Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004934

Physical Location & Seq

Genomic Coordinates Reverse (-)

36009240 .. 36010049

Gene Structure 810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G018160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGCGTCAAATAGCCAAGAATCAGTAAATGGGGGCAAGTACCCAACCATGACCAACCTGGACCTCGAGCACCAACCCACCCAAGACCTCAATACTTCCCAGGACAACGACGACTTCGACTACTCCAAACGCTCCCAGTGGCTCCGGGCCGCCGTCCTGGGAGCCAACGACGGTCTGATCTCCACCGCGTCGTTAATGATGGGTGTTGGTGCTGTTAAGCAGGACCTTAAAGCCATGATACTAACCGGGTTTGCCGGACTAGTAGCCGGTGCCTGCAGCATGGCCATCGGAGAGTTTGTCTCCGTTTACTCCCAGTTGGACATAGAGGTGGCCCAAATGAAGAGAGACAACAACAACAAGAAAAAGAGCCCAGTGGTACACGTGGTAGAAGACAAGGAGGGAGAAGAGAAGGAGAACTTGCCAAACCCGTTACGAGCAGCCGAGGAGGGAGTAGAGAAGGAGAAGGAGAACTTGCCAAACCCGTTACGAGCAGACGAGGAGGGAGTAGAGAAGGAGAACTTGCCAAACCCGTTACAAGCAGCAGGTGCATCGGCTCTTGCGTTTACAGTGGGAGCAATGGTACCACTGCTAGCAGCCTCGTTCATAAGGGAGTATAGGGCGAGGTTGGGAGCTGTGGCGGCGGCAGTGACATTGGCTTTGATGGTGTTTGGGTGGTTGGGAGCAGCTTTGGGGAAGGCACCAGTTCTGAGATCAACGATTAGGGTTTTGGTTGGAGGGTGGATGGCTATGGCTATAACCTTTGGGCTAACCAAGTTGATTGATCTACTGGACCGTAAGACTAGCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0034220 GO:0034755 GO:0042221 GO:0042592 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071421 GO:0097577 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

269

Amino Acids

28.85

Weight (kDa)

5.14

Isoelectric Point (pI)

