Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009261

Physical Location & Seq

Genomic Coordinates Forward (+)

7481184 .. 7483513

Gene Structure 2330 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G21360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGAAGAGAAAGAGATACGAGATGGAGAAGAAGAAGAAGACAGAGATTCAAACCGCCATTGAAGAGCTCTCTGTTTTCATCGTAACTAAACCTGCAGATAAGACTGAGGCTACACATATACCCTTGAGGCCTATTCTCTCCTTCTGCAGCTTAATCATCCAAGTTCTTGATAAGATAGGACCGACAATGGCTGTTCTTAGACAAGACATTGATCAAAATATTCAGAGATTAGAGAAATTTTATGAAACAGATTCCTGTGTTTACTCGAATTTGGCTGAGATTCTGAAGAAAGAAAAGGAGGAGGGAACATCCAAGATGGTTGCTAGTTGTGGTAGAGCTCTTTTTTGGCTCACTAGGACAATGGATTTTACTGCGGGTTTACTACGATTGTTGTCGAAAGAGATGTCGTCGAAAATGGAAGAACTTGTAGAAGAATGCTACATGACGACTTTAAAACCGCATCATGGATGGATCGCGTCTGCTGCTTTCAAAGTGTGTTTGAAGCTGGTGCCTGACAACAAGACGTTCATGGAAGCGATCGGTGCAAGAGACGAGAGCTATGATACCTTAAGAGAAGACATTGATACCTTGAGCTCATTGTTGACACCTATTCTCAAAGAAATCTACTTTGTTCTGGAACAATACGGGTTGAGCAGATTAAGATCGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0006869 GO:0008150 GO:0008289 GO:0010876 GO:0012505 GO:0017089 GO:0031974 GO:0031981 GO:0031984 GO:0032365 GO:0033036 GO:0033218 GO:0035091 GO:0035621 GO:0035627 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046625 GO:0046836 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051861 GO:0070013 GO:0070273 GO:0071702 GO:0071705 GO:0097001 GO:0097367 GO:0098791 GO:1901264 GO:1901981

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTP

Protein Analysis

223

Amino Acids

25.7

Weight (kDa)

6.85

Isoelectric Point (pI)

