Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0009261

Physical Location & Seq

Genomic Coordinates Forward (+)

37882865 .. 37886213

Gene Structure 3349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG212500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGTTGTCATCAACAGTACTATATATAAAAGTGACAAATGGGGTTACATTACATAGAAAGTATCTTCCTCAACAAGAATATCATAGTCATTATCCACATTTATGCAATCATAGAAGCTTAGCTAGCTCTATCTCTATCCAAAGAATGAAAAGGAAGATAATGGATCAGAGTAAAGGGTCAGAGATTAGATCTGCCATTGAAGAACTCTCGGTCATGGTTAAAGTTATAGGTGTAATAACACTCCAAGCGGAAAATGGTGATCACGATGCTCATGATGCTGCGTTTATCAATCATGAGGCTGCTCATATTCCCACCGGGCCCTTTCTTTCTCTTTGCTACTCGCTTCTTCGAGTTCTCGATAAAATAGGACCAACGATGGCTGTTTTAAGACAAGATGTTCATCAGAATATTCGGAGATTGGAAACGAGGAACGAATCTGATCCTTCAGCATATTCAAATATGGTTGAGATATTGAAAACAGAAGCCACGGACGGCACTGCAAGAAATCTTACAAGTTGTAGTAGAGCCTTCGTTTGGCTCACCAGATCCTTGGATTTTACGGCAGAGCTATTGCAAAATTTAGCAGGAAACCCAGGGCAGAACATGAAGCAGGCAGTGGAAGAATCTTACAACCTCACTTTAAAGCCATGGCATAGATGGATTTCATCAGCTGCTTCTAAAGTACATCACTTTCTTCTTTCTTCTTTCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0006869 GO:0008150 GO:0008289 GO:0010876 GO:0012505 GO:0017089 GO:0031974 GO:0031981 GO:0031984 GO:0032365 GO:0033036 GO:0033218 GO:0035091 GO:0035621 GO:0035627 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046625 GO:0046836 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051861 GO:0070013 GO:0070273 GO:0071702 GO:0071705 GO:0097001 GO:0097367 GO:0098791 GO:1901264 GO:1901981

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTP

Protein Analysis

237

Amino Acids

26.8

Weight (kDa)

8.75

Isoelectric Point (pI)

