Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004934

Physical Location & Seq

Genomic Coordinates Forward (+)

31483932 .. 31484948

Gene Structure 1017 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013434

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCGCCAAATAGCCAAGCATCCGTAAATGGGGCCAAGTACCCTAACCCAACCATGAACACCCTCGACCTCGAGCACCAACCCACCCAAGACCTCAATACTTCCAAGGACAACGACGACTTCGACTACTCCAAACGCTCCCAGTGGCTCCGCGCTGCCGTCCTGGGAGCCAACGACGGTCTGATCTCCACCGCGTCGTTAATGATGGGTGTTGGTGCTGTTAAGCAGGACATTAAAGCCATGATACTAACCGGGTTCGCCGGACTAGTAGCCGGTGCCTGCAGCATGGCCATCGGAGAGTTTGTCTCCGTTTACTCCCAGTTGGACATAGAGGTGGCCCAAATGAAAAGAGACAACAACAACAACAAGCAAAACAGCCCGGTGGTACACGTGGTAGGAGACGAGGAGGGAGAAGAGAAGGAGAACTTGCCAAACCCGTTACAAGCGGCAGCTGCATCGGCTCTTGCGTTTTCAGCGGGAGCAATGGTACCACTGCTAGCAGCCTCGTTCATAAGGGAGTATAGGGCGAGGTTAGGAGCTGTGGCGGCGGCAGTGACATTGGCTTTGATGGTGTTTGGTTGGTTGGGAGCAGCTTTGGGGAAGGCACCAGTTCTGAGATCAACCATTAGGGTTTTGGTTGGAGGGTGGATGGCTATGGCTATAACCTTTGGGTTAACCAAGTTGATTGGATCCAGTGGACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0034220 GO:0034755 GO:0042221 GO:0042592 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071421 GO:0097577 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

235

Amino Acids

24.57

Weight (kDa)

