Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004934

Physical Location & Seq

Genomic Coordinates Reverse (-)

12274546 .. 12277672

Gene Structure 3127 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g13960.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGACCAACCTCGACCTCGAGCACCAACCCACCCAAGATATCGACAACGACGACTTCGACTACTCCAAACGCTCCCAATGGCTCCGCGCCGCCGTCCTGGGAGCTAACGACGGGCTGATCTCCACCGCGTCCCTAATGATGGGTGTTGGTGCTGTTAAACAGGACATTAAGGCCATGATACTAACCGGGTTCGCCGGACTAGTAGCCGGTGCCTGCAGCATGGCCATCGGAGAGTTTGTCTCCGTTTACTCCCAGTTGGACATAGAGGTGGCCCAAATGAAGAGAGACAACATGAACAAGCAAAACAGCCCGGTGGCCGGAGGAGACGAGGAGGAAGAAGAGAAGGAGAACTTACCAAACCCGTTACAAGCAGCAGCTGCATCGGCTCTTGCCTTTTCAGTGGGAGCAATGGTACCACTGTTAGCAGCCTCGTTCATAAGGGAGTATAGGGCCAGGTTAGGAGCTGTGGCGGCGGCGGTGACATTGGCTCTGTTGGTGTTTGGGTGGTTGGGAGCAGCTTTGGGGAAGGCACCAGTTATCAGATCTACTGTTAGGGTTTTGGTTGGAGGGTGGTTGGCCATGGCTATAACCTTTGGGTTAACAAAGTTGATTGGATCTAGTGGACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0034220 GO:0034755 GO:0042221 GO:0042592 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071421 GO:0097577 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

210

Amino Acids

21.96

Weight (kDa)

4.89

Isoelectric Point (pI)

