Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004934

Physical Location & Seq

Genomic Coordinates Forward (+)

1787978 .. 1788664

Gene Structure 687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g01460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCGCCAAACAGCCAATCACCCCTAAGTGCAGGCAAGTGTGCCATCCCAATGACCACAAACGACCTCGAGCACCAAACAACCCTAGACCAAAAGGAGTTTGACTACTCCAAACGTTCCCAATGGCTCCGCGCCGCCGTCCTAGGTGCCAACGATGGATTAATCTCAACTGCGTCGTTAATGATGGGAGTTGGAGCTGTGAGACAAGACTTTAAGGCCATGATACTAACCGGGTTCGCCGGACTAGTCGCTGGGGCATGTAGCATGGCCATTGGAGAGTTTGTCTCCGTGTACTCCCAGCTGGACATAGAGGTGGCTCAAATGAAAAGGGACGATCAGAAAAAGAAAAAGAACCAAGAAGTACACGTGGTAGAAGATGATGGTGGCGATGGAGATGATGAGGAGGGTCTGCCCAACCCTTTACAAGCAGCAGCTGCATCAGCACTGGCGTTTTCAGTGGGAGCAATGGTCCCATTGCTAGCAGCGTCGTTTATAAGGCGGTATAAGGTGAGGTTAGGAGTTGTGGCCGCGGCTGTGAGCTTGGCATTGGTGATGTTTGGGTGGTTGGGGGCTAAGTTGGGGAAGGCACCAGTTATGAGATCAGTGACGAGGGTTTTGGTTGGAGGTTGGATGGCCATGGCTATTACCTTTGGGTTAACCAAGTTGATTGGCTCAAGTGGGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0034220 GO:0034755 GO:0042221 GO:0042592 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071421 GO:0097577 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

229

Amino Acids

24.04

Weight (kDa)

