Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009261

Physical Location & Seq

Genomic Coordinates Forward (+)

39249034 .. 39251732

Gene Structure 2699 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24841

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGCTGTTTTAAGACAAGATGTTCATCAGAATATTCGGAGATTGGAAACGAGGAACGAATCTGATCCTTCAGCATATTCAAATATGGTTGAGATATTGAAAACAGAAGCCACGGACGGCACTGCAAGAAATCTTACAAGTTGTAGTAGAGCCTTCGTTTGGCTCACCAGATCCTTGGATTTTACGGCAGAGCTATTGCAAAATTTAGCAGGAAACCCAGGGCAGAACATGAAGCAGGCAGTGGAAGAATCTTACAACCTCACTTTAAAGCCATGGCATAGATGGATTTCATCAGCTGCTTCTAAAGTAGCTCTAATGTTAGTGCCTGACAATGAGACCTTCATTAGTAGTCTCATGGCCAAAGATGAAAGCTATGACAACTTGAAAGTTGAAATGGAAACCTTGGTTTCATTACTTCTGCCTTATCTTGAGCAGATCCACTCCATCCTGAGGTTTTATCACTTGGACAAGTTAAAGGCTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0006869 GO:0008150 GO:0008289 GO:0010876 GO:0012505 GO:0017089 GO:0031974 GO:0031981 GO:0031984 GO:0032365 GO:0033036 GO:0033218 GO:0035091 GO:0035621 GO:0035627 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046625 GO:0046836 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051861 GO:0070013 GO:0070273 GO:0071702 GO:0071705 GO:0097001 GO:0097367 GO:0098791 GO:1901264 GO:1901981

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTP

Protein Analysis

161

Amino Acids

18.42

Weight (kDa)

5.8

Isoelectric Point (pI)

