Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004934

Physical Location & Seq

Genomic Coordinates Reverse (-)

37131840 .. 37133124

Gene Structure 1285 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG208400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCGTCAAATAGCCAAGAATCAGTAAATGGGGGCAAGTACCCTAACCCAACCATGACCAACCTGGACCTCGAGCACCAACCCACCCAAGACCTCAATACTTCCCAGGACAACGACGACTTCGATTACTCCAAACGCTCCCAGTGGCTCCGCGCCGCCGTCCTGGGAGCCAACGACGGTCTGATCTCCACCGCGTCGTTAATGATGGGTGTTGGTGCTGTTAAGCAGGACCTTAAAGCCATGATACTAACAGGGTTTGCCGGACTAGTAGCCGGTGCCAGCAGCATGGCCATCGGAGAGTATGTCTCCGTTTACTCCCAGTTGGACATAGAGGTGGCCCAAATGAAGAGAGACAACAACAAGAAGCAAAAGAGCCCAGTGGTACACGTGGTAGAAGACAAGGAGGGAGAAGAGAAGGAGAACTTGCCAAACCCGTTACGAGAAGACGAGGAGGGAGTAGAGAAGGAGAACTTGCCAAACCCGTTACAAGCAGCAGGTGCATCGGCTCTTGCGTTTTCAGTGGGAGCAATGGTACCACTGCTAGCAGCCTCGTTCATAAGGGAGTATAGGGCGAGGTTGGGAGCTGTGGCGGCGGCAGCGACATTGGCTTTGATGGTGTTTGGGTGGTTGGGAGCAGCTTTGGGGAAGGCACCAGTTCTGAGATCAACGATTAGGGTTTTGGTTGGAGGGTGGATGGCTATGGCTATAACCTTTGGGTTAACCAAGTTGATTGATCTACTGGACCGTAAGACTAGCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0034220 GO:0034755 GO:0042221 GO:0042592 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071421 GO:0097577 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

253

Amino Acids

27.08

Weight (kDa)

5.19

Isoelectric Point (pI)

