Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009261

Physical Location & Seq

Genomic Coordinates Forward (+)

12772438 .. 12775889

Gene Structure 3452 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g14560.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGAAAAGGAAGATCATGGATCAGAGTAAAGGGTCAGAGATTAGATCTGCCATTGAAGAACTGTCGGTCATGGTTAAAGTTATAGGTGTAATAACACTACTCCAAGCTGAAAATGGTGATCATGATGCTGCTGCGTTCAATATCAGTCATGAGGCTGCTCATATTCCCACTAGGCCCTTTCTTTCTCTTTGCTACTTCCTTCTTCAAGTTCTCGATAAAATAGGACCAACAATGGCTGTTCTGAGACAAGATATTCATCAGAACATTCGGAGATTGGAAACGAGGCACGAAGCTGATCCTTCAACATATTCAAACATGGTTGAGGTATTGAAAACAGAAGCAACGGACGGCACTGCAAGAAATATTACAAGTTGTAGTAGAGCTTTCGTTTGGCTCACCAGATCCTTGGATTTTACGGCAGAGTTATTGAAACATTTAGCAGTAAACCCAGGGCAGAACATGAAGGAGGCAGTGGAAGAATCTTACAACCTCACTCTAAAGCCATGGCACAGATGGATTTCATCAGCTGCTTCTAAAGTAGCACTAATGTTAGTGCCTGACAATGAGACCTTCATTAGCAGCCTCATGGCCAAAGATGAAAGCTATGACAACTTGAAAGTTGAAATGGAAACCTTGGTTTCATTACTTGTGCCTTATCTTGAACAGATCCACTCCATTCTGAGGTTTTATCACTTGGACAAGTTAAAGGCCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0006869 GO:0008150 GO:0008289 GO:0010876 GO:0012505 GO:0017089 GO:0031974 GO:0031981 GO:0031984 GO:0032365 GO:0033036 GO:0033218 GO:0035091 GO:0035621 GO:0035627 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046625 GO:0046836 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051861 GO:0070013 GO:0070273 GO:0071702 GO:0071705 GO:0097001 GO:0097367 GO:0098791 GO:1901264 GO:1901981

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTP

Protein Analysis

239

Amino Acids

27.0

Weight (kDa)

6.14

Isoelectric Point (pI)