7.74

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VIT1	PF01988	43 - 121	9.7e-25	VIT family
VIT1	PF01988	116 - 220	3.1e-19	VIT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21140 AT1G76800 AT3G43630 AT3G43660
fragaria_vesca	FvH4_2g13960 FvH4_2g13960
malus_domestica	MD05G1023100.v1.1 MD10G1024000.v1.1
prunus_persica	Prupe.8G027700_v2.0.a1
pyrus_communis	pycom05g01460 pycom10g01590
rosa_chinensis	RchiOBHm_Chr6g0275791
rosa_laevigata	RLG00000013431 RLG00000013434
rosa_multiflora	Rmu_sc0005406.1_g000003 Rmu_sc0007822.1_g000005
rosa_roxburghii	Rroxscaffold_7G00192860 Rroxscaffold_7G00192920
rosa_rugosa	Rorug06G0096200 Rorug06G0096200
rosa_samantha	Rh6AG208200 Rh6AG208400 Rh6BG210800 Rh6BG210900 Rh6BG212400 Rh6CG214400 Rh6CG214500 Rh6DG204200
rosa_wichuraiana	Rw6G018150 Rw6G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	494
AccB1I	GGYRCC	3 cut(s)	4, 146, 586
AccII	CGCG	2 cut(s)	132, 530
AciI	CCGC	5 cut(s)	130, 135, 499, 528, 530
AclI	AACGTT	1 cut(s)	115
AcoI	YGGCCR	3 cut(s)	267, 525, 633
AcvI	CACGTG	1 cut(s)	367
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	293, 363
AflIII	ACRYGT	1 cut(s)	364
AhlI	ACTAGT	1 cut(s)	244
AluBI	AGCT	4 cut(s)	197, 301, 434, 540
AluI	AGCT	4 cut(s)	197, 301, 434, 540
Alw21I	GWGCWC	1 cut(s)	75
Alw26I	GTCTC	2 cut(s)	196, 289
AlwNI	CAGNNNCTG	1 cut(s)	434
Ama87I	CYCGRG	1 cut(s)	68
AoxI	GGCC	4 cut(s)	216, 267, 525, 633
ApeKI	GCWGC	4 cut(s)	428, 431, 434, 482
ArsI	GACNNNNNNTTYG	2 cut(s)	598, 630
AseI	ATTAAT	1 cut(s)	161
AspA2I	CCTAGG	1 cut(s)	142
AspLEI	GCGC	2 cut(s)	7, 134
AspS9I	GGNCC	1 cut(s)	469
AsuC2I	CCSGG	1 cut(s)	232
AsuHPI	GGTGA	3 cut(s)	12, 520, 562
AsuNHI	GCTAGC	1 cut(s)	478
AvaI	CYCGRG	1 cut(s)	68
AvaII	GGWCC	1 cut(s)	469
AvrII	CCTAGG	1 cut(s)	142
BalI	TGGCCA	2 cut(s)	269, 635
BanI	GGYRCC	3 cut(s)	4, 146, 586
BbrPI	CACGTG	1 cut(s)	367
Bbv12I	GWGCWC	1 cut(s)	75
BbvI	GCAGC	4 cut(s)	421, 440, 443, 494
BccI	CCATC	6 cut(s)	53, 149, 178, 374, 383, 625
BceAI	ACGGC	1 cut(s)	122
BcnI	CCSGG	1 cut(s)	232
BcoDI	GTCTC	2 cut(s)	196, 289
BcuI	ACTAGT	1 cut(s)	244
BfaI	CTAG	4 cut(s)	86, 143, 245, 479
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	7 cut(s)	135, 429, 432, 435, 483, 528, 531
BlnI	CCTAGG	1 cut(s)	142
BlsI	GCNGC	7 cut(s)	136, 430, 433, 436, 484, 529, 532
Bme1390I	CCNGG	1 cut(s)	232
Bme18I	GGWCC	1 cut(s)	469
BmeT110I	CYCGRG	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	469
BmiI	GGNNCC	5 cut(s)	6, 128, 148, 471, 588
BmrFI	CCNGG	1 cut(s)	232
BmsI	GCATC	1 cut(s)	446
BmtI	GCTAGC	1 cut(s)	482
BplI	GAGNNNNNCTC	2 cut(s)	269, 301
BpuEI	CTTGAG	1 cut(s)	658
BpuMI	CCSGG	1 cut(s)	232
BsaAI	YACGTR	1 cut(s)	367
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	142, 528, 636
BsaXI	ACNNNNNCTCC	4 cut(s)	267, 297, 453, 483
Bse1I	ACTGG	2 cut(s)	450, 590
Bse3DI	GCAATG	2 cut(s)	471, 473
BseDI	CCNNGG	3 cut(s)	142, 528, 636
BseGI	GGATG	2 cut(s)	45, 636
BseMI	GCAATG	2 cut(s)	471, 473
BseNI	ACTGG	2 cut(s)	450, 590
BseRI	GAGGAG	1 cut(s)	416
BseXI	GCAGC	4 cut(s)	421, 440, 443, 494
BseYI	CCCAGC	2 cut(s)	251, 297
BsgI	GTGCAG	1 cut(s)	51
Bsh1236I	CGCG	2 cut(s)	132, 530
BshFI	GGCC	4 cut(s)	218, 269, 527, 635
BshNI	GGYRCC	3 cut(s)	4, 146, 586
BsiHKAI	GWGCWC	1 cut(s)	75
BsiHKCI	CYCGRG	1 cut(s)	68
BsiSI	CCGG	2 cut(s)	231, 240