55.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GLTP	PF08718	1 - 119	4.8e-32	Glycolipid transfer protein (GLTP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21360 AT1G21360 AT1G21360 AT3G21260 AT3G21260 AT3G21260
fragaria_vesca	FvH4_2g14560
malus_domestica	MD05G1017200.v1.1 MD10G1017400.v1.1
prunus_persica	Prupe.8G021000_v2.0.a1
pyrus_communis	pycom10g01110
rosa_chinensis	RchiOBHm_Chr6g0276911
rosa_laevigata	RLG00000013355
rosa_multiflora	Rmu_sc0001425.1_g000018 Rmu_sc0003882.1_g000009
rosa_roxburghii	Rroxscaffold_7G00191800
rosa_rugosa	Rorug06G0104900
rosa_samantha	Rh6AG214800 Rh6BG219700 Rh6CG222300 Rh6DG212500
rosa_wichuraiana	Rw6G018790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	59, 165, 430
AcoI	YGGCCR	1 cut(s)	357
AcsI	RAATTY	1 cut(s)	202
AcuI	CTGAAG	1 cut(s)	54
AfiI	CCNNNNNNNGG	2 cut(s)	159, 450
AgsI	TTSAA	4 cut(s)	81, 100, 385, 392
AjnI	CCWGG	1 cut(s)	217
AluBI	AGCT	4 cut(s)	193, 296, 311, 372
AluI	AGCT	4 cut(s)	193, 296, 311, 372
Alw26I	GTCTC	2 cut(s)	329, 356
AlwI	GGATC	3 cut(s)	59, 165, 430
AoxI	GGCC	1 cut(s)	357
ApeKI	GCWGC	1 cut(s)	296
ApoI	RAATTY	1 cut(s)	202
AsuHPI	GGTGA	1 cut(s)	157
AxyI	CCTNAGG	1 cut(s)	449
BalI	TGGCCA	1 cut(s)	359
BbvI	GCAGC	1 cut(s)	283
BccI	CCATC	2 cut(s)	276, 452
BceAI	ACGGC	2 cut(s)	133, 201
BciT130I	CCWGG	1 cut(s)	219
BcoDI	GTCTC	2 cut(s)	329, 356
BisI	GCNGC	1 cut(s)	297
BlsI	GCNGC	1 cut(s)	298
Bme1390I	CCNGG	1 cut(s)	219
BmrFI	CCNGG	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	449
BsaBI	GATNNNNATC	1 cut(s)	24
BsaI	GGTCTC	1 cut(s)	329
BsaJI	CCNNGG	6 cut(s)	111, 174, 217, 218, 272, 402
Bsc4I	CCNNNNNNNGG	2 cut(s)	159, 450
Bse21I	CCTNAGG	1 cut(s)	449
Bse8I	GATNNNNATC	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	219
BseDI	CCNNGG	6 cut(s)	111, 174, 217, 218, 272, 402
BseGI	GGATG	1 cut(s)	444
BseJI	GATNNNNATC	1 cut(s)	24
BseLI	CCNNNNNNNGG	2 cut(s)	159, 450
BseMII	CTCAG	1 cut(s)	440
BseXI	GCAGC	1 cut(s)	283
BshFI	GGCC	1 cut(s)	359
BslI	CCNNNNNNNGG	2 cut(s)	159, 450
BsmAI	GTCTC	2 cut(s)	329, 356
BsnI	GGCC	1 cut(s)	359
Bso31I	GGTCTC	1 cut(s)	329
Bsp143I	GATC	3 cut(s)	64, 170, 435
Bsp19I	CCATGG	1 cut(s)	272
BspANI	GGCC	1 cut(s)	359
BspCNI	CTCAG	1 cut(s)	441
BspPI	GGATC	3 cut(s)	59, 165, 430
BspTNI	GGTCTC	1 cut(s)	329
BssECI	CCNNGG	6 cut(s)	111, 174, 217, 218, 272, 402
BssMI	GATC	3 cut(s)	64, 170, 435
BssT1I	CCWWGG	3 cut(s)	174, 272, 402
Bst2UI	CCWGG	1 cut(s)	219
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	1 cut(s)	449
BstDSI	CCRYGG	2 cut(s)	111, 272
BstF5I	GGATG	1 cut(s)	444
BstKTI	GATC	3 cut(s)	67, 173, 438
BstMAI	GTCTC	2 cut(s)	329, 356
BstMBI	GATC	3 cut(s)	64, 170, 435
BstNI	CCWGG	1 cut(s)	219
BstSCI	CCNGG	1 cut(s)	217
BstV1I	GCAGC	1 cut(s)	283
BstX2I	RGATCY	2 cut(s)	170, 435
