCI	GTSAC	1 cut(s)	499
PaeR7I	CTCGAG	1 cut(s)	17
PcsI	WCGNNNNNNNCGW	2 cut(s)	66, 410
PkrI	GCNGC	9 cut(s)	103, 230, 394, 397, 400, 448, 493, 496, 538
PmaCI	CACGTG	1 cut(s)	337
PmlI	CACGTG	1 cut(s)	337
Ppu21I	YACGTR	1 cut(s)	337
Psp6I	CCWGG	1 cut(s)	108
PspCI	CACGTG	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	6 cut(s)	95, 115, 223, 435, 552, 637
PspPI	GGNCC	1 cut(s)	283
PspXI	VCTCGAGB	1 cut(s)	17
PstI	CTGCAG	1 cut(s)	230
PstNI	CAGNNNCTG	1 cut(s)	398
PsuI	RGATCY	1 cut(s)	635
PvuII	CAGCTG	1 cut(s)	398
RsaI	GTAC	2 cut(s)	333, 435
RsaNI	GTAC	2 cut(s)	332, 434
RseI	CAYNNNNRTG	1 cut(s)	278
SaqAI	TTAA	4 cut(s)	146, 168, 180, 620
SatI	GCNGC	9 cut(s)	102, 229, 393, 396, 399, 447, 492, 495, 537
Sau3AI	GATC	3 cut(s)	129, 563, 635
Sau96I	GGNCC	1 cut(s)	283
ScrFI	CCNGG	3 cut(s)	110, 199, 326
SduI	GDGCHC	1 cut(s)	24
SfaNI	GCATC	1 cut(s)	410
SfcI	CTRYAG	2 cut(s)	226, 647
Sfr274I	CTCGAG	1 cut(s)	17
SlaI	CTCGAG	1 cut(s)	17
SmiMI	CAYNNNNRTG	1 cut(s)	278
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
SpeI	ACTAGT	1 cut(s)	211
SsiI	CCGC	6 cut(s)	97, 102, 138, 491, 494, 497
SspMI	CTAG	2 cut(s)	212, 443
StyD4I	CCNGG	3 cut(s)	108, 197, 324
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	1 cut(s)	648
TaiI	ACGT	1 cut(s)	339
TaqI	TCGA	3 cut(s)	12, 18, 69
TauI	GCSGC	3 cut(s)	104, 494, 497
Tru1I	TTAA	4 cut(s)	146, 168, 180, 620
Tru9I	TTAA	4 cut(s)	146, 168, 180, 620
TscAI	CASTG	4 cut(s)	95, 426, 444, 646
TseFI	GTSAC	1 cut(s)	499
TseI	GCWGC	6 cut(s)	228, 392, 395, 398, 446, 536
Tsp45I	GTSAC	1 cut(s)	499
TspDTI	ATGAA	3 cut(s)	17, 305, 445
TspRI	CASTG	4 cut(s)	95, 426, 444, 646
XcmI	CCANNNNNNNNNTGG	1 cut(s)	577
XhoI	CTCGAG	1 cut(s)	17
XspI	CTAG	2 cut(s)	212, 443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.