Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004934

Physical Location & Seq

Genomic Coordinates Reverse (-)

39753267 .. 39754064

Gene Structure 798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG210900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCGTCAAATAGCCAAGAATCAGTAAATGGGGGCAAGTACCCTAACCCAACCATGACCAGCCTGGACCTCGAGCACCAACCCACCCAAGACCTCAATACTTCCCAGGACAACGACGACTTCGACTACTCCAAACGCTCCCAGTGGCTCCGCGCCGCCGTCCTGGGAGCCAACGACGGTCTGATCTCCACCGCGTCGTTAATGATGGGTGTTGGTGCTGTTAAGCAGGACATTAAAGCCATGATACTAACCGGGTTTGCCGGACTAGTAGCCGGTGGCTGCAGCATGGCCATCGGAGAGTTTGTCTCCGTTTACTCCCAGTTGGACATAGAGGTGGCCCAAATGAAGAGAGACAACAACAACAAGCAAAAGAACCCAGTGGTACACGTGGTAGAAGACAAGGAGGGAGAAGAGAAGGAGAACTTGCCAAACCCGTTACGAGCAGACGAGGAGGGAGTAGAGAAGGAGAACTTGCCAAACCCGTTACGAGCAGACGAGGAGGGAGTAGAGAAGGAGAACTTGCCAAACCCGTTACAAGCAGCAGGTGCATCGGCTCTTGCGTATTCAGTGGGAGCAATGGTACCACTGCTAGCAGCCTCGTTCATAAGGGAGTATAGGGCGAGGTTGGGAGCTGTGGCGGCGGCAGTGACATTGGCTTTGATGGTGTTTGGGTGGTTGGGAGCAGCTTTGGGGAAGGCACCAGTTCTGAGATCAACGATTAGGGTTTTGGTTGGAGGGTGGATGGCTATGGCTATAACCTTTGGGTTAACCAAGTTGATTGGATCTACTGGACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0034220 GO:0034755 GO:0042221 GO:0042592 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071421 GO:0097577 GO:0098655 GO:0098660 GO:0098662 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

265

Amino Acids

28.19

Weight (kDa)

4.92

Isoelectric Point (pI)