54.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GLTP	PF08718	40 - 181	7.2e-39	Glycolipid transfer protein (GLTP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21360 AT1G21360 AT1G21360 AT3G21260 AT3G21260 AT3G21260
fragaria_vesca	FvH4_2g14560
malus_domestica	MD05G1017200.v1.1 MD10G1017400.v1.1
prunus_persica	Prupe.8G021000_v2.0.a1
pyrus_communis	pycom10g01110
rosa_chinensis	RchiOBHm_Chr6g0276911
rosa_laevigata	RLG00000013355
rosa_multiflora	Rmu_sc0001425.1_g000018 Rmu_sc0003882.1_g000009
rosa_roxburghii	Rroxscaffold_7G00191800
rosa_rugosa	Rorug06G0104900
rosa_samantha	Rh6AG214800 Rh6BG219700 Rh6CG222300 Rh6DG212500
rosa_wichuraiana	Rw6G018790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	100
AccB1I	GGYRCC	1 cut(s)	508
AccII	CGCG	1 cut(s)	476
AciI	CCGC	3 cut(s)	54, 374, 458
AclWI	GGATC	1 cut(s)	479
AcsI	RAATTY	2 cut(s)	236, 268
AcuI	CTGAAG	1 cut(s)	305
AfiI	CCNNNNNNNGG	1 cut(s)	464
AflII	CTTAAG	1 cut(s)	568
AgsI	TTSAA	4 cut(s)	50, 62, 490, 502
AluBI	AGCT	6 cut(s)	67, 150, 338, 505, 558, 594
AluI	AGCT	6 cut(s)	67, 150, 338, 505, 558, 594
Alw21I	GWGCWC	3 cut(s)	69, 340, 596
Alw26I	GTCTC	1 cut(s)	543
AlwI	GGATC	1 cut(s)	479
AoxI	GGCC	1 cut(s)	128
ApeKI	GCWGC	2 cut(s)	147, 482
ApoI	RAATTY	2 cut(s)	236, 268
ArsI	GACNNNNNNTTYG	2 cut(s)	389, 421
AspS9I	GGNCC	1 cut(s)	179
AvaII	GGWCC	1 cut(s)	179
BanI	GGYRCC	1 cut(s)	508
BanII	GRGCYC	3 cut(s)	69, 340, 596
BbsI	GAAGAC	2 cut(s)	44, 582
Bbv12I	GWGCWC	3 cut(s)	69, 340, 596
BbvI	GCAGC	2 cut(s)	159, 469
BccI	CCATC	3 cut(s)	16, 310, 462
BclI	TGATCA	1 cut(s)	211
BcoDI	GTCTC	1 cut(s)	543
BfaI	CTAG	2 cut(s)	324, 354
BfmI	CTRYAG	2 cut(s)	93, 145
BfrI	CTTAAG	1 cut(s)	568
BfuAI	ACCTGC	1 cut(s)	100
BisI	GCNGC	2 cut(s)	148, 483
BlsI	GCNGC	2 cut(s)	149, 484
Bme18I	GGWCC	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	510
BmsI	GCATC	1 cut(s)	469
BpiI	GAAGAC	2 cut(s)	44, 582
BpuEI	CTTGAG	2 cut(s)	145, 610
Bsa29I	ATCGAT	1 cut(s)	665
BsaBI	GATNNNNATC	1 cut(s)	661
Bsc4I	CCNNNNNNNGG	1 cut(s)	464
Bse8I	GATNNNNATC	1 cut(s)	661
BseCI	ATCGAT	1 cut(s)	665
BseGI	GGATG	3 cut(s)	156, 308, 473
BseJI	GATNNNNATC	1 cut(s)	661
BseLI	CCNNNNNNNGG	1 cut(s)	464
BseMII	CTCAG	2 cut(s)	96, 267
BseRI	GAGGAG	1 cut(s)	314
BseXI	GCAGC	2 cut(s)	159, 469
Bsh1236I	CGCG	1 cut(s)	476
Bsh1285I	CGRYCG	1 cut(s)	540
BshFI	GGCC	1 cut(s)	130
BshNI	GGYRCC	1 cut(s)	508
BshVI	ATCGAT	1 cut(s)	665
BsiEI	CGRYCG	1 cut(s)	540