5.7

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VIT1	PF01988	50 - 124	5.6e-24	VIT family
VIT1	PF01988	128 - 226	2e-18	VIT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21140 AT1G76800 AT3G43630 AT3G43660
fragaria_vesca	FvH4_2g13960 FvH4_2g13960
malus_domestica	MD05G1023100.v1.1 MD10G1024000.v1.1
prunus_persica	Prupe.8G027700_v2.0.a1
pyrus_communis	pycom05g01460 pycom10g01590
rosa_chinensis	RchiOBHm_Chr6g0275791
rosa_laevigata	RLG00000013431 RLG00000013434
rosa_multiflora	Rmu_sc0005406.1_g000003 Rmu_sc0007822.1_g000005
rosa_roxburghii	Rroxscaffold_7G00192860 Rroxscaffold_7G00192920
rosa_rugosa	Rorug06G0096200 Rorug06G0096200
rosa_samantha	Rh6AG208200 Rh6AG208400 Rh6BG210800 Rh6BG210900 Rh6BG212400 Rh6CG214400 Rh6CG214500 Rh6DG204200
rosa_wichuraiana	Rw6G018150 Rw6G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	487
AccB1I	GGYRCC	4 cut(s)	4, 275, 487, 604
AccII	CGCG	2 cut(s)	153, 194
AciI	CCGC	6 cut(s)	151, 192, 446, 476, 545, 548
AclWI	GGATC	2 cut(s)	684, 697
AcoI	YGGCCR	1 cut(s)	288
AcvI	CACGTG	1 cut(s)	391
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	41, 387, 489
AfiI	CCNNNNNNNGG	1 cut(s)	30
AflIII	ACRYGT	1 cut(s)	388
AhlI	ACTAGT	1 cut(s)	265
AjnI	CCWGG	1 cut(s)	162
AluBI	AGCT	3 cut(s)	452, 539, 593
AluI	AGCT	3 cut(s)	452, 539, 593
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	3 cut(s)	310, 345, 393
AlwI	GGATC	2 cut(s)	684, 697
Ama87I	CYCGRG	1 cut(s)	71
AoxI	GGCC	3 cut(s)	33, 288, 336
ApeKI	GCWGC	6 cut(s)	155, 282, 449, 452, 500, 590
ArsI	GACNNNNNNTTYG	2 cut(s)	547, 579
Asp718I	GGTACC	1 cut(s)	487
AspLEI	GCGC	2 cut(s)	7, 155
AspS9I	GGNCC	2 cut(s)	33, 337
AsuC2I	CCSGG	2 cut(s)	253, 380
AsuNHI	GCTAGC	1 cut(s)	496
AvaI	CYCGRG	1 cut(s)	71
BalI	TGGCCA	1 cut(s)	290
BamHI	GGATCC	1 cut(s)	689
BanI	GGYRCC	4 cut(s)	4, 275, 487, 604
BbrPI	CACGTG	1 cut(s)	391
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	6 cut(s)	142, 294, 439, 461, 512, 602
BccI	CCATC	4 cut(s)	199, 299, 562, 643
BceAI	ACGGC	1 cut(s)	143
BcgI	CGANNNNNNTGC	4 cut(s)	274, 308, 438, 472
BciT130I	CCWGG	1 cut(s)	164
BcnI	CCSGG	2 cut(s)	253, 380
BcoDI	GTCTC	3 cut(s)	310, 345, 393
BcuI	ACTAGT	1 cut(s)	265
BfaI	CTAG	3 cut(s)	266, 497, 703
BfmI	CTRYAG	1 cut(s)	280
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	9 cut(s)	156, 283, 447, 450, 453, 501, 546, 549, 591
BlsI	GCNGC	9 cut(s)	157, 284, 448, 451, 454, 502, 547, 550, 592
Bme1390I	CCNGG	3 cut(s)	164, 253, 380
BmeT110I	CYCGRG	1 cut(s)	71
BmgT120I	GGNCC	2 cut(s)	33, 337
BmiI	GGNNCC	8 cut(s)	6, 34, 149, 169, 277, 489, 606, 691
BmrFI	CCNGG	3 cut(s)	164, 253, 380
BmrI	ACTGGG	2 cut(s)	136, 313