41.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VIT1	PF01988	50 - 241	3.5e-42	VIT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21140 AT1G76800 AT3G43630 AT3G43660
fragaria_vesca	FvH4_2g13960 FvH4_2g13960
malus_domestica	MD05G1023100.v1.1 MD10G1024000.v1.1
prunus_persica	Prupe.8G027700_v2.0.a1
pyrus_communis	pycom05g01460 pycom10g01590
rosa_chinensis	RchiOBHm_Chr6g0275791
rosa_laevigata	RLG00000013431 RLG00000013434
rosa_multiflora	Rmu_sc0005406.1_g000003 Rmu_sc0007822.1_g000005
rosa_roxburghii	Rroxscaffold_7G00192860 Rroxscaffold_7G00192920
rosa_rugosa	Rorug06G0096200 Rorug06G0096200
rosa_samantha	Rh6AG208200 Rh6AG208400 Rh6BG210800 Rh6BG210900 Rh6BG212400 Rh6CG214400 Rh6CG214500 Rh6DG204200
rosa_wichuraiana	Rw6G018150 Rw6G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	485
Acc36I	ACCTGC	1 cut(s)	485
Acc65I	GGTACC	1 cut(s)	532
AccB1I	GGYRCC	3 cut(s)	275, 532, 649
AccII	CGCG	2 cut(s)	153, 194
AciI	CCGC	5 cut(s)	151, 156, 192, 590, 593
AcoI	YGGCCR	1 cut(s)	288
AcvI	CACGTG	1 cut(s)	388
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	41, 384, 534
AflIII	ACRYGT	1 cut(s)	385
AhlI	ACTAGT	1 cut(s)	265
AjnI	CCWGG	3 cut(s)	63, 105, 162
AluBI	AGCT	2 cut(s)	584, 638
AluI	AGCT	2 cut(s)	584, 638
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	2 cut(s)	310, 345
Ama87I	CYCGRG	1 cut(s)	71
AoxI	GGCC	2 cut(s)	288, 336
ApeKI	GCWGC	5 cut(s)	282, 491, 545, 596, 635
ArsI	GACNNNNNNTTYG	2 cut(s)	592, 624
Asp718I	GGTACC	1 cut(s)	532
AspLEI	GCGC	1 cut(s)	155
AspS9I	GGNCC	4 cut(s)	67, 229, 337, 742
AsuNHI	GCTAGC	1 cut(s)	541
AvaI	CYCGRG	1 cut(s)	71
AvaII	GGWCC	3 cut(s)	67, 229, 742
BalI	TGGCCA	1 cut(s)	290
BanI	GGYRCC	3 cut(s)	275, 532, 649
BanII	GRGCYC	1 cut(s)	377
BbrPI	CACGTG	1 cut(s)	388
BbsI	GAAGAC	2 cut(s)	402, 450
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	5 cut(s)	294, 503, 557, 608, 647
BccI	CCATC	4 cut(s)	199, 299, 607, 688
BceAI	ACGGC	1 cut(s)	143
BcgI	CGANNNNNNTGC	4 cut(s)	274, 308, 483, 517
BciT130I	CCWGG	3 cut(s)	65, 107, 164
BcoDI	GTCTC	2 cut(s)	310, 345
BcuI	ACTAGT	1 cut(s)	265
BfaI	CTAG	3 cut(s)	266, 542, 753
BfuAI	ACCTGC	1 cut(s)	485
BisI	GCNGC	8 cut(s)	156, 283, 492, 546, 591, 594, 597, 636
BlsI	GCNGC	8 cut(s)	157, 284, 493, 547, 592, 595, 598, 637
Bme1390I	CCNGG	3 cut(s)	65, 107, 164
Bme18I	GGWCC	3 cut(s)	67, 229, 742
BmeT110I	CYCGRG	1 cut(s)	71
BmgT120I	GGNCC	4 cut(s)	67, 229, 337, 742
BmiI	GGNNCC	5 cut(s)	149, 169, 277, 534, 651
BmrFI	CCNGG	3 cut(s)	65, 107, 164
BmrI	ACTGGG	3 cut(s)	136, 313, 371
BmsI	GCATC	1 cut(s)	509
BmtI	GCTAGC	1 cut(s)	545
BmuI	ACTGGG	3 cut(s)	136, 313, 371
BpiI	GAAGAC	2 cut(s)	402, 450
BplI	GAGNNNNNCTC	2 cut(s)	290, 322
BsaAI	YACGTR	1 cut(s)	388
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	105, 163
BsaXI	ACNNNNNCTCC	4 cut(s)	288, 318, 516, 546
Bse118I	RCCGGY	1 cut(s)	272
Bse1I	ACTGG	6 cut(s)	142, 319, 377, 653, 744, 757
Bse3DI	GCAATG	1 cut(s)	534
BseBI	CCWGG	3 cut(s)	65, 107, 164
BseDI	CCNNGG	2 cut(s)	105, 163
BseGI	GGATG	1 cut(s)	699
BseMI	GCAATG	1 cut(s)	534
BseMII	CTCAG	1 cut(s)	650
BseNI	ACTGG	6 cut(s)	142, 319, 377, 653, 744, 757
BseRI	GAGGAG	1 cut(s)	464
BseXI	GCAGC	5 cut(s)	294, 503, 557, 608, 647
Bsh1236I	CGCG	2 cut(s)	153, 194
BshFI	GGCC	2 cut(s)	290, 338
BshNI	GGYRCC	3 cut(s)	275, 532, 649