BslFI	GGGAC	2 cut(s)	344, 455
BsmAI	GTCTC	2 cut(s)	196, 289
BsmFI	GGGAC	2 cut(s)	344, 455
BsnI	GGCC	4 cut(s)	218, 269, 527, 635
BsoBI	CYCGRG	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	2 cut(s)	334, 599
Bsp19I	CCATGG	1 cut(s)	636
BspACI	CCGC	5 cut(s)	130, 135, 499, 528, 530
BspANI	GGCC	4 cut(s)	218, 269, 527, 635
BspFNI	CGCG	2 cut(s)	132, 530
BspLI	GGNNCC	5 cut(s)	6, 128, 148, 471, 588
BspOI	GCTAGC	1 cut(s)	482
BspT107I	GGYRCC	3 cut(s)	4, 146, 586
BsrDI	GCAATG	2 cut(s)	471, 473
BsrI	ACTGG	2 cut(s)	450, 590
BssECI	CCNNGG	3 cut(s)	142, 528, 636
BssMI	GATC	2 cut(s)	334, 599
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	142, 636
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstBAI	YACGTR	1 cut(s)	367
BstC8I	GCNNGC	2 cut(s)	34, 480
BstDEI	CTNAG	2 cut(s)	26, 573
BstDSI	CCRYGG	2 cut(s)	528, 636
BstF5I	GGATG	2 cut(s)	45, 636
BstFNI	CGCG	2 cut(s)	132, 530
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 134
BstKTI	GATC	2 cut(s)	337, 602
BstMAI	GTCTC	2 cut(s)	196, 289
BstMBI	GATC	2 cut(s)	334, 599
BstMWI	GCNNNNNNNGC	2 cut(s)	434, 440
BstNSI	RCATGY	1 cut(s)	261
BstSCI	CCNGG	1 cut(s)	230
BstUI	CGCG	2 cut(s)	132, 530
BstV1I	GCAGC	4 cut(s)	421, 440, 443, 494
BsuRI	GGCC	4 cut(s)	218, 269, 527, 635
BtgI	CCRYGG	2 cut(s)	528, 636
BtgZI	GCGATG	1 cut(s)	402
BtsCI	GGATG	2 cut(s)	45, 636
BtsIMutI	CAGTG	3 cut(s)	443, 462, 609
Cac8I	GCNNGC	2 cut(s)	34, 480
CaiI	CAGNNNCTG	1 cut(s)	434
CfoI	GCGC	2 cut(s)	7, 134
Cfr13I	GGNCC	1 cut(s)	469
Cfr42I	CCGCGG	1 cut(s)	531
CseI	GACGC	2 cut(s)	162, 474
Csp6I	GTAC	2 cut(s)	292, 362
CviAII	CATG	4 cut(s)	220, 258, 265, 637
CviQI	GTAC	2 cut(s)	292, 362
DdeI	CTNAG	2 cut(s)	26, 573
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	2 cut(s)	336, 601
DpnII	GATC	2 cut(s)	334, 599
EaeI	YGGCCR	3 cut(s)	267, 525, 633
Eco130I	CCWWGG	2 cut(s)	142, 636
Eco47I	GGWCC	1 cut(s)	469
Eco72I	CACGTG	1 cut(s)	367
Eco88I	CYCGRG	1 cut(s)	68
EcoT14I	CCWWGG	2 cut(s)	142, 636
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	142, 636
FaeI	CATG	4 cut(s)	223, 261, 268, 640
FaiI	YATR	9 cut(s)	221, 259, 266, 308, 494, 504, 596, 638, 685
FaqI	GGGAC	2 cut(s)	344, 455
FatI	CATG	4 cut(s)	219, 257, 264, 636
Fnu4HI	GCNGC	7 cut(s)	135, 429, 432, 435, 483, 528, 531
FokI	GGATG	2 cut(s)	32, 643
Fsp4HI	GCNGC	7 cut(s)	135, 429, 432, 435, 483, 528, 531
FspBI	CTAG	4 cut(s)	86, 143, 245, 479
GlaI	GCGC	2 cut(s)	6, 133
GluI	GCNGC	7 cut(s)	135, 429, 432, 435, 483, 528, 531
GsaI	CCCAGC	2 cut(s)	255, 301
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	4 cut(s)	218, 269, 527, 635
HapII	CCGG	2 cut(s)	231, 240
HgaI	GACGC	2 cut(s)	162, 474
HhaI	GCGC	2 cut(s)	7, 134
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	223, 261, 268, 640
Hin6I	GCGC	2 cut(s)	5, 132
HinP1I	GCGC	2 cut(s)	5, 132
HincII	GTYRAC	1 cut(s)	657
HindII	GTYRAC	1 cut(s)	657
HpaI	GTTAAC	1 cut(s)	657
HpaII	CCGG	2 cut(s)	231, 240
HphI	GGTGA	3 cut(s)	12, 520, 562
Hpy166II	GTNNAC	3 cut(s)	292, 364, 657
Hpy188I	TCNGA	1 cut(s)	339
Hpy8I	GTNNAC	3 cut(s)	292, 364, 657
Hpy99I	CGWCG	2 cut(s)	178, 490
HpyAV	CCTTC	1 cut(s)	577
HpyCH4IV	ACGT	2 cut(s)	115, 366
HpyCH4V	TGCA	2 cut(s)	32, 437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	434, 440
HpyF3I	CTNAG	2 cut(s)	26, 573
HpySE526I	ACGT	2 cut(s)	115, 366