BmsI	GCATC	2 cut(s)	29, 464
BmtI	GCTAGC	1 cut(s)	500
BmuI	ACTGGG	2 cut(s)	136, 313
BplI	GAGNNNNNCTC	2 cut(s)	290, 322
BpuMI	CCSGG	2 cut(s)	253, 380
BsaAI	YACGTR	1 cut(s)	391
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	105, 163
BsaXI	ACNNNNNCTCC	4 cut(s)	288, 318, 471, 501
Bsc4I	CCNNNNNNNGG	1 cut(s)	30
Bse118I	RCCGGY	1 cut(s)	272
Bse1I	ACTGG	4 cut(s)	142, 319, 608, 693
Bse3DI	GCAATG	1 cut(s)	489
BseBI	CCWGG	1 cut(s)	164
BseDI	CCNNGG	2 cut(s)	105, 163
BseGI	GGATG	2 cut(s)	20, 654
BseLI	CCNNNNNNNGG	1 cut(s)	30
BseMI	GCAATG	1 cut(s)	489
BseMII	CTCAG	1 cut(s)	605
BseNI	ACTGG	4 cut(s)	142, 319, 608, 693
BseRI	GAGGAG	1 cut(s)	419
BseXI	GCAGC	6 cut(s)	142, 294, 439, 461, 512, 602
Bsh1236I	CGCG	2 cut(s)	153, 194
BshFI	GGCC	3 cut(s)	35, 290, 338
BshNI	GGYRCC	4 cut(s)	4, 275, 487, 604
BsiHKAI	GWGCWC	1 cut(s)	78
BsiHKCI	CYCGRG	1 cut(s)	71
BsiSI	CCGG	4 cut(s)	252, 261, 273, 380
BslI	CCNNNNNNNGG	1 cut(s)	30
BsmAI	GTCTC	3 cut(s)	310, 345, 393
BsmBI	CGTCTC	1 cut(s)	393
BsnI	GGCC	3 cut(s)	35, 290, 338
BsoBI	CYCGRG	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	3 cut(s)	183, 617, 689
BspACI	CCGC	6 cut(s)	151, 192, 446, 476, 545, 548
BspANI	GGCC	3 cut(s)	35, 290, 338
BspCNI	CTCAG	1 cut(s)	606
BspFNI	CGCG	2 cut(s)	153, 194
BspLI	GGNNCC	8 cut(s)	6, 34, 149, 169, 277, 489, 606, 691
BspMAI	CTGCAG	1 cut(s)	284
BspOI	GCTAGC	1 cut(s)	500
BspPI	GGATC	2 cut(s)	684, 697
BspT107I	GGYRCC	4 cut(s)	4, 275, 487, 604
BsrDI	GCAATG	1 cut(s)	489
BsrFI	RCCGGY	1 cut(s)	272
BsrI	ACTGG	4 cut(s)	142, 319, 608, 693
BssAI	RCCGGY	1 cut(s)	272
BssECI	CCNNGG	2 cut(s)	105, 163
BssMI	GATC	3 cut(s)	183, 617, 689
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	164
Bst4CI	ACNGT	1 cut(s)	179
Bst6I	CTCTTC	1 cut(s)	408
BstACI	GRCGYC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	391
BstC8I	GCNNGC	2 cut(s)	280, 498
BstDEI	CTNAG	1 cut(s)	614
BstF5I	GGATG	2 cut(s)	20, 654
BstFNI	CGCG	2 cut(s)	153, 194
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 155
BstKTI	GATC	3 cut(s)	186, 620, 692
BstMAI	GTCTC	3 cut(s)	310, 345, 393
BstMBI	GATC	3 cut(s)	183, 617, 689
BstMWI	GCNNNNNNNGC	4 cut(s)	452, 458, 473, 545
BstNI	CCWGG	1 cut(s)	164
BstSCI	CCNGG	3 cut(s)	162, 251, 378
BstSFI	CTRYAG	1 cut(s)	280
BstUI	CGCG	2 cut(s)	153, 194
BstV1I	GCAGC	6 cut(s)	142, 294, 439, 461, 512, 602
BstX2I	RGATCY	1 cut(s)	689
BstYI	RGATCY	1 cut(s)	689
BsuRI	GGCC	3 cut(s)	35, 290, 338
BtsCI	GGATG	2 cut(s)	20, 654
BtsI	GCAGTG	2 cut(s)	491, 558
BtsIMutI	CAGTG	4 cut(s)	149, 491, 558, 700
Cac8I	GCNNGC	2 cut(s)	280, 498
CfoI	GCGC	2 cut(s)	7, 155
Cfr10I	RCCGGY	1 cut(s)	272
Cfr13I	GGNCC	2 cut(s)	33, 337