43.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VIT1	PF01988	28 - 112	8.6e-26	VIT family
VIT1	PF01988	115 - 201	7.2e-17	VIT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21140 AT1G76800 AT3G43630 AT3G43660
fragaria_vesca	FvH4_2g13960 FvH4_2g13960
malus_domestica	MD05G1023100.v1.1 MD10G1024000.v1.1
prunus_persica	Prupe.8G027700_v2.0.a1
pyrus_communis	pycom05g01460 pycom10g01590
rosa_chinensis	RchiOBHm_Chr6g0275791
rosa_laevigata	RLG00000013431 RLG00000013434
rosa_multiflora	Rmu_sc0005406.1_g000003 Rmu_sc0007822.1_g000005
rosa_roxburghii	Rroxscaffold_7G00192860 Rroxscaffold_7G00192920
rosa_rugosa	Rorug06G0096200 Rorug06G0096200
rosa_samantha	Rh6AG208200 Rh6AG208400 Rh6BG210800 Rh6BG210900 Rh6BG212400 Rh6CG214400 Rh6CG214500 Rh6DG204200
rosa_wichuraiana	Rw6G018150 Rw6G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	412
AccB1I	GGYRCC	3 cut(s)	209, 412, 529
AccII	CGCG	2 cut(s)	87, 128
AciI	CCGC	6 cut(s)	85, 90, 126, 470, 473, 476
AclWI	GGATC	1 cut(s)	622
AcoI	YGGCCR	3 cut(s)	222, 315, 576
AfaI	GTAC	1 cut(s)	414
AfiI	CCNNNNNNNGG	2 cut(s)	139, 317
AhlI	ACTAGT	1 cut(s)	199
AjnI	CCWGG	2 cut(s)	96, 452
AluBI	AGCT	4 cut(s)	104, 377, 464, 518
AluI	AGCT	4 cut(s)	104, 377, 464, 518
Alw21I	GWGCWC	1 cut(s)	24
Alw26I	GTCTC	3 cut(s)	244, 279, 318
AlwI	GGATC	1 cut(s)	622
AlwNI	CAGNNNCTG	1 cut(s)	377
Ama87I	CYCGRG	1 cut(s)	17
AoxI	GGCC	6 cut(s)	171, 222, 270, 315, 450, 576
ApeKI	GCWGC	6 cut(s)	216, 371, 374, 377, 425, 515
Asp718I	GGTACC	1 cut(s)	412
AspLEI	GCGC	1 cut(s)	89
AspS9I	GGNCC	2 cut(s)	271, 450
AsuC2I	CCSGG	2 cut(s)	187, 311
AsuHPI	GGTGA	1 cut(s)	490
AvaI	CYCGRG	1 cut(s)	17
BaeI	ACNNNNGTAYC	2 cut(s)	404, 437
BalI	TGGCCA	2 cut(s)	224, 578
BanI	GGYRCC	3 cut(s)	209, 412, 529
Bbv12I	GWGCWC	1 cut(s)	24
BbvI	GCAGC	6 cut(s)	228, 364, 383, 386, 437, 527
BccI	CCATC	2 cut(s)	133, 233
BceAI	ACGGC	1 cut(s)	77
BcgI	CGANNNNNNTGC	4 cut(s)	208, 242, 363, 397
BciT130I	CCWGG	2 cut(s)	98, 454
BcnI	CCSGG	2 cut(s)	187, 311
BcoDI	GTCTC	3 cut(s)	244, 279, 318
BcuI	ACTAGT	1 cut(s)	199
BfaI	CTAG	2 cut(s)	200, 618
BfmI	CTRYAG	1 cut(s)	214
BglII	AGATCT	1 cut(s)	542
BisI	GCNGC	9 cut(s)	90, 217, 372, 375, 378, 426, 471, 474, 516
BlsI	GCNGC	9 cut(s)	91, 218, 373, 376, 379, 427, 472, 475, 517
Bme1390I	CCNGG	4 cut(s)	98, 187, 311, 454
BmeT110I	CYCGRG	1 cut(s)	17
BmgT120I	GGNCC	2 cut(s)	271, 450
BmiI	GGNNCC	4 cut(s)	83, 211, 414, 531
BmrFI	CCNGG	4 cut(s)	98, 187, 311, 454
BmrI	ACTGGG	1 cut(s)	247
BmsI	GCATC	1 cut(s)	389
BmuI	ACTGGG	1 cut(s)	247
BplI	GAGNNNNNCTC	2 cut(s)	224, 256
BpuMI	CCSGG	2 cut(s)	187, 311
BsaJI	CCNNGG	2 cut(s)	97, 579
BsaXI	ACNNNNNCTCC	4 cut(s)	222, 252, 396, 426
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 317
Bse118I	RCCGGY	1 cut(s)	206
Bse1I	ACTGG	2 cut(s)	253, 533
Bse3DI	GCAATG	1 cut(s)	414
BseBI	CCWGG	2 cut(s)	98, 454
BseDI	CCNNGG	2 cut(s)	97, 579
BseLI	CCNNNNNNNGG	2 cut(s)	139, 317
BseMI	GCAATG	1 cut(s)	414
BseNI	ACTGG	2 cut(s)	253, 533
BseRI	GAGGAG	2 cut(s)	336, 344
BseXI	GCAGC	6 cut(s)	228, 364, 383, 386, 437, 527
Bsh1236I	CGCG	2 cut(s)	87, 128
BshFI	GGCC	6 cut(s)	173, 224, 272, 317, 452, 578
BshNI	GGYRCC	3 cut(s)	209, 412, 529
BsiHKAI	GWGCWC	1 cut(s)	24
