RLG00000013431

Vacuolar iron transporter homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0004934
Physical Location & Seq
Forward (+)
31436568 .. 31437326
759 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013431

Sequence Viewer

Length: 759 bp
ATGGCGCCAAATAGCCAAGAATCCGTAAATGGGGGCCAGTACCCTAACCCAACCATGACCAACCTGGACCTCGAGCACCAATCCACCCAAGACCTCAATACTTCCCAGGACAACGACGACTTCGACTACTCCAAACGCTCCCAGTGGCTCCGTGCCGCCGTCCTGGGAGCCAACGACGGTCTGATCTCCACCGCATCATTAATGATGGGTGTTGGTGCTGTTAAGCAGGACATTAAAGCCATGATACTAACCGGGTTTGCCGGACTAGTAGCCGGTGCCTGCAGCATGGCCATCGGAGAGTTTGTCTCCGTGTACTCCCAGTTGGACATAGAGGTGGCCCAAATGAAGAGAGACAACAATAAGAAGCAAAAGAGCCCGGTGGTACACGTGATAGAAGACGAGGAGGGAGAAGAGAAGGACAACTTGCCAAACCTGCCAAACCCGTTACGAGCAGACGAGGAGGGAGAAGACAAGGAGAACTTGCCAAACCCGTTACAAGCAGCAGGTGCATCGGCTCTTGCGTTTTCAGTGGGAGCAATGGTACCACTGCTAGCAGCCTCGTTCATAAGGGAGTATAGGGTGAGGTTGGGAGCTGTGGCGGCGGCAGTGACATTGGCTTTGACGGTGTTTGGGTGGTTGGGAGCAGCTTTGGGGAAGGCACCAGTTCTGAGATCAACGATTAGGGTTTTGGTTGGAGGGTGGATGGCCATGGCTATAACCTTTGGGTTAACCAAGTTGATTGGATCTACTGGACTGTAA

Protein Analysis

253

Amino Acids

26.75

Weight (kDa)

4.83

Isoelectric Point (pI)