BstXI	CCANNNNNNTGG	1 cut(s)	175
BstYI	RGATCY	2 cut(s)	170, 435
Bsu36I	CCTNAGG	1 cut(s)	449
BsuRI	GGCC	1 cut(s)	359
BtgI	CCRYGG	2 cut(s)	111, 272
BtsCI	GGATG	1 cut(s)	444
BtsI	GCAGTG	2 cut(s)	120, 246
BtsIMutI	CAGTG	2 cut(s)	120, 246
Cac8I	GCNNGC	1 cut(s)	237
CviAII	CATG	3 cut(s)	229, 273, 355
DdeI	CTNAG	1 cut(s)	449
DpnI	GATC	3 cut(s)	66, 172, 437
DpnII	GATC	3 cut(s)	64, 170, 435
DraI	TTTAAA	1 cut(s)	267
EaeI	YGGCCR	1 cut(s)	357
Eco130I	CCWWGG	3 cut(s)	174, 272, 402
Eco31I	GGTCTC	1 cut(s)	329
Eco57I	CTGAAG	1 cut(s)	54
Eco81I	CCTNAGG	1 cut(s)	449
EcoRII	CCWGG	1 cut(s)	217
EcoT14I	CCWWGG	3 cut(s)	174, 272, 402
ErhI	CCWWGG	3 cut(s)	174, 272, 402
FaeI	CATG	3 cut(s)	232, 276, 358
FaiI	YATR	7 cut(s)	76, 86, 230, 274, 279, 356, 375
FatI	CATG	3 cut(s)	228, 272, 354
Fnu4HI	GCNGC	1 cut(s)	297
FokI	GGATG	1 cut(s)	431
Fsp4HI	GCNGC	1 cut(s)	297
GluI	GCNGC	1 cut(s)	297
HaeIII	GGCC	1 cut(s)	359
Hin1II	CATG	3 cut(s)	232, 276, 358
HinfI	GANTC	2 cut(s)	59, 248
HphI	GGTGA	1 cut(s)	157
Hpy188I	TCNGA	3 cut(s)	30, 39, 64
Hpy188III	TCNNGA	2 cut(s)	428, 448
HpyAV	CCTTC	3 cut(s)	78, 163, 349
HpyCH4V	TGCA	2 cut(s)	125, 199
HpyF3I	CTNAG	1 cut(s)	449
Hsp92II	CATG	3 cut(s)	232, 276, 358
Kzo9I	GATC	3 cut(s)	64, 170, 435
LpnPI	CCDG	7 cut(s)	181, 195, 204, 221, 231, 339, 461
Lsp1109I	GCAGC	1 cut(s)	283
MalI	GATC	3 cut(s)	66, 172, 437
MboI	GATC	3 cut(s)	64, 170, 435
MboII	GAAGA	1 cut(s)	257
MflI	RGATCY	2 cut(s)	170, 435
MlsI	TGGCCA	1 cut(s)	359
MluCI	AATT	1 cut(s)	202
MluNI	TGGCCA	1 cut(s)	359
MnlI	CCTC	3 cut(s)	45, 269, 444
Mox20I	TGGCCA	1 cut(s)	359
MscI	TGGCCA	1 cut(s)	359
MseI	TTAA	3 cut(s)	11, 266, 473
Msp20I	TGGCCA	1 cut(s)	359
MspA1I	CMGCKG	1 cut(s)	296
MspR9I	CCNGG	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	219
NcoI	CCATGG	1 cut(s)	272
NdeII	GATC	3 cut(s)	64, 170, 435
NlaIII	CATG	3 cut(s)	232, 276, 358
PasI	CCCWGGG	1 cut(s)	218
PfeI	GAWTC	2 cut(s)	59, 248
PkrI	GCNGC	1 cut(s)	298
Psp6I	CCWGG	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	217
PsuI	RGATCY	2 cut(s)	170, 435
PvuII	CAGCTG	1 cut(s)	296
SaqAI	TTAA	3 cut(s)	11, 266, 473
SatI	GCNGC	1 cut(s)	297
Sau3AI	GATC	3 cut(s)	64, 170, 435
ScrFI	CCNGG	1 cut(s)	219
SetI	ASST	8 cut(s)	195, 261, 298, 313, 341, 374, 404, 455
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse9I	AATT	1 cut(s)	202
SspI	AATATT	1 cut(s)	34
StyD4I	CCNGG	1 cut(s)	217
StyI	CCWWGG	3 cut(s)	174, 272, 402
TasI	AATT	1 cut(s)	202
TfiI	GAWTC	2 cut(s)	59, 248
Tru1I	TTAA	3 cut(s)	11, 266, 473
Tru9I	TTAA	3 cut(s)	11, 266, 473
TscAI	CASTG	2 cut(s)	127, 246
TseI	GCWGC	1 cut(s)	296
TspDTI	ATGAA	6 cut(s)	14, 245, 279, 331, 381, 399
TspGWI	ACGGA	1 cut(s)	128
TspRI	CASTG	2 cut(s)	127, 246
XapI	RAATTY	1 cut(s)	202
XcmI	CCANNNNNNNNNTGG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.