Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004934

Physical Location & Seq

Genomic Coordinates Forward (+)

15538816 .. 15539418

Gene Structure 603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G43630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGAATCTCACAACACCTTGAACCTAGACATGGAGAAAGATCAAGAAAAGGCTTTTGACTACTCCAAACGAGCTCAATGGCTAAGAGCCGCTGTGCTTGGTGCCAACGACGGTCTTGTCTCGACGGCTTCACTTATGATGGGTGTTGGTGCGGTCAAGCAAAACGTCAAGATCATGATCTTAACTGGTTTTGCCGGTTTAGTGGCCGGAGCTTGTAGCATGGCGATTGGAGAGTTTGTCTCTGTTTACTCTCAATATGACATAGAGGTAGCTCAGATGAAGAGAGAGACCGGAGGAGAGATTGAGAAAGAGAAGCTTCCAAGTCCAACACAAGCGGCTGCAGCATCTGCGTTAGCGTTTTCTCTTGGGGCGATGGTGCCGTTATTGGCGGCAGCGTTTGTGAAAGAGTATAAAGTGAGGATTGGTGCAATAGTGGCAGCGGTTACGTTGGCGTTGGTGATGTTTGGATGGTTAGGGGCGGTTTTGGGGAAAGCACCAGTGGTTAAGTCGTCGCTTAGGGTTTTGGTTGGAGGATGGTTAGCTATGGCCATTACGTATGGTTTTACAAAACTCATTGGGTCACATAGTCATATGTATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000302 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0006950 GO:0006979 GO:0008150 GO:0008324 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0032870 GO:0033554 GO:0034220 GO:0034599 GO:0034614 GO:0034755 GO:0035690 GO:0042221 GO:0042493 GO:0042592 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071421 GO:0071495 GO:0071731 GO:0071732 GO:0097366 GO:0097577 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

200

Amino Acids

21.19

Weight (kDa)

8.95

Isoelectric Point (pI)