CseI	GACGC	1 cut(s)	183
Csp6I	GTAC	3 cut(s)	40, 386, 488
CviAII	CATG	3 cut(s)	55, 241, 286
CviQI	GTAC	3 cut(s)	40, 386, 488
DdeI	CTNAG	1 cut(s)	614
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	3 cut(s)	185, 619, 691
DpnII	GATC	3 cut(s)	183, 617, 689
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
Eco130I	CCWWGG	1 cut(s)	105
Eco72I	CACGTG	1 cut(s)	391
Eco88I	CYCGRG	1 cut(s)	71
EcoRII	CCWGG	1 cut(s)	162
EcoT14I	CCWWGG	1 cut(s)	105
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	105
Esp3I	CGTCTC	1 cut(s)	393
FaeI	CATG	3 cut(s)	58, 244, 289
FaiI	YATR	8 cut(s)	56, 242, 287, 329, 512, 522, 656, 662
FalI	AAGNNNNNCTT	2 cut(s)	410, 442
FatI	CATG	3 cut(s)	54, 240, 285
FauI	CCCGC	1 cut(s)	469
Fnu4HI	GCNGC	9 cut(s)	156, 283, 447, 450, 453, 501, 546, 549, 591
FokI	GGATG	2 cut(s)	7, 661
Fsp4HI	GCNGC	9 cut(s)	156, 283, 447, 450, 453, 501, 546, 549, 591
FspBI	CTAG	3 cut(s)	266, 497, 703
GlaI	GCGC	2 cut(s)	6, 154
GluI	GCNGC	9 cut(s)	156, 283, 447, 450, 453, 501, 546, 549, 591
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	3 cut(s)	35, 290, 338
HapII	CCGG	4 cut(s)	252, 261, 273, 380
HgaI	GACGC	1 cut(s)	183
HhaI	GCGC	2 cut(s)	7, 155
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	58, 244, 289
Hin6I	GCGC	2 cut(s)	5, 153
HinP1I	GCGC	2 cut(s)	5, 153
HincII	GTYRAC	1 cut(s)	675
HindII	GTYRAC	1 cut(s)	675
HinfI	GANTC	1 cut(s)	699
HpaI	GTTAAC	1 cut(s)	675
HpaII	CCGG	4 cut(s)	252, 261, 273, 380
Hpy166II	GTNNAC	4 cut(s)	313, 388, 675, 698
Hpy188I	TCNGA	3 cut(s)	183, 296, 615
Hpy8I	GTNNAC	4 cut(s)	313, 388, 675, 698
Hpy99I	CGWCG	3 cut(s)	119, 179, 199
HpyAV	CCTTC	2 cut(s)	412, 595
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4IV	ACGT	1 cut(s)	390
HpyCH4V	TGCA	2 cut(s)	282, 455
HpyF10VI	GCNNNNNNNGC	4 cut(s)	452, 458, 473, 545
HpyF3I	CTNAG	1 cut(s)	614
HpySE526I	ACGT	1 cut(s)	390
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	58, 244, 289
HspAI	GCGC	2 cut(s)	5, 153
KasI	GGCGCC	1 cut(s)	4
KpnI	GGTACC	1 cut(s)	491
KspAI	GTTAAC	1 cut(s)	675
Kzo9I	GATC	3 cut(s)	183, 617, 689
LmnI	GCTCC	6 cut(s)	143, 153, 167, 479, 536, 587
Lsp1109I	GCAGC	6 cut(s)	142, 294, 439, 461, 512, 602
LweI	GCATC	2 cut(s)	29, 464
MaeI	CTAG	3 cut(s)	266, 497, 703
MaeII	ACGT	1 cut(s)	390
MaeIII	GTNAC	2 cut(s)	438, 553
MalI	GATC	3 cut(s)	185, 619, 691
MboI	GATC	3 cut(s)	183, 617, 689
MboII	GAAGA	1 cut(s)	425
MflI	RGATCY	1 cut(s)	689
MhlI	GDGCHC	1 cut(s)	78
MlsI	TGGCCA	1 cut(s)	290
MluNI	TGGCCA	1 cut(s)	290
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	693
MmeI	TCCRAC	2 cut(s)	303, 619
MnlI	CCTC	9 cut(s)	74, 80, 104, 325, 397, 400, 514, 522, 635