46.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VIT1 PF01988 50 - 244 5.7e-42 VIT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 494
Acc36I ACCTGC 2 cut(s) 441, 494
Acc65I GGTACC 1 cut(s) 541
AccB1I GGYRCC 4 cut(s) 4, 275, 541, 658
AciI CCGC 4 cut(s) 156, 192, 599, 602
AclWI GGATC 1 cut(s) 751
AcoI YGGCCR 2 cut(s) 288, 705
AcvI CACGTG 1 cut(s) 388
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 4 cut(s) 41, 314, 384, 543
AfiI CCNNNNNNNGG 1 cut(s) 30
AflIII ACRYGT 1 cut(s) 385
AhlI ACTAGT 1 cut(s) 265
AjnI CCWGG 3 cut(s) 63, 105, 162
AluBI AGCT 2 cut(s) 593, 647
AluI AGCT 2 cut(s) 593, 647
Alw21I GWGCWC 1 cut(s) 78
Alw26I GTCTC 2 cut(s) 310, 345
AlwI GGATC 1 cut(s) 751
Ama87I CYCGRG 1 cut(s) 71
AoxI GGCC 4 cut(s) 34, 288, 336, 705
ApeKI GCWGC 4 cut(s) 282, 500, 554, 644
ArsI GACNNNNNNTTYG 2 cut(s) 601, 633
AseI ATTAAT 1 cut(s) 200
Asp718I GGTACC 1 cut(s) 541
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 3 cut(s) 34, 67, 337
AsuC2I CCSGG 2 cut(s) 253, 377
AsuHPI GGTGA 1 cut(s) 592
AsuNHI GCTAGC 1 cut(s) 550
AvaI CYCGRG 1 cut(s) 71
AvaII GGWCC 1 cut(s) 67
BalI TGGCCA 2 cut(s) 290, 707
BanI GGYRCC 4 cut(s) 4, 275, 541, 658
BanII GRGCYC 1 cut(s) 377
BbrPI CACGTG 1 cut(s) 388
BbsI GAAGAC 2 cut(s) 402, 474
Bbv12I GWGCWC 1 cut(s) 78
BbvI GCAGC 4 cut(s) 294, 512, 566, 656
BccI CCATC 3 cut(s) 199, 299, 697
BceAI ACGGC 1 cut(s) 143
BcgI CGANNNNNNTGC 4 cut(s) 274, 308, 492, 526
BciT130I CCWGG 3 cut(s) 65, 107, 164
BcnI CCSGG 2 cut(s) 253, 377
BcoDI GTCTC 2 cut(s) 310, 345
BcuI ACTAGT 1 cut(s) 265
BfaI CTAG 2 cut(s) 266, 551
BfmI CTRYAG 1 cut(s) 280
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 2 cut(s) 441, 494
BisI GCNGC 7 cut(s) 156, 283, 501, 555, 600, 603, 645
BlsI GCNGC 7 cut(s) 157, 284, 502, 556, 601, 604, 646
Bme1390I CCNGG 5 cut(s) 65, 107, 164, 253, 377
Bme18I GGWCC 1 cut(s) 67
BmeT110I CYCGRG 1 cut(s) 71
BmgT120I GGNCC 3 cut(s) 34, 67, 337
BmiI GGNNCC 7 cut(s) 6, 35, 149, 169, 277, 543, 660
BmrFI CCNGG 5 cut(s) 65, 107, 164, 253, 377
BmrI ACTGGG 2 cut(s) 136, 313
BmsI GCATC 2 cut(s) 203, 518
BmtI GCTAGC 1 cut(s) 554
BmuI ACTGGG 2 cut(s) 136, 313
BpiI GAAGAC 2 cut(s) 402, 474
BplI GAGNNNNNCTC 2 cut(s) 290, 322
BpuMI CCSGG 2 cut(s) 253, 377
BsaAI YACGTR 1 cut(s) 388
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 3 cut(s) 105, 163, 708
BsaXI ACNNNNNCTCC 4 cut(s) 288, 318, 525, 555
Bsc4I CCNNNNNNNGG 1 cut(s) 30
Bse118I RCCGGY 1 cut(s) 272
Bse1I ACTGG 5 cut(s) 37, 142, 319, 662, 754
Bse3DI GCAATG 1 cut(s) 543
BseBI CCWGG 3 cut(s) 65, 107, 164
BseDI CCNNGG 3 cut(s) 105, 163, 708
BseGI GGATG 1 cut(s) 708
BseLI CCNNNNNNNGG 1 cut(s) 30
BseMI GCAATG 1 cut(s) 543
BseMII CTCAG 1 cut(s) 659
BseNI ACTGG 5 cut(s) 37, 142, 319, 662, 754
BseRI GAGGAG 2 cut(s) 416, 473
BseXI GCAGC 4 cut(s) 294, 512, 566, 656
BshFI GGCC 4 cut(s) 36, 290, 338, 707
BshNI GGYRCC 4 cut(s) 4, 275, 541, 658
BsiHKAI GWGCWC 1 cut(s) 78
BsiHKCI CYCGRG 1 cut(s) 71
BsiSI CCGG 4 cut(s) 252, 261, 273, 377
BslI CCNNNNNNNGG 1 cut(s) 30
BsmAI GTCTC 2 cut(s) 310, 345
BsnI GGCC 4 cut(s) 36, 290, 338, 707
BsoBI CYCGRG 1 cut(s) 71
Bsp1286I GDGCHC 2 cut(s) 78, 377
Bsp143I GATC 3 cut(s) 183, 671, 743
Bsp19I CCATGG 1 cut(s) 708
BspACI CCGC 4 cut(s) 156, 192, 599, 602
BspANI GGCC 4 cut(s) 36, 290, 338, 707
BspCNI CTCAG 1 cut(s) 660