34.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VIT1	PF01988	28 - 97	1.4e-23	VIT family
VIT1	PF01988	92 - 189	3.8e-18	VIT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21140 AT1G76800 AT3G43630 AT3G43660
fragaria_vesca	FvH4_2g13960 FvH4_2g13960
malus_domestica	MD05G1023100.v1.1 MD10G1024000.v1.1
prunus_persica	Prupe.8G027700_v2.0.a1
pyrus_communis	pycom05g01460 pycom10g01590
rosa_chinensis	RchiOBHm_Chr6g0275791
rosa_laevigata	RLG00000013431 RLG00000013434
rosa_multiflora	Rmu_sc0005406.1_g000003 Rmu_sc0007822.1_g000005
rosa_roxburghii	Rroxscaffold_7G00192860 Rroxscaffold_7G00192920
rosa_rugosa	Rorug06G0096200 Rorug06G0096200
rosa_samantha	Rh6AG208200 Rh6AG208400 Rh6BG210800 Rh6BG210900 Rh6BG212400 Rh6CG214400 Rh6CG214500 Rh6DG204200
rosa_wichuraiana	Rw6G018150 Rw6G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	116
AccB1I	GGYRCC	2 cut(s)	101, 376
AciI	CCGC	6 cut(s)	90, 152, 335, 389, 440, 479
AcoI	YGGCCR	2 cut(s)	204, 546
AfiI	CCNNNNNNNGG	1 cut(s)	31
AgsI	TTSAA	1 cut(s)	22
AluBI	AGCT	5 cut(s)	74, 212, 272, 316, 542
AluI	AGCT	5 cut(s)	74, 212, 272, 316, 542
Alw21I	GWGCWC	1 cut(s)	76
Alw26I	GTCTC	3 cut(s)	124, 244, 281
AlwNI	CAGNNNCTG	1 cut(s)	347
AoxI	GGCC	2 cut(s)	204, 546
ApeKI	GCWGC	4 cut(s)	338, 341, 392, 437
AsuHPI	GGTGA	1 cut(s)	469
BalI	TGGCCA	1 cut(s)	548
BanI	GGYRCC	2 cut(s)	101, 376
BanII	GRGCYC	1 cut(s)	76
Bbv12I	GWGCWC	1 cut(s)	76
BbvI	GCAGC	4 cut(s)	325, 353, 404, 449
BccI	CCATC	4 cut(s)	133, 367, 462, 528
BceAI	ACGGC	2 cut(s)	141, 364
BcoDI	GTCTC	3 cut(s)	124, 244, 281
BfaI	CTAG	1 cut(s)	26
BfmI	CTRYAG	1 cut(s)	339
BisI	GCNGC	7 cut(s)	90, 336, 339, 342, 390, 393, 438
BlsI	GCNGC	7 cut(s)	91, 337, 340, 343, 391, 394, 439
BmiI	GGNNCC	2 cut(s)	103, 378
BmsI	GCATC	1 cut(s)	353
BplI	GAGNNNNNCTC	2 cut(s)	224, 256
Bpu10I	CCTNAGC	1 cut(s)	515
BsaAI	YACGTR	1 cut(s)	555
BsaBI	GATNNNNATC	1 cut(s)	176
BsaI	GGTCTC	1 cut(s)	281
BsaWI	WCCGGW	1 cut(s)	290
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse118I	RCCGGY	1 cut(s)	194
Bse1I	ACTGG	2 cut(s)	190, 497
Bse8I	GATNNNNATC	1 cut(s)	176
BseGI	GGATG	2 cut(s)	473, 539
BseJI	GATNNNNATC	1 cut(s)	176
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMII	CTCAG	1 cut(s)	287
BseNI	ACTGG	2 cut(s)	190, 497
BseRI	GAGGAG	1 cut(s)	309
BseXI	GCAGC	4 cut(s)	325, 353, 404, 449
BshFI	GGCC	2 cut(s)	206, 548
BshNI	GGYRCC	2 cut(s)	101, 376
BsiHKAI	GWGCWC	1 cut(s)	76
BsiSI	CCGG	3 cut(s)	195, 207, 291
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmAI	GTCTC	3 cut(s)	124, 244, 281
BsnI	GGCC	2 cut(s)	206, 548
Bso31I	GGTCTC	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp143I	GATC	3 cut(s)	40, 171, 177
BspACI	CCGC	6 cut(s)	90, 152, 335, 389, 440, 479
BspANI	GGCC	2 cut(s)	206, 548
BspCNI	CTCAG	1 cut(s)	286
BspHI	TCATGA	1 cut(s)	174
BspLI	GGNNCC	2 cut(s)	103, 378
BspMAI	CTGCAG	1 cut(s)	343
BspT107I	GGYRCC	2 cut(s)	101, 376
BspTNI	GGTCTC	1 cut(s)	281
BsrFI	RCCGGY	1 cut(s)	194
BsrI	ACTGG	2 cut(s)	190, 497
BssAI	RCCGGY	1 cut(s)	194
BssMI	GATC	3 cut(s)	40, 171, 177
Bst4CI	ACNGT	1 cut(s)	113
Bst6I	CTCTTC	1 cut(s)	275
BstAPI	GCANNNNNTGC	1 cut(s)	347
BstBAI	YACGTR	1 cut(s)	555
BstDEI	CTNAG	3 cut(s)	83, 273, 515
BstF5I	GGATG	2 cut(s)	473, 539
BstKTI	GATC	3 cut(s)	43, 174, 180
BstMAI	GTCTC	3 cut(s)	124, 244, 281
BstMBI	GATC	3 cut(s)	40, 171, 177
BstMWI	GCNNNNNNNGC	3 cut(s)	341, 347, 434
BstSFI	CTRYAG	1 cut(s)	339
BstSNI	TACGTA	1 cut(s)	555
BstV1I	GCAGC	4 cut(s)	325, 353, 404, 449
BsuRI	GGCC	2 cut(s)	206, 548
BtgZI	GCGATG	1 cut(s)	386
BtsCI	GGATG	2 cut(s)	473, 539
BtsIMutI	CAGTG	1 cut(s)	504