BsiHKAI	GWGCWC	1 cut(s)	78
BsiHKCI	CYCGRG	1 cut(s)	71
BsiSI	CCGG	2 cut(s)	261, 273
BsmAI	GTCTC	2 cut(s)	310, 345
BsnI	GGCC	2 cut(s)	290, 338
BsoBI	CYCGRG	1 cut(s)	71
Bsp1286I	GDGCHC	2 cut(s)	78, 377
Bsp143I	GATC	3 cut(s)	183, 662, 733
BspACI	CCGC	5 cut(s)	151, 156, 192, 590, 593
BspANI	GGCC	2 cut(s)	290, 338
BspCNI	CTCAG	1 cut(s)	651
BspFNI	CGCG	2 cut(s)	153, 194
BspLI	GGNNCC	5 cut(s)	149, 169, 277, 534, 651
BspMI	ACCTGC	1 cut(s)	485
BspOI	GCTAGC	1 cut(s)	545
BspT107I	GGYRCC	3 cut(s)	275, 532, 649
BsrDI	GCAATG	1 cut(s)	534
BsrFI	RCCGGY	1 cut(s)	272
BsrI	ACTGG	6 cut(s)	142, 319, 377, 653, 744, 757
BssAI	RCCGGY	1 cut(s)	272
BssECI	CCNNGG	2 cut(s)	105, 163
BssMI	GATC	3 cut(s)	183, 662, 733
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	3 cut(s)	65, 107, 164
Bst4CI	ACNGT	2 cut(s)	179, 746
Bst6I	CTCTTC	2 cut(s)	341, 405
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	497
BstBAI	YACGTR	1 cut(s)	388
BstC8I	GCNNGC	2 cut(s)	280, 543
BstDEI	CTNAG	1 cut(s)	659
BstF5I	GGATG	1 cut(s)	699
BstFNI	CGCG	2 cut(s)	153, 194
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	3 cut(s)	186, 665, 736
BstMAI	GTCTC	2 cut(s)	310, 345
BstMBI	GATC	3 cut(s)	183, 662, 733
BstMWI	GCNNNNNNNGC	4 cut(s)	497, 590, 596, 605
BstNI	CCWGG	3 cut(s)	65, 107, 164
BstSCI	CCNGG	3 cut(s)	63, 105, 162
BstUI	CGCG	2 cut(s)	153, 194
BstV1I	GCAGC	5 cut(s)	294, 503, 557, 608, 647
BstV2I	GAAGAC	2 cut(s)	402, 450
BstXI	CCANNNNNNTGG	1 cut(s)	286
BsuRI	GGCC	2 cut(s)	290, 338
BtsCI	GGATG	1 cut(s)	699
BtsI	GCAGTG	1 cut(s)	536
BtsIMutI	CAGTG	4 cut(s)	149, 384, 525, 536
BveI	ACCTGC	1 cut(s)	485
Cac8I	GCNNGC	2 cut(s)	280, 543
CfoI	GCGC	1 cut(s)	155
Cfr10I	RCCGGY	1 cut(s)	272
Cfr13I	GGNCC	4 cut(s)	67, 229, 337, 742
CseI	GACGC	1 cut(s)	183
Csp6I	GTAC	3 cut(s)	40, 383, 533
CviAII	CATG	3 cut(s)	55, 241, 286
CviQI	GTAC	3 cut(s)	40, 383, 533
DdeI	CTNAG	1 cut(s)	659
DpnI	GATC	3 cut(s)	185, 664, 735
DpnII	GATC	3 cut(s)	183, 662, 733
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	2 cut(s)	341, 405
EarI	CTCTTC	2 cut(s)	341, 405
Eco24I	GRGCYC	1 cut(s)	377
Eco47I	GGWCC	3 cut(s)	67, 229, 742
Eco72I	CACGTG	1 cut(s)	388
Eco88I	CYCGRG	1 cut(s)	71
EcoO109I	RGGNCCY	1 cut(s)	229
EcoRII	CCWGG	3 cut(s)	63, 105, 162
EcoT38I	GRGCYC	1 cut(s)	377
FaeI	CATG	3 cut(s)	58, 244, 289
FaiI	YATR	9 cut(s)	56, 242, 287, 303, 329, 557, 567, 701, 707
FalI	AAGNNNNNCTT	4 cut(s)	407, 439, 455, 487
FatI	CATG	3 cut(s)	54, 240, 285
Fnu4HI	GCNGC	8 cut(s)	156, 283, 492, 546, 591, 594, 597, 636
FokI	GGATG	1 cut(s)	706
FriOI	GRGCYC	1 cut(s)	377
Fsp4HI	GCNGC	8 cut(s)	156, 283, 492, 546, 591, 594, 597, 636
FspBI	CTAG	3 cut(s)	266, 542, 753
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	8 cut(s)	156, 283, 492, 546, 591, 594, 597, 636
HaeIII	GGCC	2 cut(s)	290, 338
HapII	CCGG	2 cut(s)	261, 273
HgaI	GACGC	1 cut(s)	183
HhaI	GCGC	1 cut(s)	155
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	58, 244, 289
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HincII	GTYRAC	1 cut(s)	720
HindII	GTYRAC	1 cut(s)	720
HinfI	GANTC	1 cut(s)	20
HpaI	GTTAAC	1 cut(s)	720
HpaII	CCGG	2 cut(s)	261, 273
Hpy166II	GTNNAC	3 cut(s)	313, 385, 720
Hpy188I	TCNGA	3 cut(s)	183, 296, 660
Hpy8I	GTNNAC	3 cut(s)	313, 385, 720
Hpy99I	CGWCG	3 cut(s)	119, 179, 199