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	223, 261, 268, 640
HspAI	GCGC	2 cut(s)	5, 132
KasI	GGCGCC	1 cut(s)	4
KspAI	GTTAAC	1 cut(s)	657
KspI	CCGCGG	1 cut(s)	531
Kzo9I	GATC	2 cut(s)	334, 599
LmnI	GCTCC	3 cut(s)	132, 194, 461
LpnPI	CCDG	8 cut(s)	18, 237, 244, 253, 287, 311, 431, 603
Lsp1109I	GCAGC	4 cut(s)	421, 440, 443, 494
LweI	GCATC	1 cut(s)	446
MaeI	CTAG	4 cut(s)	86, 143, 245, 479
MaeII	ACGT	2 cut(s)	115, 366
MaeIII	GTNAC	1 cut(s)	604
MalI	GATC	2 cut(s)	336, 601
MboI	GATC	2 cut(s)	334, 599
MboII	GAAGA	1 cut(s)	386
MhlI	GDGCHC	1 cut(s)	75
MlsI	TGGCCA	2 cut(s)	269, 635
MluNI	TGGCCA	2 cut(s)	269, 635
Mly113I	GGCGCC	1 cut(s)	5
MmeI	TCCRAC	3 cut(s)	172, 601, 608
MnlI	CCTC	7 cut(s)	77, 304, 394, 397, 504, 603, 617
Mox20I	TGGCCA	2 cut(s)	269, 635
MscI	TGGCCA	2 cut(s)	269, 635
MseI	TTAA	4 cut(s)	161, 179, 213, 656
MslI	CAYNNNNRTG	2 cut(s)	50, 311
Msp20I	TGGCCA	2 cut(s)	269, 635
MspA1I	CMGCKG	3 cut(s)	301, 434, 530
MspI	CCGG	2 cut(s)	231, 240
MspR9I	CCNGG	1 cut(s)	232
MvnI	CGCG	2 cut(s)	132, 530
MwoI	GCNNNNNNNGC	2 cut(s)	434, 440
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	1 cut(s)	232
NcoI	CCATGG	1 cut(s)	636
NdeII	GATC	2 cut(s)	334, 599
NheI	GCTAGC	1 cut(s)	478
NlaIII	CATG	4 cut(s)	223, 261, 268, 640
NlaIV	GGNNCC	5 cut(s)	6, 128, 148, 471, 588
NmuCI	GTSAC	1 cut(s)	604
NspI	RCATGY	1 cut(s)	261
PaeR7I	CTCGAG	1 cut(s)	68
PkrI	GCNGC	7 cut(s)	136, 430, 433, 436, 484, 529, 532
PluTI	GGCGCC	1 cut(s)	8
PmaCI	CACGTG	1 cut(s)	367
PmlI	CACGTG	1 cut(s)	367
Ppu21I	YACGTR	1 cut(s)	367
PshBI	ATTAAT	1 cut(s)	161
PsiI	TTATAA	1 cut(s)	494
Psp1406I	AACGTT	1 cut(s)	115
PspCI	CACGTG	1 cut(s)	367
PspFI	CCCAGC	2 cut(s)	251, 297
PspN4I	GGNNCC	5 cut(s)	6, 128, 148, 471, 588
PspPI	GGNCC	1 cut(s)	469
PspXI	VCTCGAGB	1 cut(s)	68
PstNI	CAGNNNCTG	1 cut(s)	434
PvuII	CAGCTG	2 cut(s)	301, 434
RsaI	GTAC	2 cut(s)	293, 363
RsaNI	GTAC	2 cut(s)	292, 362
RseI	CAYNNNNRTG	2 cut(s)	50, 311
SacII	CCGCGG	1 cut(s)	531
SaqAI	TTAA	4 cut(s)	161, 179, 213, 656
SatI	GCNGC	7 cut(s)	135, 429, 432, 435, 483, 528, 531
Sau3AI	GATC	2 cut(s)	334, 599
Sau96I	GGNCC	1 cut(s)	469
ScrFI	CCNGG	1 cut(s)	232
SduI	GDGCHC	1 cut(s)	75
SfaNI	GCATC	1 cut(s)	446
SfoI	GGCGCC	1 cut(s)	6
Sfr274I	CTCGAG	1 cut(s)	68
Sfr303I	CCGCGG	1 cut(s)	531
SgrBI	CCGCGG	1 cut(s)	531
SinI	GGWCC	1 cut(s)	469
SlaI	CTCGAG	1 cut(s)	68
SmiMI	CAYNNNNRTG	2 cut(s)	50, 311
SmlI	CTYRAG	2 cut(s)	68, 673
SmoI	CTYRAG	2 cut(s)	68, 673
SpeI	ACTAGT	1 cut(s)	244
SsiI	CCGC	5 cut(s)	130, 135, 499, 528, 530
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	4 cut(s)	86, 143, 245, 479
StyD4I	CCNGG	1 cut(s)	230
StyI	CCWWGG	2 cut(s)	142, 636
TaiI	ACGT	2 cut(s)	118, 369
TaqI	TCGA	1 cut(s)	69
TatI	WGTACW	2 cut(s)	291, 361
TauI	GCSGC	3 cut(s)	137, 530, 533
Tru1I	TTAA	4 cut(s)	161, 179, 213, 656
Tru9I	TTAA	4 cut(s)	161, 179, 213, 656
TscAI	CASTG	3 cut(s)	450, 462, 609
TseFI	GTSAC	1 cut(s)	604
TseI	GCWGC	4 cut(s)	428, 431, 434, 482
Tsp45I	GTSAC	1 cut(s)	604
TspDTI	ATGAA	1 cut(s)	338
TspGWI	ACGGA	1 cut(s)	277
TspRI	CASTG	3 cut(s)	450, 462, 609
VpaK11BI	GGWCC	1 cut(s)	469
VspI	ATTAAT	1 cut(s)	161
XceI	RCATGY	1 cut(s)	261
XhoI	CTCGAG	1 cut(s)	68
XmaJI	CCTAGG	1 cut(s)	142
XspI	CTAG	4 cut(s)	86, 143, 245, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.