38.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VIT1	PF01988	50 - 257	1.6e-48	VIT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21140 AT1G76800 AT3G43630 AT3G43660
fragaria_vesca	FvH4_2g13960 FvH4_2g13960
malus_domestica	MD05G1023100.v1.1 MD10G1024000.v1.1
prunus_persica	Prupe.8G027700_v2.0.a1
pyrus_communis	pycom05g01460 pycom10g01590
rosa_chinensis	RchiOBHm_Chr6g0275791
rosa_laevigata	RLG00000013431 RLG00000013434
rosa_multiflora	Rmu_sc0005406.1_g000003 Rmu_sc0007822.1_g000005
rosa_roxburghii	Rroxscaffold_7G00192860 Rroxscaffold_7G00192920
rosa_rugosa	Rorug06G0096200 Rorug06G0096200
rosa_samantha	Rh6AG208200 Rh6AG208400 Rh6BG210800 Rh6BG210900 Rh6BG212400 Rh6CG214400 Rh6CG214500 Rh6DG204200
rosa_wichuraiana	Rw6G018150 Rw6G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	533
Acc36I	ACCTGC	1 cut(s)	533
Acc65I	GGTACC	1 cut(s)	580
AccB1I	GGYRCC	2 cut(s)	580, 697
AccII	CGCG	2 cut(s)	153, 194
AciI	CCGC	5 cut(s)	151, 156, 192, 638, 641
AclWI	GGATC	1 cut(s)	790
AcoI	YGGCCR	1 cut(s)	288
AcvI	CACGTG	1 cut(s)	388
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	41, 384, 582
AflIII	ACRYGT	1 cut(s)	385
AhlI	ACTAGT	1 cut(s)	265
AjnI	CCWGG	3 cut(s)	63, 105, 162
AluBI	AGCT	2 cut(s)	632, 686
AluI	AGCT	2 cut(s)	632, 686
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	2 cut(s)	310, 345
AlwI	GGATC	1 cut(s)	790
Ama87I	CYCGRG	1 cut(s)	71
AoxI	GGCC	2 cut(s)	288, 336
ApeKI	GCWGC	5 cut(s)	279, 282, 539, 593, 683
ArsI	GACNNNNNNTTYG	2 cut(s)	640, 672
Asp718I	GGTACC	1 cut(s)	580
AspLEI	GCGC	1 cut(s)	155
AspS9I	GGNCC	2 cut(s)	67, 337
AsuC2I	CCSGG	1 cut(s)	253
AsuNHI	GCTAGC	1 cut(s)	589
AvaI	CYCGRG	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	67
BalI	TGGCCA	1 cut(s)	290
BanI	GGYRCC	2 cut(s)	580, 697
BbrPI	CACGTG	1 cut(s)	388
BbsI	GAAGAC	1 cut(s)	402
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	5 cut(s)	266, 294, 551, 605, 695
BccI	CCATC	4 cut(s)	199, 299, 655, 736
BceAI	ACGGC	1 cut(s)	143
BcgI	CGANNNNNNTGC	4 cut(s)	274, 308, 531, 565
BciT130I	CCWGG	3 cut(s)	65, 107, 164
BcnI	CCSGG	1 cut(s)	253
BcoDI	GTCTC	2 cut(s)	310, 345
BcuI	ACTAGT	1 cut(s)	265
BfaI	CTAG	2 cut(s)	266, 590
BfmI	CTRYAG	1 cut(s)	280
BfuAI	ACCTGC	1 cut(s)	533
BisI	GCNGC	8 cut(s)	156, 280, 283, 540, 594, 639, 642, 684
BlsI	GCNGC	8 cut(s)	157, 281, 284, 541, 595, 640, 643, 685
Bme1390I	CCNGG	4 cut(s)	65, 107, 164, 253
Bme18I	GGWCC	1 cut(s)	67
BmeT110I	CYCGRG	1 cut(s)	71
BmgT120I	GGNCC	2 cut(s)	67, 337
BmiI	GGNNCC	4 cut(s)	149, 169, 582, 699
BmrFI	CCNGG	4 cut(s)	65, 107, 164, 253
BmrI	ACTGGG	3 cut(s)	136, 313, 371
BmsI	GCATC	1 cut(s)	557
BmtI	GCTAGC	1 cut(s)	593
BmuI	ACTGGG	3 cut(s)	136, 313, 371
BpiI	GAAGAC	1 cut(s)	402
BplI	GAGNNNNNCTC	2 cut(s)	290, 322
BpuMI	CCSGG	1 cut(s)	253
BsaAI	YACGTR	1 cut(s)	388
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	105, 163
BsaXI	ACNNNNNCTCC	4 cut(s)	288, 318, 564, 594
Bse118I	RCCGGY	1 cut(s)	272
Bse1I	ACTGG	5 cut(s)	142, 319, 377, 701, 793
Bse3DI	GCAATG	1 cut(s)	582
BseBI	CCWGG	3 cut(s)	65, 107, 164
BseDI	CCNNGG	2 cut(s)	105, 163
BseGI	GGATG	1 cut(s)	747
BseMI	GCAATG	1 cut(s)	582
BseMII	CTCAG	1 cut(s)	698
BseNI	ACTGG	5 cut(s)	142, 319, 377, 701, 793
BseRI	GAGGAG	2 cut(s)	464, 512
BseXI	GCAGC	5 cut(s)	266, 294, 551, 605, 695
Bsh1236I	CGCG	2 cut(s)	153, 194