BspLI GGNNCC 7 cut(s) 6, 35, 149, 169, 277, 543, 660
BspMAI CTGCAG 1 cut(s) 284
BspMI ACCTGC 2 cut(s) 441, 494
BspOI GCTAGC 1 cut(s) 554
BspPI GGATC 1 cut(s) 751
BspT107I GGYRCC 4 cut(s) 4, 275, 541, 658
BsrDI GCAATG 1 cut(s) 543
BsrFI RCCGGY 1 cut(s) 272
BsrI ACTGG 5 cut(s) 37, 142, 319, 662, 754
BssAI RCCGGY 1 cut(s) 272
BssECI CCNNGG 3 cut(s) 105, 163, 708
BssMI GATC 3 cut(s) 183, 671, 743
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 708
Bst2UI CCWGG 3 cut(s) 65, 107, 164
Bst4CI ACNGT 3 cut(s) 179, 625, 756
Bst6I CTCTTC 2 cut(s) 341, 405
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 506
BstBAI YACGTR 1 cut(s) 388
BstC8I GCNNGC 2 cut(s) 280, 552
BstDEI CTNAG 1 cut(s) 668
BstDSI CCRYGG 1 cut(s) 708
BstF5I GGATG 1 cut(s) 708
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 3 cut(s) 186, 674, 746
BstMAI GTCTC 2 cut(s) 310, 345
BstMBI GATC 3 cut(s) 183, 671, 743
BstMWI GCNNNNNNNGC 3 cut(s) 433, 506, 599
BstNI CCWGG 3 cut(s) 65, 107, 164
BstSCI CCNGG 5 cut(s) 63, 105, 162, 251, 375
BstSFI CTRYAG 1 cut(s) 280
BstV1I GCAGC 4 cut(s) 294, 512, 566, 656
BstV2I GAAGAC 2 cut(s) 402, 474
BstX2I RGATCY 1 cut(s) 743
BstYI RGATCY 1 cut(s) 743
BsuRI GGCC 4 cut(s) 36, 290, 338, 707
BtgI CCRYGG 1 cut(s) 708
BtsCI GGATG 1 cut(s) 708
BtsI GCAGTG 2 cut(s) 545, 612
BtsIMutI CAGTG 4 cut(s) 149, 534, 545, 612
BveI ACCTGC 2 cut(s) 441, 494
Cac8I GCNNGC 2 cut(s) 280, 552
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 272
Cfr13I GGNCC 3 cut(s) 34, 67, 337
Csp6I GTAC 4 cut(s) 40, 313, 383, 542
CviAII CATG 4 cut(s) 55, 241, 286, 709
CviQI GTAC 4 cut(s) 40, 313, 383, 542
DdeI CTNAG 1 cut(s) 668
DinI GGCGCC 1 cut(s) 6
DpnI GATC 3 cut(s) 185, 673, 745
DpnII GATC 3 cut(s) 183, 671, 743
EaeI YGGCCR 2 cut(s) 288, 705
Eam1104I CTCTTC 2 cut(s) 341, 405
EarI CTCTTC 2 cut(s) 341, 405
Eco130I CCWWGG 1 cut(s) 708
Eco24I GRGCYC 1 cut(s) 377
Eco47I GGWCC 1 cut(s) 67
Eco72I CACGTG 1 cut(s) 388
Eco88I CYCGRG 1 cut(s) 71
EcoRII CCWGG 3 cut(s) 63, 105, 162
EcoT14I CCWWGG 1 cut(s) 708
EcoT38I GRGCYC 1 cut(s) 377
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 708
FaeI CATG 4 cut(s) 58, 244, 289, 712
FaiI YATR 8 cut(s) 56, 242, 287, 329, 566, 576, 710, 716
FalI AAGNNNNNCTT 4 cut(s) 407, 439, 464, 496
FatI CATG 4 cut(s) 54, 240, 285, 708
Fnu4HI GCNGC 7 cut(s) 156, 283, 501, 555, 600, 603, 645
FokI GGATG 1 cut(s) 715
FriOI GRGCYC 1 cut(s) 377
Fsp4HI GCNGC 7 cut(s) 156, 283, 501, 555, 600, 603, 645
FspBI CTAG 2 cut(s) 266, 551
GlaI GCGC 1 cut(s) 6
GluI GCNGC 7 cut(s) 156, 283, 501, 555, 600, 603, 645
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 4 cut(s) 36, 290, 338, 707
HapII CCGG 4 cut(s) 252, 261, 273, 377
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 58, 244, 289, 712
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 729
HindII GTYRAC 1 cut(s) 729
HinfI GANTC 1 cut(s) 20
HpaI GTTAAC 1 cut(s) 729
HpaII CCGG 4 cut(s) 252, 261, 273, 377
HphI GGTGA 1 cut(s) 592
Hpy166II GTNNAC 3 cut(s) 313, 385, 729
Hpy188I TCNGA 3 cut(s) 183, 296, 669
Hpy8I GTNNAC 3 cut(s) 313, 385, 729
Hpy99I CGWCG 2 cut(s) 119, 179
HpyAV CCTTC 2 cut(s) 409, 649
HpyCH4III ACNGT 3 cut(s) 179, 625, 756
HpyCH4IV ACGT 1 cut(s) 387
HpyCH4V TGCA 2 cut(s) 282, 509
HpyF10VI GCNNNNNNNGC 3 cut(s) 433, 506, 599
HpyF3I CTNAG 1 cut(s) 668
HpySE526I ACGT 1 cut(s) 387