Mox20I	TGGCCA	1 cut(s)	290
MscI	TGGCCA	1 cut(s)	290
MseI	TTAA	4 cut(s)	200, 222, 234, 674
MslI	CAYNNNNRTG	1 cut(s)	332
Msp20I	TGGCCA	1 cut(s)	290
MspA1I	CMGCKG	2 cut(s)	452, 476
MspI	CCGG	4 cut(s)	252, 261, 273, 380
MspR9I	CCNGG	3 cut(s)	164, 253, 380
MvaI	CCWGG	1 cut(s)	164
MvnI	CGCG	2 cut(s)	153, 194
MwoI	GCNNNNNNNGC	4 cut(s)	452, 458, 473, 545
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	2 cut(s)	253, 380
NdeII	GATC	3 cut(s)	183, 617, 689
NheI	GCTAGC	1 cut(s)	496
NlaIII	CATG	3 cut(s)	58, 244, 289
NlaIV	GGNNCC	8 cut(s)	6, 34, 149, 169, 277, 489, 606, 691
NmuCI	GTSAC	1 cut(s)	553
PaeR7I	CTCGAG	1 cut(s)	71
PcsI	WCGNNNNNNNCGW	2 cut(s)	120, 464
PkrI	GCNGC	9 cut(s)	157, 284, 448, 451, 454, 502, 547, 550, 592
PleI	GAGTC	1 cut(s)	693
PluTI	GGCGCC	1 cut(s)	8
PmaCI	CACGTG	1 cut(s)	391
PmlI	CACGTG	1 cut(s)	391
PpsI	GAGTC	1 cut(s)	693
Ppu21I	YACGTR	1 cut(s)	391
Psp6I	CCWGG	1 cut(s)	162
PspCI	CACGTG	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	162
PspN4I	GGNNCC	8 cut(s)	6, 34, 149, 169, 277, 489, 606, 691
PspPI	GGNCC	2 cut(s)	33, 337
PspXI	VCTCGAGB	1 cut(s)	71
PstI	CTGCAG	1 cut(s)	284
PsuI	RGATCY	1 cut(s)	689
PvuII	CAGCTG	1 cut(s)	452
RsaI	GTAC	3 cut(s)	41, 387, 489
RsaNI	GTAC	3 cut(s)	40, 386, 488
RseI	CAYNNNNRTG	1 cut(s)	332
SaqAI	TTAA	4 cut(s)	200, 222, 234, 674
SatI	GCNGC	9 cut(s)	156, 283, 447, 450, 453, 501, 546, 549, 591
Sau3AI	GATC	3 cut(s)	183, 617, 689
Sau96I	GGNCC	2 cut(s)	33, 337
SchI	GAGTC	1 cut(s)	693
ScrFI	CCNGG	3 cut(s)	164, 253, 380
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	9 cut(s)	72, 96, 336, 393, 454, 533, 541, 595, 668
SfaNI	GCATC	2 cut(s)	29, 464
SfcI	CTRYAG	1 cut(s)	280
SfoI	GGCGCC	1 cut(s)	6
Sfr274I	CTCGAG	1 cut(s)	71
SlaI	CTCGAG	1 cut(s)	71
SmiMI	CAYNNNNRTG	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SpeI	ACTAGT	1 cut(s)	265
SsiI	CCGC	6 cut(s)	151, 192, 446, 476, 545, 548
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	3 cut(s)	266, 497, 703
StyD4I	CCNGG	3 cut(s)	162, 251, 378
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	179
TaiI	ACGT	1 cut(s)	393
TaqI	TCGA	3 cut(s)	66, 72, 123
TauI	GCSGC	3 cut(s)	449, 548, 551
Tru1I	TTAA	4 cut(s)	200, 222, 234, 674
Tru9I	TTAA	4 cut(s)	200, 222, 234, 674
TscAI	CASTG	4 cut(s)	149, 498, 558, 700
TseFI	GTSAC	1 cut(s)	553
TseI	GCWGC	6 cut(s)	155, 282, 449, 452, 500, 590
Tsp45I	GTSAC	1 cut(s)	553
TspDTI	ATGAA	3 cut(s)	71, 359, 499
TspGWI	ACGGA	2 cut(s)	13, 298
TspRI	CASTG	4 cut(s)	149, 498, 558, 700
XcmI	CCANNNNNNNNNTGG	1 cut(s)	631
XhoI	CTCGAG	1 cut(s)	71
XspI	CTAG	3 cut(s)	266, 497, 703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.