40.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VIT1	PF01988	48 - 257	1.7e-49	VIT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21140 AT1G76800 AT3G43630 AT3G43660
fragaria_vesca	FvH4_2g13960 FvH4_2g13960
malus_domestica	MD05G1023100.v1.1 MD10G1024000.v1.1
prunus_persica	Prupe.8G027700_v2.0.a1
pyrus_communis	pycom05g01460 pycom10g01590
rosa_chinensis	RchiOBHm_Chr6g0275791
rosa_laevigata	RLG00000013431 RLG00000013434
rosa_multiflora	Rmu_sc0005406.1_g000003 Rmu_sc0007822.1_g000005
rosa_roxburghii	Rroxscaffold_7G00192860 Rroxscaffold_7G00192920
rosa_rugosa	Rorug06G0096200 Rorug06G0096200
rosa_samantha	Rh6AG208200 Rh6AG208400 Rh6BG210800 Rh6BG210900 Rh6BG212400 Rh6CG214400 Rh6CG214500 Rh6DG204200
rosa_wichuraiana	Rw6G018150 Rw6G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	533
Acc36I	ACCTGC	1 cut(s)	533
Acc65I	GGTACC	1 cut(s)	580
AccB1I	GGYRCC	3 cut(s)	269, 580, 697
AccII	CGCG	1 cut(s)	188
AciI	CCGC	4 cut(s)	150, 186, 638, 641
AcoI	YGGCCR	1 cut(s)	282
AcvI	CACGTG	1 cut(s)	382
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	41, 378, 582
AflIII	ACRYGT	1 cut(s)	379
AhlI	ACTAGT	1 cut(s)	259
AjnI	CCWGG	3 cut(s)	57, 99, 156
AluBI	AGCT	2 cut(s)	632, 686
AluI	AGCT	2 cut(s)	632, 686
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	2 cut(s)	304, 339
Ama87I	CYCGRG	1 cut(s)	65
AoxI	GGCC	3 cut(s)	147, 282, 330
ApeKI	GCWGC	5 cut(s)	276, 437, 539, 593, 683
ArsI	GACNNNNNNTTYG	2 cut(s)	640, 672
Asp718I	GGTACC	1 cut(s)	580
AspS9I	GGNCC	5 cut(s)	61, 147, 223, 331, 790
AsuC2I	CCSGG	2 cut(s)	146, 247
AsuNHI	GCTAGC	1 cut(s)	589
AvaI	CYCGRG	1 cut(s)	65
AvaII	GGWCC	3 cut(s)	61, 223, 790
BalI	TGGCCA	1 cut(s)	284
BanI	GGYRCC	3 cut(s)	269, 580, 697
BanII	GRGCYC	1 cut(s)	371
BbrPI	CACGTG	1 cut(s)	382
BbsI	GAAGAC	1 cut(s)	396
Bbv12I	GWGCWC	1 cut(s)	72
BbvI	GCAGC	5 cut(s)	288, 449, 551, 605, 695
BccI	CCATC	4 cut(s)	193, 293, 655, 736
BceAI	ACGGC	1 cut(s)	137
BcgI	CGANNNNNNTGC	4 cut(s)	268, 302, 531, 565
BciT130I	CCWGG	3 cut(s)	59, 101, 158
BcnI	CCSGG	2 cut(s)	146, 247
BcoDI	GTCTC	2 cut(s)	304, 339
BcuI	ACTAGT	1 cut(s)	259
BfaI	CTAG	3 cut(s)	260, 590, 801
BfmI	CTRYAG	1 cut(s)	274
BfuAI	ACCTGC	1 cut(s)	533
BisI	GCNGC	8 cut(s)	150, 277, 438, 540, 594, 639, 642, 684
BlsI	GCNGC	8 cut(s)	151, 278, 439, 541, 595, 640, 643, 685
Bme1390I	CCNGG	5 cut(s)	59, 101, 146, 158, 247
Bme18I	GGWCC	3 cut(s)	61, 223, 790
BmeT110I	CYCGRG	1 cut(s)	65
BmgT120I	GGNCC	5 cut(s)	61, 147, 223, 331, 790