HpyAV	CCTTC	3 cut(s)	409, 457, 640
HpyCH4III	ACNGT	2 cut(s)	179, 746
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	1 cut(s)	500
HpyF10VI	GCNNNNNNNGC	4 cut(s)	497, 590, 596, 605
HpyF3I	CTNAG	1 cut(s)	659
HpySE526I	ACGT	1 cut(s)	387
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	58, 244, 289
HspAI	GCGC	1 cut(s)	153
KpnI	GGTACC	1 cut(s)	536
KspAI	GTTAAC	1 cut(s)	720
Kzo9I	GATC	3 cut(s)	183, 662, 733
LmnI	GCTCC	6 cut(s)	143, 153, 167, 524, 581, 632
Lsp1109I	GCAGC	5 cut(s)	294, 503, 557, 608, 647
LweI	GCATC	1 cut(s)	509
MaeI	CTAG	3 cut(s)	266, 542, 753
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	2 cut(s)	435, 483
MalI	GATC	3 cut(s)	185, 664, 735
MboI	GATC	3 cut(s)	183, 662, 733
MboII	GAAGA	4 cut(s)	358, 407, 422, 455
MhlI	GDGCHC	2 cut(s)	78, 377
MlsI	TGGCCA	1 cut(s)	290
MluNI	TGGCCA	1 cut(s)	290
MmeI	TCCRAC	2 cut(s)	303, 664
MnlI	CCTC	9 cut(s)	80, 104, 325, 397, 442, 445, 559, 567, 680
Mox20I	TGGCCA	1 cut(s)	290
MscI	TGGCCA	1 cut(s)	290
MseI	TTAA	4 cut(s)	200, 222, 234, 719
MslI	CAYNNNNRTG	1 cut(s)	332
Msp20I	TGGCCA	1 cut(s)	290
MspI	CCGG	2 cut(s)	261, 273
MspR9I	CCNGG	3 cut(s)	65, 107, 164
MvaI	CCWGG	3 cut(s)	65, 107, 164
MvnI	CGCG	2 cut(s)	153, 194
MwoI	GCNNNNNNNGC	4 cut(s)	497, 590, 596, 605
NdeII	GATC	3 cut(s)	183, 662, 733
NheI	GCTAGC	1 cut(s)	541
NlaIII	CATG	3 cut(s)	58, 244, 289
NlaIV	GGNNCC	5 cut(s)	149, 169, 277, 534, 651
PaeR7I	CTCGAG	1 cut(s)	71
PaqCI	CACCTGC	1 cut(s)	485
PcsI	WCGNNNNNNNCGW	2 cut(s)	120, 509
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	8 cut(s)	157, 284, 493, 547, 592, 595, 598, 637
PmaCI	CACGTG	1 cut(s)	388
PmlI	CACGTG	1 cut(s)	388
Ppu21I	YACGTR	1 cut(s)	388
PpuMI	RGGWCCY	1 cut(s)	229
Psp5II	RGGWCCY	1 cut(s)	229
Psp6I	CCWGG	3 cut(s)	63, 105, 162
PspCI	CACGTG	1 cut(s)	388
PspGI	CCWGG	3 cut(s)	63, 105, 162
PspN4I	GGNNCC	5 cut(s)	149, 169, 277, 534, 651
PspPI	GGNCC	4 cut(s)	67, 229, 337, 742
PspPPI	RGGWCCY	1 cut(s)	229
PspXI	VCTCGAGB	1 cut(s)	71
RsaI	GTAC	3 cut(s)	41, 384, 534
RsaNI	GTAC	3 cut(s)	40, 383, 533
RseI	CAYNNNNRTG	1 cut(s)	332
SaqAI	TTAA	4 cut(s)	200, 222, 234, 719
SatI	GCNGC	8 cut(s)	156, 283, 492, 546, 591, 594, 597, 636
Sau3AI	GATC	3 cut(s)	183, 662, 733
Sau96I	GGNCC	4 cut(s)	67, 229, 337, 742
ScrFI	CCNGG	3 cut(s)	65, 107, 164
SduI	GDGCHC	2 cut(s)	78, 377
SfaNI	GCATC	1 cut(s)	509
Sfr274I	CTCGAG	1 cut(s)	71
SinI	GGWCC	3 cut(s)	67, 229, 742
SlaI	CTCGAG	1 cut(s)	71
SmiMI	CAYNNNNRTG	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SpeI	ACTAGT	1 cut(s)	265
SsiI	CCGC	5 cut(s)	151, 156, 192, 590, 593
SspMI	CTAG	3 cut(s)	266, 542, 753
StyD4I	CCNGG	3 cut(s)	63, 105, 162
TaaI	ACNGT	2 cut(s)	179, 746
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	2 cut(s)	72, 123
TauI	GCSGC	3 cut(s)	158, 593, 596
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	4 cut(s)	200, 222, 234, 719
Tru9I	TTAA	4 cut(s)	200, 222, 234, 719
TscAI	CASTG	4 cut(s)	149, 384, 525, 543
TseI	GCWGC	5 cut(s)	282, 491, 545, 596, 635
TspDTI	ATGAA	2 cut(s)	359, 544
TspGWI	ACGGA	1 cut(s)	298
TspRI	CASTG	4 cut(s)	149, 384, 525, 543
VpaK11BI	GGWCC	3 cut(s)	67, 229, 742
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
XhoI	CTCGAG	1 cut(s)	71
XspI	CTAG	3 cut(s)	266, 542, 753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.