BsiHKCI	CYCGRG	1 cut(s)	17
BsiSI	CCGG	5 cut(s)	186, 195, 207, 311, 318
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	2 cut(s)	139, 317
BsmAI	GTCTC	3 cut(s)	244, 279, 318
BsmBI	CGTCTC	1 cut(s)	318
BsmFI	GGGAC	1 cut(s)	115
BsnI	GGCC	6 cut(s)	173, 224, 272, 317, 452, 578
BsoBI	CYCGRG	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp143I	GATC	3 cut(s)	117, 542, 614
Bsp19I	CCATGG	1 cut(s)	579
BspACI	CCGC	6 cut(s)	85, 90, 126, 470, 473, 476
BspANI	GGCC	6 cut(s)	173, 224, 272, 317, 452, 578
BspFNI	CGCG	2 cut(s)	87, 128
BspLI	GGNNCC	4 cut(s)	83, 211, 414, 531
BspMAI	CTGCAG	1 cut(s)	218
BspPI	GGATC	1 cut(s)	622
BspT107I	GGYRCC	3 cut(s)	209, 412, 529
BsrDI	GCAATG	1 cut(s)	414
BsrFI	RCCGGY	1 cut(s)	206
BsrI	ACTGG	2 cut(s)	253, 533
BssAI	RCCGGY	1 cut(s)	206
BssECI	CCNNGG	2 cut(s)	97, 579
BssMI	GATC	3 cut(s)	117, 542, 614
BssT1I	CCWWGG	1 cut(s)	579
Bst2UI	CCWGG	2 cut(s)	98, 454
Bst4CI	ACNGT	3 cut(s)	420, 550, 627
Bst6I	CTCTTC	2 cut(s)	275, 333
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstC8I	GCNNGC	1 cut(s)	214
BstDSI	CCRYGG	1 cut(s)	579
BstFNI	CGCG	2 cut(s)	87, 128
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	3 cut(s)	120, 545, 617
BstMAI	GTCTC	3 cut(s)	244, 279, 318
BstMBI	GATC	3 cut(s)	117, 542, 614
BstMWI	GCNNNNNNNGC	3 cut(s)	377, 383, 470
BstNI	CCWGG	2 cut(s)	98, 454
BstSCI	CCNGG	4 cut(s)	96, 185, 309, 452
BstSFI	CTRYAG	1 cut(s)	214
BstUI	CGCG	2 cut(s)	87, 128
BstV1I	GCAGC	6 cut(s)	228, 364, 383, 386, 437, 527
BstX2I	RGATCY	2 cut(s)	542, 614
BstYI	RGATCY	2 cut(s)	542, 614
BsuRI	GGCC	6 cut(s)	173, 224, 272, 317, 452, 578
BtgI	CCRYGG	1 cut(s)	579
BtsIMutI	CAGTG	2 cut(s)	405, 416
Cac8I	GCNNGC	1 cut(s)	214
CaiI	CAGNNNCTG	1 cut(s)	377
CfoI	GCGC	1 cut(s)	89
Cfr10I	RCCGGY	1 cut(s)	206
Cfr13I	GGNCC	2 cut(s)	271, 450
CseI	GACGC	1 cut(s)	117
Csp6I	GTAC	1 cut(s)	413
CviAII	CATG	4 cut(s)	175, 220, 292, 580
CviQI	GTAC	1 cut(s)	413
DpnI	GATC	3 cut(s)	119, 544, 616
DpnII	GATC	3 cut(s)	117, 542, 614
EaeI	YGGCCR	3 cut(s)	222, 315, 576
Eam1104I	CTCTTC	2 cut(s)	275, 333
EarI	CTCTTC	2 cut(s)	275, 333
Eco130I	CCWWGG	1 cut(s)	579
Eco32I	GATATC	1 cut(s)	40
Eco88I	CYCGRG	1 cut(s)	17
EcoRII	CCWGG	2 cut(s)	96, 452
EcoRV	GATATC	1 cut(s)	40
EcoT14I	CCWWGG	1 cut(s)	579
ErhI	CCWWGG	1 cut(s)	579
Esp3I	CGTCTC	1 cut(s)	318
FaeI	CATG	4 cut(s)	178, 223, 295, 583
FaiI	YATR	8 cut(s)	176, 221, 263, 293, 437, 447, 581, 587
FalI	AAGNNNNNCTT	2 cut(s)	335, 367
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	4 cut(s)	174, 219, 291, 579
Fnu4HI	GCNGC	9 cut(s)	90, 217, 372, 375, 378, 426, 471, 474, 516
Fsp4HI	GCNGC	9 cut(s)	90, 217, 372, 375, 378, 426, 471, 474, 516
FspBI	CTAG	2 cut(s)	200, 618
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	9 cut(s)	90, 217, 372, 375, 378, 426, 471, 474, 516
HaeIII	GGCC	6 cut(s)	173, 224, 272, 317, 452, 578
HapII	CCGG	5 cut(s)	186, 195, 207, 311, 318
HgaI	GACGC	1 cut(s)	117
HhaI	GCGC	1 cut(s)	89
Hin1II	CATG	4 cut(s)	178, 223, 295, 583
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HincII	GTYRAC	1 cut(s)	600
HindII	GTYRAC	1 cut(s)	600
HpaI	GTTAAC	1 cut(s)	600
HpaII	CCGG	5 cut(s)	186, 195, 207, 311, 318