CaiI	CAGNNNCTG	1 cut(s)	347
CciI	TCATGA	1 cut(s)	174
Cfr10I	RCCGGY	1 cut(s)	194
CviAII	CATG	3 cut(s)	31, 175, 220
DdeI	CTNAG	3 cut(s)	83, 273, 515
DpnI	GATC	3 cut(s)	42, 173, 179
DpnII	GATC	3 cut(s)	40, 171, 177
DrdI	GACNNNNNNGTC	1 cut(s)	116
DseDI	GACNNNNNNGTC	1 cut(s)	116
EaeI	YGGCCR	2 cut(s)	204, 546
Eam1104I	CTCTTC	1 cut(s)	275
EarI	CTCTTC	1 cut(s)	275
Ecl136II	GAGCTC	1 cut(s)	74
Eco105I	TACGTA	1 cut(s)	555
Eco24I	GRGCYC	1 cut(s)	76
Eco31I	GGTCTC	1 cut(s)	281
Eco53kI	GAGCTC	1 cut(s)	74
EcoICRI	GAGCTC	1 cut(s)	74
EcoT38I	GRGCYC	1 cut(s)	76
FaeI	CATG	3 cut(s)	34, 178, 223
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FatI	CATG	3 cut(s)	30, 174, 219
FauNDI	CATATG	1 cut(s)	591
Fnu4HI	GCNGC	7 cut(s)	90, 336, 339, 342, 390, 393, 438
FokI	GGATG	2 cut(s)	480, 546
FriOI	GRGCYC	1 cut(s)	76
Fsp4HI	GCNGC	7 cut(s)	90, 336, 339, 342, 390, 393, 438
FspBI	CTAG	1 cut(s)	26
GluI	GCNGC	7 cut(s)	90, 336, 339, 342, 390, 393, 438
HaeIII	GGCC	2 cut(s)	206, 548
HapII	CCGG	3 cut(s)	195, 207, 291
Hin1II	CATG	3 cut(s)	34, 178, 223
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	3 cut(s)	195, 207, 291
HphI	GGTGA	1 cut(s)	469
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	1 cut(s)	276
Hpy188III	TCNNGA	4 cut(s)	44, 121, 169, 175
Hpy8I	GTNNAC	1 cut(s)	247
Hpy99I	CGWCG	3 cut(s)	113, 127, 514
HpyCH4III	ACNGT	1 cut(s)	113
HpyCH4IV	ACGT	3 cut(s)	165, 446, 554
HpyCH4V	TGCA	2 cut(s)	341, 428
HpyF10VI	GCNNNNNNNGC	3 cut(s)	341, 347, 434
HpyF3I	CTNAG	3 cut(s)	83, 273, 515
HpySE526I	ACGT	3 cut(s)	165, 446, 554
Hsp92II	CATG	3 cut(s)	34, 178, 223
Kzo9I	GATC	3 cut(s)	40, 171, 177
LmnI	GCTCC	1 cut(s)	209
LpnPI	CCDG	5 cut(s)	171, 208, 220, 304, 510
Lsp1109I	GCAGC	4 cut(s)	325, 353, 404, 449
LweI	GCATC	1 cut(s)	353
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	3 cut(s)	165, 446, 554
MaeIII	GTNAC	2 cut(s)	442, 579
MalI	GATC	3 cut(s)	42, 173, 179
MboI	GATC	3 cut(s)	40, 171, 177
MboII	GAAGA	1 cut(s)	292
MhlI	GDGCHC	1 cut(s)	76
MlsI	TGGCCA	1 cut(s)	548
MluNI	TGGCCA	1 cut(s)	548
MmeI	TCCRAC	2 cut(s)	350, 508
MnlI	CCTC	4 cut(s)	259, 287, 411, 524
Mox20I	TGGCCA	1 cut(s)	548
MscI	TGGCCA	1 cut(s)	548
MseI	TTAA	2 cut(s)	182, 504
MslI	CAYNNNNRTG	1 cut(s)	594
Msp20I	TGGCCA	1 cut(s)	548
MspA1I	CMGCKG	2 cut(s)	92, 440
MspI	CCGG	3 cut(s)	195, 207, 291
MwoI	GCNNNNNNNGC	3 cut(s)	341, 347, 434
NdeI	CATATG	1 cut(s)	591
NdeII	GATC	3 cut(s)	40, 171, 177
NlaIII	CATG	3 cut(s)	34, 178, 223
NlaIV	GGNNCC	2 cut(s)	103, 378
NmuCI	GTSAC	1 cut(s)	579
PagI	TCATGA	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	7 cut(s)	91, 337, 340, 343, 391, 394, 439
Ppu21I	YACGTR	1 cut(s)	555
Psp124BI	GAGCTC	1 cut(s)	76
PspN4I	GGNNCC	2 cut(s)	103, 378
PstI	CTGCAG	1 cut(s)	343
PstNI	CAGNNNCTG	1 cut(s)	347
RseI	CAYNNNNRTG	1 cut(s)	594
SacI	GAGCTC	1 cut(s)	76
SaqAI	TTAA	2 cut(s)	182, 504
SatI	GCNGC	7 cut(s)	90, 336, 339, 342, 390, 393, 438
Sau3AI	GATC	3 cut(s)	40, 171, 177
SduI	GDGCHC	1 cut(s)	76
SfaNI	GCATC	1 cut(s)	353
SfcI	CTRYAG	1 cut(s)	339
SmiMI	CAYNNNNRTG	1 cut(s)	594
SnaBI	TACGTA	1 cut(s)	555
SsiI	CCGC	6 cut(s)	90, 152, 335, 389, 440, 479
SspMI	CTAG	1 cut(s)	26
SstI	GAGCTC	1 cut(s)	76
TaaI	ACNGT	1 cut(s)	113
TaiI	ACGT	3 cut(s)	168, 449, 557
TaqI	TCGA	1 cut(s)	122
TauI	GCSGC	3 cut(s)	92, 338, 392
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	2 cut(s)	182, 504
Tru9I	TTAA	2 cut(s)	182, 504
TscAI	CASTG	1 cut(s)	504
TseFI	GTSAC	1 cut(s)	579
TseI	GCWGC	4 cut(s)	338, 341, 392, 437
Tsp45I	GTSAC	1 cut(s)	579
TspDTI	ATGAA	1 cut(s)	293
TspRI	CASTG	1 cut(s)	504
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.