BsiHKAI	GWGCWC	3 cut(s)	69, 340, 596
BslI	CCNNNNNNNGG	1 cut(s)	464
BsmAI	GTCTC	1 cut(s)	543
BsmBI	CGTCTC	1 cut(s)	543
BsmI	GAATGC	1 cut(s)	440
BsnI	GGCC	1 cut(s)	130
Bsp1286I	GDGCHC	3 cut(s)	69, 340, 596
Bsp143I	GATC	4 cut(s)	211, 471, 537, 662
BspACI	CCGC	3 cut(s)	54, 374, 458
BspANI	GGCC	1 cut(s)	130
BspCNI	CTCAG	2 cut(s)	97, 268
BspDI	ATCGAT	1 cut(s)	665
BspFNI	CGCG	1 cut(s)	476
BspLI	GGNNCC	1 cut(s)	510
BspMAI	CTGCAG	2 cut(s)	97, 149
BspMI	ACCTGC	1 cut(s)	100
BspPI	GGATC	1 cut(s)	479
BspQI	GCTCTTC	1 cut(s)	57
BspT107I	GGYRCC	1 cut(s)	508
BspTI	CTTAAG	1 cut(s)	568
BssMI	GATC	4 cut(s)	211, 471, 537, 662
Bst6I	CTCTTC	1 cut(s)	57
BstAFI	CTTAAG	1 cut(s)	568
BstDEI	CTNAG	3 cut(s)	105, 197, 276
BstF5I	GGATG	3 cut(s)	156, 308, 473
BstFNI	CGCG	1 cut(s)	476
BstKTI	GATC	4 cut(s)	214, 474, 540, 665
BstMAI	GTCTC	1 cut(s)	543
BstMBI	GATC	4 cut(s)	211, 471, 537, 662
BstMCI	CGRYCG	1 cut(s)	540
BstMWI	GCNNNNNNNGC	2 cut(s)	482, 542
BstSFI	CTRYAG	2 cut(s)	93, 145
BstUI	CGCG	1 cut(s)	476
BstV1I	GCAGC	2 cut(s)	159, 469
BstV2I	GAAGAC	2 cut(s)	44, 582
Bsu15I	ATCGAT	1 cut(s)	665
BsuRI	GGCC	1 cut(s)	130
BsuTUI	ATCGAT	1 cut(s)	665
BtsCI	GGATG	3 cut(s)	156, 308, 473
BveI	ACCTGC	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	179
ClaI	ATCGAT	1 cut(s)	665
CseI	GACGC	1 cut(s)	465
CviAII	CATG	3 cut(s)	442, 464, 529
DdeI	CTNAG	3 cut(s)	105, 197, 276
DpnI	GATC	4 cut(s)	213, 473, 539, 664
DpnII	GATC	4 cut(s)	211, 471, 537, 662
DraI	TTTAAA	1 cut(s)	453
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Ecl136II	GAGCTC	3 cut(s)	67, 338, 594
Eco147I	AGGCCT	1 cut(s)	130
Eco24I	GRGCYC	3 cut(s)	69, 340, 596
Eco47I	GGWCC	1 cut(s)	179
Eco53kI	GAGCTC	3 cut(s)	67, 338, 594
Eco57I	CTGAAG	1 cut(s)	305
EcoICRI	GAGCTC	3 cut(s)	67, 338, 594
EcoT38I	GRGCYC	3 cut(s)	69, 340, 596
Esp3I	CGTCTC	1 cut(s)	543
FaeI	CATG	3 cut(s)	445, 467, 532
FaiI	YATR	7 cut(s)	117, 119, 243, 443, 465, 530, 561
FatI	CATG	3 cut(s)	441, 463, 528
FauI	CCCGC	1 cut(s)	367
FbaI	TGATCA	1 cut(s)	211
Fnu4HI	GCNGC	2 cut(s)	148, 483
FokI	GGATG	3 cut(s)	143, 295, 480
FriOI	GRGCYC	3 cut(s)	69, 340, 596
Fsp4HI	GCNGC	2 cut(s)	148, 483
FspBI	CTAG	2 cut(s)	324, 354
GluI	GCNGC	2 cut(s)	148, 483
HaeIII	GGCC	1 cut(s)	130
HgaI	GACGC	1 cut(s)	465
Hin1II	CATG	3 cut(s)	445, 467, 532
HincII	GTYRAC	1 cut(s)	603
HindII	GTYRAC	1 cut(s)	603
HinfI	GANTC	3 cut(s)	46, 251, 280
Hpy166II	GTNNAC	3 cut(s)	262, 380, 603
Hpy188I	TCNGA	2 cut(s)	225, 285