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 58, 244, 289, 712
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
KpnI GGTACC 1 cut(s) 545
KspAI GTTAAC 1 cut(s) 729
Kzo9I GATC 3 cut(s) 183, 671, 743
LmnI GCTCC 6 cut(s) 143, 153, 167, 533, 590, 641
Lsp1109I GCAGC 4 cut(s) 294, 512, 566, 656
LweI GCATC 2 cut(s) 203, 518
MaeI CTAG 2 cut(s) 266, 551
MaeII ACGT 1 cut(s) 387
MaeIII GTNAC 3 cut(s) 444, 492, 607
MalI GATC 3 cut(s) 185, 673, 745
MboI GATC 3 cut(s) 183, 671, 743
MboII GAAGA 4 cut(s) 358, 407, 422, 479
MflI RGATCY 1 cut(s) 743
MhlI GDGCHC 2 cut(s) 78, 377
MlsI TGGCCA 2 cut(s) 290, 707
MluNI TGGCCA 2 cut(s) 290, 707
Mly113I GGCGCC 1 cut(s) 5
MmeI TCCRAC 2 cut(s) 303, 673
Mox20I TGGCCA 2 cut(s) 290, 707
MscI TGGCCA 2 cut(s) 290, 707
MseI TTAA 4 cut(s) 200, 222, 234, 728
MslI CAYNNNNRTG 1 cut(s) 332
Msp20I TGGCCA 2 cut(s) 290, 707
MspI CCGG 4 cut(s) 252, 261, 273, 377
MspR9I CCNGG 5 cut(s) 65, 107, 164, 253, 377
MvaI CCWGG 3 cut(s) 65, 107, 164
MwoI GCNNNNNNNGC 3 cut(s) 433, 506, 599
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 2 cut(s) 253, 377
NcoI CCATGG 1 cut(s) 708
NdeII GATC 3 cut(s) 183, 671, 743
NheI GCTAGC 1 cut(s) 550
NlaIII CATG 4 cut(s) 58, 244, 289, 712
NlaIV GGNNCC 7 cut(s) 6, 35, 149, 169, 277, 543, 660
NmuCI GTSAC 1 cut(s) 607
PaeR7I CTCGAG 1 cut(s) 71
PaqCI CACCTGC 1 cut(s) 494
PcsI WCGNNNNNNNCGW 2 cut(s) 120, 518
PfeI GAWTC 1 cut(s) 20
PkrI GCNGC 7 cut(s) 157, 284, 502, 556, 601, 604, 646
PluTI GGCGCC 1 cut(s) 8
PmaCI CACGTG 1 cut(s) 388
PmlI CACGTG 1 cut(s) 388
Ppu21I YACGTR 1 cut(s) 388
PshBI ATTAAT 1 cut(s) 200
Psp6I CCWGG 3 cut(s) 63, 105, 162
PspCI CACGTG 1 cut(s) 388
PspGI CCWGG 3 cut(s) 63, 105, 162
PspN4I GGNNCC 7 cut(s) 6, 35, 149, 169, 277, 543, 660
PspPI GGNCC 3 cut(s) 34, 67, 337
PspXI VCTCGAGB 1 cut(s) 71
PstI CTGCAG 1 cut(s) 284
PsuI RGATCY 1 cut(s) 743
RsaI GTAC 4 cut(s) 41, 314, 384, 543
RsaNI GTAC 4 cut(s) 40, 313, 383, 542
RseI CAYNNNNRTG 1 cut(s) 332
SaqAI TTAA 4 cut(s) 200, 222, 234, 728
SatI GCNGC 7 cut(s) 156, 283, 501, 555, 600, 603, 645
Sau3AI GATC 3 cut(s) 183, 671, 743
Sau96I GGNCC 3 cut(s) 34, 67, 337
ScrFI CCNGG 5 cut(s) 65, 107, 164, 253, 377
SduI GDGCHC 2 cut(s) 78, 377
SfaNI GCATC 2 cut(s) 203, 518
SfcI CTRYAG 1 cut(s) 280
SfoI GGCGCC 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 71
SinI GGWCC 1 cut(s) 67
SlaI CTCGAG 1 cut(s) 71
SmiMI CAYNNNNRTG 1 cut(s) 332
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
SpeI ACTAGT 1 cut(s) 265
SsiI CCGC 4 cut(s) 156, 192, 599, 602
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 2 cut(s) 266, 551
StyD4I CCNGG 5 cut(s) 63, 105, 162, 251, 375
StyI CCWWGG 1 cut(s) 708
TaaI ACNGT 3 cut(s) 179, 625, 756
TaiI ACGT 1 cut(s) 390
TaqI TCGA 2 cut(s) 72, 123
TatI WGTACW 1 cut(s) 312
TauI GCSGC 3 cut(s) 158, 602, 605
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 4 cut(s) 200, 222, 234, 728
Tru9I TTAA 4 cut(s) 200, 222, 234, 728
TscAI CASTG 4 cut(s) 149, 534, 552, 612
TseFI GTSAC 1 cut(s) 607
TseI GCWGC 4 cut(s) 282, 500, 554, 644
Tsp45I GTSAC 1 cut(s) 607
TspDTI ATGAA 2 cut(s) 359, 553
TspGWI ACGGA 3 cut(s) 13, 140, 298
TspRI CASTG 4 cut(s) 149, 534, 552, 612
VpaK11BI GGWCC 1 cut(s) 67
VspI ATTAAT 1 cut(s) 200
XcmI CCANNNNNNNNNTGG 1 cut(s) 61
XhoI CTCGAG 1 cut(s) 71
XspI CTAG 2 cut(s) 266, 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.