BmiI	GGNNCC	5 cut(s)	143, 163, 271, 582, 699
BmrFI	CCNGG	5 cut(s)	59, 101, 146, 158, 247
BmrI	ACTGGG	3 cut(s)	130, 307, 365
BmsI	GCATC	1 cut(s)	557
BmtI	GCTAGC	1 cut(s)	593
BmuI	ACTGGG	3 cut(s)	130, 307, 365
BpiI	GAAGAC	1 cut(s)	396
BplI	GAGNNNNNCTC	2 cut(s)	284, 316
BpuMI	CCSGG	2 cut(s)	146, 247
BsaAI	YACGTR	1 cut(s)	382
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	99, 157, 441
BsaXI	ACNNNNNCTCC	4 cut(s)	282, 312, 564, 594
Bse118I	RCCGGY	1 cut(s)	266
Bse1I	ACTGG	6 cut(s)	136, 313, 371, 701, 792, 805
Bse3DI	GCAATG	1 cut(s)	582
BseBI	CCWGG	3 cut(s)	59, 101, 158
BseDI	CCNNGG	3 cut(s)	99, 157, 441
BseGI	GGATG	1 cut(s)	747
BseMI	GCAATG	1 cut(s)	582
BseMII	CTCAG	1 cut(s)	698
BseNI	ACTGG	6 cut(s)	136, 313, 371, 701, 792, 805
BseRI	GAGGAG	2 cut(s)	458, 512
BseXI	GCAGC	5 cut(s)	288, 449, 551, 605, 695
Bsh1236I	CGCG	1 cut(s)	188
BshFI	GGCC	3 cut(s)	149, 284, 332
BshNI	GGYRCC	3 cut(s)	269, 580, 697
BsiHKAI	GWGCWC	1 cut(s)	72
BsiHKCI	CYCGRG	1 cut(s)	65
BsiSI	CCGG	4 cut(s)	145, 246, 255, 267
BsmAI	GTCTC	2 cut(s)	304, 339
BsnI	GGCC	3 cut(s)	149, 284, 332
BsoBI	CYCGRG	1 cut(s)	65
Bsp1286I	GDGCHC	2 cut(s)	72, 371
Bsp143I	GATC	3 cut(s)	177, 710, 781
BspACI	CCGC	4 cut(s)	150, 186, 638, 641
BspANI	GGCC	3 cut(s)	149, 284, 332
BspCNI	CTCAG	1 cut(s)	699
BspFNI	CGCG	1 cut(s)	188
BspLI	GGNNCC	5 cut(s)	143, 163, 271, 582, 699
BspMAI	CTGCAG	1 cut(s)	278
BspMI	ACCTGC	1 cut(s)	533
BspOI	GCTAGC	1 cut(s)	593
BspT107I	GGYRCC	3 cut(s)	269, 580, 697
BsrDI	GCAATG	1 cut(s)	582
BsrFI	RCCGGY	1 cut(s)	266
BsrI	ACTGG	6 cut(s)	136, 313, 371, 701, 792, 805
BssAI	RCCGGY	1 cut(s)	266
BssECI	CCNNGG	3 cut(s)	99, 157, 441
BssMI	GATC	3 cut(s)	177, 710, 781
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	3 cut(s)	59, 101, 158
Bst4CI	ACNGT	3 cut(s)	173, 568, 794
Bst6I	CTCTTC	2 cut(s)	335, 399
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstBAI	YACGTR	1 cut(s)	382
BstC8I	GCNNGC	2 cut(s)	274, 591
BstDEI	CTNAG	1 cut(s)	707
BstF5I	GGATG	1 cut(s)	747
BstFNI	CGCG	1 cut(s)	188
BstKTI	GATC	3 cut(s)	180, 713, 784
BstMAI	GTCTC	2 cut(s)	304, 339
BstMBI	GATC	3 cut(s)	177, 710, 781
BstMWI	GCNNNNNNNGC	2 cut(s)	545, 638
BstNI	CCWGG	3 cut(s)	59, 101, 158
BstSCI	CCNGG	5 cut(s)	57, 99, 144, 156, 245
BstSFI	CTRYAG	1 cut(s)	274
BstUI	CGCG	1 cut(s)	188
BstV1I	GCAGC	5 cut(s)	288, 449, 551, 605, 695
BstV2I	GAAGAC	1 cut(s)	396
BsuRI	GGCC	3 cut(s)	149, 284, 332
BtsCI	GGATG	1 cut(s)	747
BtsI	GCAGTG	2 cut(s)	584, 651