Hpy188III	TCNNGA	2 cut(s)	167, 635
Hpy8I	GTNNAC	3 cut(s)	262, 380, 603
Hpy99I	CGWCG	1 cut(s)	412
HpyAV	CCTTC	1 cut(s)	151
HpyCH4IV	ACGT	1 cut(s)	524
HpyCH4V	TGCA	3 cut(s)	95, 147, 545
HpyF10VI	GCNNNNNNNGC	2 cut(s)	482, 542
HpyF3I	CTNAG	3 cut(s)	105, 197, 276
HpySE526I	ACGT	1 cut(s)	524
Hsp92II	CATG	3 cut(s)	445, 467, 532
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	4 cut(s)	211, 471, 537, 662
LguI	GCTCTTC	1 cut(s)	57
LpnPI	CCDG	5 cut(s)	105, 268, 491, 525, 620
Lsp1109I	GCAGC	2 cut(s)	159, 469
LweI	GCATC	1 cut(s)	469
MaeI	CTAG	2 cut(s)	324, 354
MaeII	ACGT	1 cut(s)	524
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	4 cut(s)	213, 473, 539, 664
MboI	GATC	4 cut(s)	211, 471, 537, 662
MhlI	GDGCHC	3 cut(s)	69, 340, 596
MluCI	AATT	2 cut(s)	236, 268
MnlI	CCTC	4 cut(s)	100, 120, 292, 295
MseI	TTAA	4 cut(s)	152, 452, 569, 659
MspCI	CTTAAG	1 cut(s)	568
Mva1269I	GAATGC	1 cut(s)	440
MvnI	CGCG	1 cut(s)	476
MwoI	GCNNNNNNNGC	2 cut(s)	482, 542
NdeII	GATC	4 cut(s)	211, 471, 537, 662
NlaIII	CATG	3 cut(s)	445, 467, 532
NlaIV	GGNNCC	1 cut(s)	510
PceI	AGGCCT	1 cut(s)	130
PciSI	GCTCTTC	1 cut(s)	57
PctI	GAATGC	1 cut(s)	440
PfeI	GAWTC	3 cut(s)	46, 251, 280
PkrI	GCNGC	2 cut(s)	149, 484
Ple19I	CGATCG	1 cut(s)	540
Psp124BI	GAGCTC	3 cut(s)	69, 340, 596
PspN4I	GGNNCC	1 cut(s)	510
PspPI	GGNCC	1 cut(s)	179
PstI	CTGCAG	2 cut(s)	97, 149
PvuI	CGATCG	1 cut(s)	540
SacI	GAGCTC	3 cut(s)	69, 340, 596
SapI	GCTCTTC	1 cut(s)	57
SaqAI	TTAA	4 cut(s)	152, 452, 569, 659
SatI	GCNGC	2 cut(s)	148, 483
Sau3AI	GATC	4 cut(s)	211, 471, 537, 662
Sau96I	GGNCC	1 cut(s)	179
SduI	GDGCHC	3 cut(s)	69, 340, 596
SfaNI	GCATC	1 cut(s)	469
SfcI	CTRYAG	2 cut(s)	93, 145
SinI	GGWCC	1 cut(s)	179
SmlI	CTYRAG	3 cut(s)	124, 568, 589
SmoI	CTYRAG	3 cut(s)	124, 568, 589
Sse9I	AATT	2 cut(s)	236, 268
SseBI	AGGCCT	1 cut(s)	130
SsiI	CCGC	3 cut(s)	54, 374, 458
SspI	AATATT	1 cut(s)	220
SspMI	CTAG	2 cut(s)	324, 354
SstI	GAGCTC	3 cut(s)	69, 340, 596
StuI	AGGCCT	1 cut(s)	130
TaiI	ACGT	1 cut(s)	527
TaqI	TCGA	4 cut(s)	266, 395, 410, 665
TaqII	GACCGA	1 cut(s)	196
TasI	AATT	2 cut(s)	236, 268
TfiI	GAWTC	3 cut(s)	46, 251, 280
Tru1I	TTAA	4 cut(s)	152, 452, 569, 659
Tru9I	TTAA	4 cut(s)	152, 452, 569, 659
TseI	GCWGC	2 cut(s)	147, 482
TspDTI	ATGAA	4 cut(s)	17, 67, 258, 517
Vha464I	CTTAAG	1 cut(s)	568
VpaK11BI	GGWCC	1 cut(s)	179
XapI	RAATTY	2 cut(s)	236, 268
XspI	CTAG	2 cut(s)	324, 354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.