53.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GLTP	PF08718	55 - 196	7.2e-39	Glycolipid transfer protein (GLTP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21360 AT1G21360 AT1G21360 AT3G21260 AT3G21260 AT3G21260
fragaria_vesca	FvH4_2g14560
malus_domestica	MD05G1017200.v1.1 MD10G1017400.v1.1
prunus_persica	Prupe.8G021000_v2.0.a1
pyrus_communis	pycom10g01110
rosa_chinensis	RchiOBHm_Chr6g0276911
rosa_laevigata	RLG00000013355
rosa_multiflora	Rmu_sc0001425.1_g000018 Rmu_sc0003882.1_g000009
rosa_roxburghii	Rroxscaffold_7G00191800
rosa_rugosa	Rorug06G0104900
rosa_samantha	Rh6AG214800 Rh6BG219700 Rh6CG222300 Rh6DG212500
rosa_wichuraiana	Rw6G018790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	27, 290, 396, 661
AcoI	YGGCCR	1 cut(s)	588
AfiI	CCNNNNNNNGG	1 cut(s)	681
AjnI	CCWGG	1 cut(s)	448
AluBI	AGCT	5 cut(s)	107, 293, 383, 527, 603
AluI	AGCT	5 cut(s)	107, 293, 383, 527, 603
Alw26I	GTCTC	2 cut(s)	238, 560
AlwI	GGATC	4 cut(s)	27, 290, 396, 661
AoxI	GGCC	3 cut(s)	173, 588, 708
ApeKI	GCWGC	5 cut(s)	128, 131, 155, 527, 579
AspS9I	GGNCC	2 cut(s)	174, 224
AsuHPI	GGTGA	2 cut(s)	128, 388
AvaII	GGWCC	1 cut(s)	224
BalI	TGGCCA	1 cut(s)	590
BbvI	GCAGC	5 cut(s)	115, 118, 142, 514, 591
BccI	CCATC	1 cut(s)	507
BceAI	ACGGC	2 cut(s)	364, 432
BciT130I	CCWGG	1 cut(s)	450
BclI	TGATCA	1 cut(s)	118
BcoDI	GTCTC	2 cut(s)	238, 560
BfaI	CTAG	1 cut(s)	171
BglII	AGATCT	1 cut(s)	44
BisI	GCNGC	5 cut(s)	129, 132, 156, 528, 580
BlsI	GCNGC	5 cut(s)	130, 133, 157, 529, 581
Bme1390I	CCNGG	1 cut(s)	450
Bme18I	GGWCC	1 cut(s)	224
BmgT120I	GGNCC	2 cut(s)	174, 224
BmrFI	CCNGG	1 cut(s)	450
BmsI	GCATC	1 cut(s)	115
BsaBI	GATNNNNATC	1 cut(s)	255
BsaI	GGTCTC	1 cut(s)	560
BsaJI	CCNNGG	5 cut(s)	405, 448, 449, 503, 633
Bsc4I	CCNNNNNNNGG	1 cut(s)	681
Bse8I	GATNNNNATC	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	450
BseDI	CCNNGG	5 cut(s)	405, 448, 449, 503, 633
BseJI	GATNNNNATC	1 cut(s)	255
BseLI	CCNNNNNNNGG	1 cut(s)	681
BseMII	CTCAG	2 cut(s)	233, 671
BseXI	GCAGC	5 cut(s)	115, 118, 142, 514, 591
BshFI	GGCC	3 cut(s)	175, 590, 710
BslI	CCNNNNNNNGG	1 cut(s)	681
BsmAI	GTCTC	2 cut(s)	238, 560
BsnI	GGCC	3 cut(s)	175, 590, 710
Bso31I	GGTCTC	1 cut(s)	560
Bsp143I	GATC	7 cut(s)	12, 19, 44, 118, 295, 401, 666
Bsp19I	CCATGG	1 cut(s)	503
BspANI	GGCC	3 cut(s)	175, 590, 710
BspCNI	CTCAG	2 cut(s)	234, 672
BspHI	TCATGA	2 cut(s)	121, 148
BspPI	GGATC	4 cut(s)	27, 290, 396, 661
BspTNI	GGTCTC	1 cut(s)	560
BssECI	CCNNGG	5 cut(s)	405, 448, 449, 503, 633
BssMI	GATC	7 cut(s)	12, 19, 44, 118, 295, 401, 666
BssT1I	CCWWGG	3 cut(s)	405, 503, 633
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	1 cut(s)	63
BstDEI	CTNAG	2 cut(s)	242, 680
BstDSI	CCRYGG	1 cut(s)	503
BstKTI	GATC	7 cut(s)	15, 22, 47, 121, 298, 404, 669
BstMAI	GTCTC	2 cut(s)	238, 560
BstMBI	GATC	7 cut(s)	12, 19, 44, 118, 295, 401, 666
BstNI	CCWGG	1 cut(s)	450
BstSCI	CCNGG	1 cut(s)	448
BstV1I	GCAGC	5 cut(s)	115, 118, 142, 514, 591
BstX2I	RGATCY	3 cut(s)	44, 401, 666
BstXI	CCANNNNNNTGG	1 cut(s)	406
BstYI	RGATCY	3 cut(s)	44, 401, 666
BsuRI	GGCC	3 cut(s)	175, 590, 710
BtgI	CCRYGG	1 cut(s)	503
BtsI	GCAGTG	2 cut(s)	351, 477
BtsIMutI	CAGTG	2 cut(s)	351, 477
CciI	TCATGA	2 cut(s)	121, 148