BtsIMutI	CAGTG	5 cut(s)	143, 378, 573, 584, 651
BveI	ACCTGC	1 cut(s)	533
Cac8I	GCNNGC	2 cut(s)	274, 591
Cfr10I	RCCGGY	1 cut(s)	266
Cfr13I	GGNCC	5 cut(s)	61, 147, 223, 331, 790
CseI	GACGC	1 cut(s)	177
Csp6I	GTAC	3 cut(s)	40, 377, 581
CviAII	CATG	3 cut(s)	49, 235, 280
CviQI	GTAC	3 cut(s)	40, 377, 581
DdeI	CTNAG	1 cut(s)	707
DpnI	GATC	3 cut(s)	179, 712, 783
DpnII	GATC	3 cut(s)	177, 710, 781
EaeI	YGGCCR	1 cut(s)	282
Eam1104I	CTCTTC	2 cut(s)	335, 399
EarI	CTCTTC	2 cut(s)	335, 399
Eco24I	GRGCYC	1 cut(s)	371
Eco47I	GGWCC	3 cut(s)	61, 223, 790
Eco72I	CACGTG	1 cut(s)	382
Eco88I	CYCGRG	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	223
EcoRII	CCWGG	3 cut(s)	57, 99, 156
EcoT38I	GRGCYC	1 cut(s)	371
FaeI	CATG	3 cut(s)	52, 238, 283
FaiI	YATR	8 cut(s)	50, 236, 281, 323, 605, 615, 749, 755
FalI	AAGNNNNNCTT	6 cut(s)	401, 433, 455, 487, 503, 535
FatI	CATG	3 cut(s)	48, 234, 279
Fnu4HI	GCNGC	8 cut(s)	150, 277, 438, 540, 594, 639, 642, 684
FokI	GGATG	1 cut(s)	754
FriOI	GRGCYC	1 cut(s)	371
Fsp4HI	GCNGC	8 cut(s)	150, 277, 438, 540, 594, 639, 642, 684
FspBI	CTAG	3 cut(s)	260, 590, 801
GluI	GCNGC	8 cut(s)	150, 277, 438, 540, 594, 639, 642, 684
HaeIII	GGCC	3 cut(s)	149, 284, 332
HapII	CCGG	4 cut(s)	145, 246, 255, 267
HgaI	GACGC	1 cut(s)	177
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	52, 238, 283
HinfI	GANTC	1 cut(s)	20
HpaII	CCGG	4 cut(s)	145, 246, 255, 267
Hpy166II	GTNNAC	3 cut(s)	307, 379, 564
Hpy188I	TCNGA	3 cut(s)	177, 290, 708
Hpy8I	GTNNAC	3 cut(s)	307, 379, 564
Hpy99I	CGWCG	3 cut(s)	113, 173, 193
HpyAV	CCTTC	5 cut(s)	403, 451, 457, 505, 688
HpyCH4III	ACNGT	3 cut(s)	173, 568, 794
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	2 cut(s)	276, 548
HpyF10VI	GCNNNNNNNGC	2 cut(s)	545, 638
HpyF3I	CTNAG	1 cut(s)	707
HpySE526I	ACGT	1 cut(s)	381
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	52, 238, 283
KpnI	GGTACC	1 cut(s)	584
Kzo9I	GATC	3 cut(s)	177, 710, 781
LmnI	GCTCC	6 cut(s)	137, 147, 161, 572, 629, 680
Lsp1109I	GCAGC	5 cut(s)	288, 449, 551, 605, 695
LweI	GCATC	1 cut(s)	557
MaeI	CTAG	3 cut(s)	260, 590, 801
MaeII	ACGT	1 cut(s)	381
MaeIII	GTNAC	4 cut(s)	429, 483, 531, 646
MalI	GATC	3 cut(s)	179, 712, 783
MboI	GATC	3 cut(s)	177, 710, 781
MboII	GAAGA	3 cut(s)	352, 401, 416
MhlI	GDGCHC	2 cut(s)	72, 371
MlsI	TGGCCA	1 cut(s)	284
MluNI	TGGCCA	1 cut(s)	284
MmeI	TCCRAC	2 cut(s)	297, 712
Mox20I	TGGCCA	1 cut(s)	284
MscI	TGGCCA	1 cut(s)	284
MseI	TTAA	3 cut(s)	194, 216, 228