BshFI	GGCC	2 cut(s)	290, 338
BshNI	GGYRCC	2 cut(s)	580, 697
BsiHKAI	GWGCWC	1 cut(s)	78
BsiHKCI	CYCGRG	1 cut(s)	71
BsiSI	CCGG	3 cut(s)	252, 261, 273
BsmAI	GTCTC	2 cut(s)	310, 345
BsnI	GGCC	2 cut(s)	290, 338
BsoBI	CYCGRG	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	3 cut(s)	183, 710, 782
BspACI	CCGC	5 cut(s)	151, 156, 192, 638, 641
BspANI	GGCC	2 cut(s)	290, 338
BspCNI	CTCAG	1 cut(s)	699
BspFNI	CGCG	2 cut(s)	153, 194
BspLI	GGNNCC	4 cut(s)	149, 169, 582, 699
BspMAI	CTGCAG	1 cut(s)	284
BspMI	ACCTGC	1 cut(s)	533
BspOI	GCTAGC	1 cut(s)	593
BspPI	GGATC	1 cut(s)	790
BspT107I	GGYRCC	2 cut(s)	580, 697
BsrDI	GCAATG	1 cut(s)	582
BsrFI	RCCGGY	1 cut(s)	272
BsrI	ACTGG	5 cut(s)	142, 319, 377, 701, 793
BssAI	RCCGGY	1 cut(s)	272
BssECI	CCNNGG	2 cut(s)	105, 163
BssMI	GATC	3 cut(s)	183, 710, 782
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	3 cut(s)	65, 107, 164
Bst4CI	ACNGT	2 cut(s)	179, 795
Bst6I	CTCTTC	2 cut(s)	341, 405
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstBAI	YACGTR	1 cut(s)	388
BstC8I	GCNNGC	1 cut(s)	591
BstDEI	CTNAG	1 cut(s)	707
BstF5I	GGATG	1 cut(s)	747
BstFNI	CGCG	2 cut(s)	153, 194
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	3 cut(s)	186, 713, 785
BstMAI	GTCTC	2 cut(s)	310, 345
BstMBI	GATC	3 cut(s)	183, 710, 782
BstMWI	GCNNNNNNNGC	2 cut(s)	545, 638
BstNI	CCWGG	3 cut(s)	65, 107, 164
BstSCI	CCNGG	4 cut(s)	63, 105, 162, 251
BstSFI	CTRYAG	1 cut(s)	280
BstUI	CGCG	2 cut(s)	153, 194
BstV1I	GCAGC	5 cut(s)	266, 294, 551, 605, 695
BstV2I	GAAGAC	1 cut(s)	402
BstX2I	RGATCY	1 cut(s)	782
BstYI	RGATCY	1 cut(s)	782
BsuRI	GGCC	2 cut(s)	290, 338
BtsCI	GGATG	1 cut(s)	747
BtsI	GCAGTG	2 cut(s)	584, 651
BtsIMutI	CAGTG	5 cut(s)	149, 384, 573, 584, 651
BveI	ACCTGC	1 cut(s)	533
Cac8I	GCNNGC	1 cut(s)	591
CfoI	GCGC	1 cut(s)	155
Cfr10I	RCCGGY	1 cut(s)	272
Cfr13I	GGNCC	2 cut(s)	67, 337
CseI	GACGC	1 cut(s)	183
Csp6I	GTAC	3 cut(s)	40, 383, 581
CviAII	CATG	3 cut(s)	55, 241, 286
CviQI	GTAC	3 cut(s)	40, 383, 581
DdeI	CTNAG	1 cut(s)	707
DpnI	GATC	3 cut(s)	185, 712, 784
DpnII	GATC	3 cut(s)	183, 710, 782
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	2 cut(s)	341, 405
EarI	CTCTTC	2 cut(s)	341, 405
Eco47I	GGWCC	1 cut(s)	67
Eco72I	CACGTG	1 cut(s)	388
Eco88I	CYCGRG	1 cut(s)	71
EcoRII	CCWGG	3 cut(s)	63, 105, 162
FaeI	CATG	3 cut(s)	58, 244, 289
FaiI	YATR	8 cut(s)	56, 242, 287, 329, 605, 615, 749, 755
FalI	AAGNNNNNCTT	6 cut(s)	407, 439, 455, 487, 503, 535
FatI	CATG	3 cut(s)	54, 240, 285
Fnu4HI	GCNGC	8 cut(s)	156, 280, 283, 540, 594, 639, 642, 684
FokI	GGATG	1 cut(s)	754
Fsp4HI	GCNGC	8 cut(s)	156, 280, 283, 540, 594, 639, 642, 684
FspBI	CTAG	2 cut(s)	266, 590
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	8 cut(s)	156, 280, 283, 540, 594, 639, 642, 684
HaeIII	GGCC	2 cut(s)	290, 338
HapII	CCGG	3 cut(s)	252, 261, 273
HgaI	GACGC	1 cut(s)	183
HhaI	GCGC	1 cut(s)	155
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	58, 244, 289
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HincII	GTYRAC	1 cut(s)	768
HindII	GTYRAC	1 cut(s)	768
HinfI	GANTC	1 cut(s)	20
HpaI	GTTAAC	1 cut(s)	768
HpaII	CCGG	3 cut(s)	252, 261, 273
Hpy166II	GTNNAC	3 cut(s)	313, 385, 768
Hpy188I	TCNGA	3 cut(s)	183, 296, 708
Hpy8I	GTNNAC	3 cut(s)	313, 385, 768
Hpy99I	CGWCG	3 cut(s)	119, 179, 199
HpyAV	CCTTC	4 cut(s)	409, 457, 505, 688