Cfr13I	GGNCC	2 cut(s)	174, 224
CviAII	CATG	8 cut(s)	16, 70, 122, 149, 316, 460, 504, 586
DdeI	CTNAG	2 cut(s)	242, 680
DpnI	GATC	7 cut(s)	14, 21, 46, 120, 297, 403, 668
DpnII	GATC	7 cut(s)	12, 19, 44, 118, 295, 401, 666
EaeI	YGGCCR	1 cut(s)	588
Eco130I	CCWWGG	3 cut(s)	405, 503, 633
Eco31I	GGTCTC	1 cut(s)	560
Eco47I	GGWCC	1 cut(s)	224
EcoO109I	RGGNCCY	1 cut(s)	174
EcoRII	CCWGG	1 cut(s)	448
EcoT14I	CCWWGG	3 cut(s)	405, 503, 633
ErhI	CCWWGG	3 cut(s)	405, 503, 633
FaeI	CATG	8 cut(s)	19, 73, 125, 152, 319, 463, 507, 589
FatI	CATG	8 cut(s)	15, 69, 121, 148, 315, 459, 503, 585
FbaI	TGATCA	1 cut(s)	118
Fnu4HI	GCNGC	5 cut(s)	129, 132, 156, 528, 580
Fsp4HI	GCNGC	5 cut(s)	129, 132, 156, 528, 580
FspBI	CTAG	1 cut(s)	171
GluI	GCNGC	5 cut(s)	129, 132, 156, 528, 580
HaeIII	GGCC	3 cut(s)	175, 590, 710
Hin1II	CATG	8 cut(s)	19, 73, 125, 152, 319, 463, 507, 589
HinfI	GANTC	1 cut(s)	479
HphI	GGTGA	2 cut(s)	128, 388
Hpy166II	GTNNAC	1 cut(s)	445
Hpy188I	TCNGA	6 cut(s)	24, 37, 243, 261, 270, 681
Hpy188III	TCNNGA	4 cut(s)	122, 149, 212, 659
Hpy8I	GTNNAC	1 cut(s)	445
HpyAV	CCTTC	4 cut(s)	209, 309, 457, 580
HpyCH4III	ACNGT	1 cut(s)	63
HpyCH4V	TGCA	1 cut(s)	356
HpyF3I	CTNAG	2 cut(s)	242, 680
Hsp92II	CATG	8 cut(s)	19, 73, 125, 152, 319, 463, 507, 589
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	7 cut(s)	12, 19, 44, 118, 295, 401, 666
LpnPI	CCDG	4 cut(s)	412, 435, 462, 570
Lsp1109I	GCAGC	5 cut(s)	115, 118, 142, 514, 591
LweI	GCATC	1 cut(s)	115
MaeI	CTAG	1 cut(s)	171
MalI	GATC	7 cut(s)	14, 21, 46, 120, 297, 403, 668
MboI	GATC	7 cut(s)	12, 19, 44, 118, 295, 401, 666
MboII	GAAGA	4 cut(s)	22, 68, 194, 488
MflI	RGATCY	3 cut(s)	44, 401, 666
MlsI	TGGCCA	1 cut(s)	590
MluNI	TGGCCA	1 cut(s)	590
MnlI	CCTC	7 cut(s)	145, 276, 316, 460, 500, 593, 675
Mox20I	TGGCCA	1 cut(s)	590
MscI	TGGCCA	1 cut(s)	590
MseI	TTAA	2 cut(s)	75, 704
Msp20I	TGGCCA	1 cut(s)	590
MspA1I	CMGCKG	1 cut(s)	527
MspR9I	CCNGG	1 cut(s)	450
MvaI	CCWGG	1 cut(s)	450
NcoI	CCATGG	1 cut(s)	503
NdeII	GATC	7 cut(s)	12, 19, 44, 118, 295, 401, 666
NlaIII	CATG	8 cut(s)	19, 73, 125, 152, 319, 463, 507, 589
PagI	TCATGA	2 cut(s)	121, 148
PasI	CCCWGGG	1 cut(s)	449
PfeI	GAWTC	1 cut(s)	479
PkrI	GCNGC	5 cut(s)	130, 133, 157, 529, 581
Psp6I	CCWGG	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	448
PspPI	GGNCC	2 cut(s)	174, 224
PsuI	RGATCY	3 cut(s)	44, 401, 666
PvuII	CAGCTG	1 cut(s)	527
SaqAI	TTAA	2 cut(s)	75, 704
SatI	GCNGC	5 cut(s)	129, 132, 156, 528, 580
Sau3AI	GATC	7 cut(s)	12, 19, 44, 118, 295, 401, 666
Sau96I	GGNCC	2 cut(s)	174, 224
ScrFI	CCNGG	1 cut(s)	450
SfaNI	GCATC	1 cut(s)	115
SinI	GGWCC	1 cut(s)	224
SspI	AATATT	1 cut(s)	364
SspMI	CTAG	1 cut(s)	171
StyD4I	CCNGG	1 cut(s)	448
StyI	CCWWGG	3 cut(s)	405, 503, 633
TaaI	ACNGT	1 cut(s)	63
TaqI	TCGA	1 cut(s)	213
TaqII	GACCGA	1 cut(s)	55
TfiI	GAWTC	1 cut(s)	479
Tru1I	TTAA	2 cut(s)	75, 704
Tru9I	TTAA	2 cut(s)	75, 704
TscAI	CASTG	2 cut(s)	358, 477
TseI	GCWGC	5 cut(s)	128, 131, 155, 527, 579
TspDTI	ATGAA	7 cut(s)	17, 245, 476, 510, 562, 612, 630
TspGWI	ACGGA	1 cut(s)	359
TspRI	CASTG	2 cut(s)	358, 477
VpaK11BI	GGWCC	1 cut(s)	224
XcmI	CCANNNNNNNNNTGG	2 cut(s)	110, 510
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.