MslI	CAYNNNNRTG	1 cut(s)	326
Msp20I	TGGCCA	1 cut(s)	284
MspI	CCGG	4 cut(s)	145, 246, 255, 267
MspR9I	CCNGG	5 cut(s)	59, 101, 146, 158, 247
MvaI	CCWGG	3 cut(s)	59, 101, 158
MvnI	CGCG	1 cut(s)	188
MwoI	GCNNNNNNNGC	2 cut(s)	545, 638
NciI	CCSGG	2 cut(s)	146, 247
NdeII	GATC	3 cut(s)	177, 710, 781
NheI	GCTAGC	1 cut(s)	589
NlaIII	CATG	3 cut(s)	52, 238, 283
NlaIV	GGNNCC	5 cut(s)	143, 163, 271, 582, 699
NmeAIII	GCCGAG	1 cut(s)	466
NmuCI	GTSAC	1 cut(s)	646
PaeR7I	CTCGAG	1 cut(s)	65
PaqCI	CACCTGC	1 cut(s)	533
PcsI	WCGNNNNNNNCGW	2 cut(s)	114, 557
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	8 cut(s)	151, 278, 439, 541, 595, 640, 643, 685
PmaCI	CACGTG	1 cut(s)	382
PmlI	CACGTG	1 cut(s)	382
Ppu21I	YACGTR	1 cut(s)	382
PpuMI	RGGWCCY	1 cut(s)	223
Psp5II	RGGWCCY	1 cut(s)	223
Psp6I	CCWGG	3 cut(s)	57, 99, 156
PspCI	CACGTG	1 cut(s)	382
PspGI	CCWGG	3 cut(s)	57, 99, 156
PspN4I	GGNNCC	5 cut(s)	143, 163, 271, 582, 699
PspPI	GGNCC	5 cut(s)	61, 147, 223, 331, 790
PspPPI	RGGWCCY	1 cut(s)	223
PspXI	VCTCGAGB	1 cut(s)	65
PstI	CTGCAG	1 cut(s)	278
RsaI	GTAC	3 cut(s)	41, 378, 582
RsaNI	GTAC	3 cut(s)	40, 377, 581
RseI	CAYNNNNRTG	1 cut(s)	326
SaqAI	TTAA	3 cut(s)	194, 216, 228
SatI	GCNGC	8 cut(s)	150, 277, 438, 540, 594, 639, 642, 684
Sau3AI	GATC	3 cut(s)	177, 710, 781
Sau96I	GGNCC	5 cut(s)	61, 147, 223, 331, 790
ScrFI	CCNGG	5 cut(s)	59, 101, 146, 158, 247
SduI	GDGCHC	2 cut(s)	72, 371
SfaNI	GCATC	1 cut(s)	557
SfcI	CTRYAG	1 cut(s)	274
Sfr274I	CTCGAG	1 cut(s)	65
SinI	GGWCC	3 cut(s)	61, 223, 790
SlaI	CTCGAG	1 cut(s)	65
SmiMI	CAYNNNNRTG	1 cut(s)	326
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
SpeI	ACTAGT	1 cut(s)	259
SsiI	CCGC	4 cut(s)	150, 186, 638, 641
SspMI	CTAG	3 cut(s)	260, 590, 801
StyD4I	CCNGG	5 cut(s)	57, 99, 144, 156, 245
TaaI	ACNGT	3 cut(s)	173, 568, 794
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	2 cut(s)	66, 117
TauI	GCSGC	3 cut(s)	152, 641, 644
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	3 cut(s)	194, 216, 228
Tru9I	TTAA	3 cut(s)	194, 216, 228
TscAI	CASTG	5 cut(s)	143, 378, 573, 591, 651
TseFI	GTSAC	1 cut(s)	646
TseI	GCWGC	5 cut(s)	276, 437, 539, 593, 683
Tsp45I	GTSAC	1 cut(s)	646
TspDTI	ATGAA	2 cut(s)	353, 592
TspGWI	ACGGA	1 cut(s)	292
TspRI	CASTG	5 cut(s)	143, 378, 573, 591, 651
VpaK11BI	GGWCC	3 cut(s)	61, 223, 790
XcmI	CCANNNNNNNNNTGG	1 cut(s)	55
XhoI	CTCGAG	1 cut(s)	65
XspI	CTAG	3 cut(s)	260, 590, 801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.