HpyCH4III	ACNGT	2 cut(s)	179, 795
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	2 cut(s)	282, 548
HpyF10VI	GCNNNNNNNGC	2 cut(s)	545, 638
HpyF3I	CTNAG	1 cut(s)	707
HpySE526I	ACGT	1 cut(s)	387
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	58, 244, 289
HspAI	GCGC	1 cut(s)	153
KpnI	GGTACC	1 cut(s)	584
KspAI	GTTAAC	1 cut(s)	768
Kzo9I	GATC	3 cut(s)	183, 710, 782
LmnI	GCTCC	6 cut(s)	143, 153, 167, 572, 629, 680
Lsp1109I	GCAGC	5 cut(s)	266, 294, 551, 605, 695
LweI	GCATC	1 cut(s)	557
MaeI	CTAG	2 cut(s)	266, 590
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	4 cut(s)	435, 483, 531, 646
MalI	GATC	3 cut(s)	185, 712, 784
MboI	GATC	3 cut(s)	183, 710, 782
MboII	GAAGA	3 cut(s)	358, 407, 422
MflI	RGATCY	1 cut(s)	782
MhlI	GDGCHC	1 cut(s)	78
MlsI	TGGCCA	1 cut(s)	290
MluNI	TGGCCA	1 cut(s)	290
MmeI	TCCRAC	2 cut(s)	303, 712
Mox20I	TGGCCA	1 cut(s)	290
MscI	TGGCCA	1 cut(s)	290
MseI	TTAA	4 cut(s)	200, 222, 234, 767
MslI	CAYNNNNRTG	1 cut(s)	332
Msp20I	TGGCCA	1 cut(s)	290
MspI	CCGG	3 cut(s)	252, 261, 273
MspR9I	CCNGG	4 cut(s)	65, 107, 164, 253
MvaI	CCWGG	3 cut(s)	65, 107, 164
MvnI	CGCG	2 cut(s)	153, 194
MwoI	GCNNNNNNNGC	2 cut(s)	545, 638
NciI	CCSGG	1 cut(s)	253
NdeII	GATC	3 cut(s)	183, 710, 782
NheI	GCTAGC	1 cut(s)	589
NlaIII	CATG	3 cut(s)	58, 244, 289
NlaIV	GGNNCC	4 cut(s)	149, 169, 582, 699
NmuCI	GTSAC	1 cut(s)	646
PaeR7I	CTCGAG	1 cut(s)	71
PaqCI	CACCTGC	1 cut(s)	533
PcsI	WCGNNNNNNNCGW	2 cut(s)	120, 557
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	8 cut(s)	157, 281, 284, 541, 595, 640, 643, 685
PmaCI	CACGTG	1 cut(s)	388
PmlI	CACGTG	1 cut(s)	388
Ppu21I	YACGTR	1 cut(s)	388
Psp6I	CCWGG	3 cut(s)	63, 105, 162
PspCI	CACGTG	1 cut(s)	388
PspGI	CCWGG	3 cut(s)	63, 105, 162
PspN4I	GGNNCC	4 cut(s)	149, 169, 582, 699
PspPI	GGNCC	2 cut(s)	67, 337
PspXI	VCTCGAGB	1 cut(s)	71
PstI	CTGCAG	1 cut(s)	284
PsuI	RGATCY	1 cut(s)	782
RsaI	GTAC	3 cut(s)	41, 384, 582
RsaNI	GTAC	3 cut(s)	40, 383, 581
RseI	CAYNNNNRTG	1 cut(s)	332
SaqAI	TTAA	4 cut(s)	200, 222, 234, 767
SatI	GCNGC	8 cut(s)	156, 280, 283, 540, 594, 639, 642, 684
Sau3AI	GATC	3 cut(s)	183, 710, 782
Sau96I	GGNCC	2 cut(s)	67, 337
ScrFI	CCNGG	4 cut(s)	65, 107, 164, 253
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	9 cut(s)	72, 96, 336, 390, 547, 626, 634, 688, 761
SfaNI	GCATC	1 cut(s)	557
SfcI	CTRYAG	1 cut(s)	280
Sfr274I	CTCGAG	1 cut(s)	71
SinI	GGWCC	1 cut(s)	67
SlaI	CTCGAG	1 cut(s)	71
SmiMI	CAYNNNNRTG	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SpeI	ACTAGT	1 cut(s)	265
SsiI	CCGC	5 cut(s)	151, 156, 192, 638, 641
SspMI	CTAG	2 cut(s)	266, 590
StyD4I	CCNGG	4 cut(s)	63, 105, 162, 251
TaaI	ACNGT	2 cut(s)	179, 795
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	2 cut(s)	72, 123
TauI	GCSGC	3 cut(s)	158, 641, 644
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	4 cut(s)	200, 222, 234, 767
Tru9I	TTAA	4 cut(s)	200, 222, 234, 767
TscAI	CASTG	5 cut(s)	149, 384, 573, 591, 651
TseFI	GTSAC	1 cut(s)	646
TseI	GCWGC	5 cut(s)	279, 282, 539, 593, 683
Tsp45I	GTSAC	1 cut(s)	646
TspDTI	ATGAA	2 cut(s)	359, 592
TspGWI	ACGGA	1 cut(s)	298
TspRI	CASTG	5 cut(s)	149, 384, 573, 591, 651
VpaK11BI	GGWCC	1 cut(s)	67
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
XhoI	CTCGAG	1 cut(s)	71
XspI	CTAG	2 cut(s)	266, 590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.