HphI	GGTGA	1 cut(s)	490
Hpy166II	GTNNAC	3 cut(s)	247, 600, 623
Hpy188I	TCNGA	2 cut(s)	230, 542
Hpy8I	GTNNAC	3 cut(s)	247, 600, 623
Hpy99I	CGWCG	2 cut(s)	53, 113
HpyAV	CCTTC	2 cut(s)	337, 520
HpyCH4III	ACNGT	3 cut(s)	420, 550, 627
HpyCH4V	TGCA	2 cut(s)	216, 380
HpyF10VI	GCNNNNNNNGC	3 cut(s)	377, 383, 470
Hsp92II	CATG	4 cut(s)	178, 223, 295, 583
HspAI	GCGC	1 cut(s)	87
KpnI	GGTACC	1 cut(s)	416
KspAI	GTTAAC	1 cut(s)	600
Kzo9I	GATC	3 cut(s)	117, 542, 614
LmnI	GCTCC	6 cut(s)	77, 87, 101, 404, 461, 512
Lsp1109I	GCAGC	6 cut(s)	228, 364, 383, 386, 437, 527
LweI	GCATC	1 cut(s)	389
MaeI	CTAG	2 cut(s)	200, 618
MaeIII	GTNAC	2 cut(s)	363, 478
MalI	GATC	3 cut(s)	119, 544, 616
MboI	GATC	3 cut(s)	117, 542, 614
MboII	GAAGA	3 cut(s)	292, 347, 350
MflI	RGATCY	2 cut(s)	542, 614
MhlI	GDGCHC	1 cut(s)	24
MlsI	TGGCCA	2 cut(s)	224, 578
MluNI	TGGCCA	2 cut(s)	224, 578
MmeI	TCCRAC	2 cut(s)	237, 544
MnlI	CCTC	8 cut(s)	20, 26, 259, 314, 322, 325, 439, 560
Mox20I	TGGCCA	2 cut(s)	224, 578
MscI	TGGCCA	2 cut(s)	224, 578
MseI	TTAA	3 cut(s)	156, 168, 599
MslI	CAYNNNNRTG	1 cut(s)	266
Msp20I	TGGCCA	2 cut(s)	224, 578
MspA1I	CMGCKG	1 cut(s)	377
MspI	CCGG	5 cut(s)	186, 195, 207, 311, 318
MspR9I	CCNGG	4 cut(s)	98, 187, 311, 454
MvaI	CCWGG	2 cut(s)	98, 454
MvnI	CGCG	2 cut(s)	87, 128
MwoI	GCNNNNNNNGC	3 cut(s)	377, 383, 470
NciI	CCSGG	2 cut(s)	187, 311
NcoI	CCATGG	1 cut(s)	579
NdeII	GATC	3 cut(s)	117, 542, 614
NlaIII	CATG	4 cut(s)	178, 223, 295, 583
NlaIV	GGNNCC	4 cut(s)	83, 211, 414, 531
NmuCI	GTSAC	1 cut(s)	478
PaeR7I	CTCGAG	1 cut(s)	17
PcsI	WCGNNNNNNNCGW	2 cut(s)	48, 54
PkrI	GCNGC	9 cut(s)	91, 218, 373, 376, 379, 427, 472, 475, 517
Psp6I	CCWGG	2 cut(s)	96, 452
PspGI	CCWGG	2 cut(s)	96, 452
PspN4I	GGNNCC	4 cut(s)	83, 211, 414, 531
PspPI	GGNCC	2 cut(s)	271, 450
PspXI	VCTCGAGB	1 cut(s)	17
PstI	CTGCAG	1 cut(s)	218
PstNI	CAGNNNCTG	1 cut(s)	377
PsuI	RGATCY	2 cut(s)	542, 614
PvuII	CAGCTG	1 cut(s)	377
RsaI	GTAC	1 cut(s)	414
RsaNI	GTAC	1 cut(s)	413
RseI	CAYNNNNRTG	1 cut(s)	266
SaqAI	TTAA	3 cut(s)	156, 168, 599
SatI	GCNGC	9 cut(s)	90, 217, 372, 375, 378, 426, 471, 474, 516
Sau3AI	GATC	3 cut(s)	117, 542, 614
Sau96I	GGNCC	2 cut(s)	271, 450
ScrFI	CCNGG	4 cut(s)	98, 187, 311, 454
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	9 cut(s)	12, 18, 106, 270, 379, 458, 466, 520, 593
SfaNI	GCATC	1 cut(s)	389
SfcI	CTRYAG	1 cut(s)	214
Sfr274I	CTCGAG	1 cut(s)	17
SlaI	CTCGAG	1 cut(s)	17
SmiMI	CAYNNNNRTG	1 cut(s)	266
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
SpeI	ACTAGT	1 cut(s)	199
SsiI	CCGC	6 cut(s)	85, 90, 126, 470, 473, 476
SspMI	CTAG	2 cut(s)	200, 618
StyD4I	CCNGG	4 cut(s)	96, 185, 309, 452
StyI	CCWWGG	1 cut(s)	579
TaaI	ACNGT	3 cut(s)	420, 550, 627
TaqI	TCGA	4 cut(s)	12, 18, 42, 57
TauI	GCSGC	3 cut(s)	92, 473, 476
Tru1I	TTAA	3 cut(s)	156, 168, 599
Tru9I	TTAA	3 cut(s)	156, 168, 599
TscAI	CASTG	2 cut(s)	405, 423
TseFI	GTSAC	1 cut(s)	478
TseI	GCWGC	6 cut(s)	216, 371, 374, 377, 425, 515
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	3 cut(s)	293, 308, 424
TspGWI	ACGGA	1 cut(s)	232
TspRI	CASTG	2 cut(s)	405, 423
XhoI	CTCGAG	1 cut(s)	17
XspI	CTAG	2 cut(s)	200, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.