51.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GLTP	PF08718	103 - 230	1.6e-34	Glycolipid transfer protein (GLTP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21360 AT1G21360 AT1G21360 AT3G21260 AT3G21260 AT3G21260
fragaria_vesca	FvH4_2g14560
malus_domestica	MD05G1017200.v1.1 MD10G1017400.v1.1
prunus_persica	Prupe.8G021000_v2.0.a1
pyrus_communis	pycom10g01110
rosa_chinensis	RchiOBHm_Chr6g0276911
rosa_laevigata	RLG00000013355
rosa_multiflora	Rmu_sc0001425.1_g000018 Rmu_sc0003882.1_g000009
rosa_roxburghii	Rroxscaffold_7G00191800
rosa_rugosa	Rorug06G0104900
rosa_samantha	Rh6AG214800 Rh6BG219700 Rh6CG222300 Rh6DG212500
rosa_wichuraiana	Rw6G018790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	248
AclWI	GGATC	3 cut(s)	171, 434, 540
AcsI	RAATTY	1 cut(s)	577
AcuI	CTGAAG	1 cut(s)	429
AfaI	GTAC	2 cut(s)	18, 684
AfiI	CCNNNNNNNGG	1 cut(s)	534
AgsI	TTSAA	3 cut(s)	200, 456, 475
AjnI	CCWGG	1 cut(s)	592
AluBI	AGCT	5 cut(s)	117, 122, 126, 568, 671
AluI	AGCT	5 cut(s)	117, 122, 126, 568, 671
AlwI	GGATC	3 cut(s)	171, 434, 540
AoxI	GGCC	1 cut(s)	317
ApaI	GGGCCC	1 cut(s)	321
ApeKI	GCWGC	3 cut(s)	278, 299, 671
ApoI	RAATTY	1 cut(s)	577
AspS9I	GGNCC	3 cut(s)	317, 318, 368
AsuC2I	CCSGG	1 cut(s)	316
AsuHPI	GGTGA	2 cut(s)	269, 532
AsuNHI	GCTAGC	1 cut(s)	122
AvaII	GGWCC	1 cut(s)	368
BaeGI	GKGCMC	1 cut(s)	321
BanII	GRGCYC	1 cut(s)	321
BbvI	GCAGC	3 cut(s)	265, 286, 658
BccI	CCATC	2 cut(s)	370, 651
BceAI	ACGGC	2 cut(s)	508, 576
BciT130I	CCWGG	1 cut(s)	594
BclI	TGATCA	1 cut(s)	259
BcnI	CCSGG	1 cut(s)	316
BfaI	CTAG	1 cut(s)	123
BglII	AGATCT	1 cut(s)	188
BisI	GCNGC	3 cut(s)	279, 300, 672
BlpI	GCTNAGC	1 cut(s)	118
BlsI	GCNGC	3 cut(s)	280, 301, 673
BmcAI	AGTACT	1 cut(s)	18
Bme1390I	CCNGG	2 cut(s)	316, 594
Bme18I	GGWCC	1 cut(s)	368
BmgT120I	GGNCC	3 cut(s)	317, 318, 368
BmiI	GGNNCC	1 cut(s)	319
BmrFI	CCNGG	2 cut(s)	316, 594
BmsI	GCATC	2 cut(s)	256, 265
BmtI	GCTAGC	1 cut(s)	126
Bpu1102I	GCTNAGC	1 cut(s)	118
BpuMI	CCSGG	1 cut(s)	316
BsaBI	GATNNNNATC	1 cut(s)	399
BsaJI	CCNNGG	5 cut(s)	486, 549, 592, 593, 647
Bsc4I	CCNNNNNNNGG	1 cut(s)	534
Bse8I	GATNNNNATC	1 cut(s)	399
BseBI	CCWGG	1 cut(s)	594
BseDI	CCNNGG	5 cut(s)	486, 549, 592, 593, 647
BseJI	GATNNNNATC	1 cut(s)	399
BseLI	CCNNNNNNNGG	1 cut(s)	534
BseSI	GKGCMC	1 cut(s)	321
BseXI	GCAGC	3 cut(s)	265, 286, 658
BshFI	GGCC	1 cut(s)	319
BsiSI	CCGG	1 cut(s)	315
BslI	CCNNNNNNNGG	1 cut(s)	534
BsnI	GGCC	1 cut(s)	319
Bsp120I	GGGCCC	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp143I	GATC	5 cut(s)	163, 188, 259, 439, 545
Bsp1720I	GCTNAGC	1 cut(s)	118
Bsp19I	CCATGG	1 cut(s)	647
BspACI	CCGC	1 cut(s)	248
BspANI	GGCC	1 cut(s)	319
BspHI	TCATGA	2 cut(s)	271, 292
BspLI	GGNNCC	1 cut(s)	319
BspOI	GCTAGC	1 cut(s)	126
BspPI	GGATC	3 cut(s)	171, 434, 540
BssECI	CCNNGG	5 cut(s)	486, 549, 592, 593, 647
BssMI	GATC	5 cut(s)	163, 188, 259, 439, 545
BssT1I	CCWWGG	2 cut(s)	549, 647
Bst2UI	CCWGG	1 cut(s)	594
Bst4CI	ACNGT	1 cut(s)	16
BstC8I	GCNNGC	2 cut(s)	124, 612
BstDEI	CTNAG	1 cut(s)	118
BstDSI	CCRYGG	2 cut(s)	486, 647
BstKTI	GATC	5 cut(s)	166, 191, 262, 442, 548
BstMBI	GATC	5 cut(s)	163, 188, 259, 439, 545
BstMWI	GCNNNNNNNGC	2 cut(s)	123, 275
BstNI	CCWGG	1 cut(s)	594
BstSCI	CCNGG	2 cut(s)	314, 592
BstSLI	GKGCMC	1 cut(s)	321
BstV1I	GCAGC	3 cut(s)	265, 286, 658
BstX2I	RGATCY	2 cut(s)	188, 545
BstXI	CCANNNNNNTGG	1 cut(s)	550
BstYI	RGATCY	2 cut(s)	188, 545
BsuRI	GGCC	1 cut(s)	319
BtgI	CCRYGG	2 cut(s)	486, 647
BtsI	GCAGTG	2 cut(s)	495, 621
BtsIMutI	CAGTG	2 cut(s)	495, 621
Cac8I	GCNNGC	2 cut(s)	124, 612
CciI	TCATGA	2 cut(s)	271, 292
Cfr13I	GGNCC	3 cut(s)	317, 318, 368
Csp6I	GTAC	2 cut(s)	17, 683
CviAII	CATG	5 cut(s)	214, 272, 293, 604, 648
CviQI	GTAC	2 cut(s)	17, 683
DdeI	CTNAG	1 cut(s)	118
DpnI	GATC	5 cut(s)	165, 190, 261, 441, 547
DpnII	GATC	5 cut(s)	163, 188, 259, 439, 545
DraI	TTTAAA	1 cut(s)	642
Eco130I	CCWWGG	2 cut(s)	549, 647
Eco24I	GRGCYC	1 cut(s)	321
Eco47I	GGWCC	1 cut(s)	368
Eco57I	CTGAAG	1 cut(s)	429
EcoO109I	RGGNCCY	1 cut(s)	318
EcoRII	CCWGG	1 cut(s)	592
EcoT14I	CCWWGG	2 cut(s)	549, 647
EcoT38I	GRGCYC	1 cut(s)	321
ErhI	CCWWGG	2 cut(s)	549, 647
FaeI	CATG	5 cut(s)	217, 275, 296, 607, 651
FatI	CATG	5 cut(s)	213, 271, 292, 603, 647
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	3 cut(s)	279, 300, 672
FriOI	GRGCYC	1 cut(s)	321
Fsp4HI	GCNGC	3 cut(s)	279, 300, 672
FspBI	CTAG	1 cut(s)	123
GluI	GCNGC	3 cut(s)	279, 300, 672
HaeIII	GGCC	1 cut(s)	319
HapII	CCGG	1 cut(s)	315
Hin1II	CATG	5 cut(s)	217, 275, 296, 607, 651
HindIII	AAGCTT	1 cut(s)	115
HinfI	GANTC	2 cut(s)	434, 623
HpaII	CCGG	1 cut(s)	315
HphI	GGTGA	2 cut(s)	269, 532
Hpy188I	TCNGA	5 cut(s)	168, 181, 405, 414, 439
Hpy188III	TCNNGA	4 cut(s)	263, 272, 293, 356
HpyAV	CCTTC	2 cut(s)	453, 538
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4V	TGCA	3 cut(s)	105, 500, 574
HpyF10VI	GCNNNNNNNGC	2 cut(s)	123, 275
HpyF3I	CTNAG	1 cut(s)	118
Hsp92II	CATG	5 cut(s)	217, 275, 296, 607, 651
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	5 cut(s)	163, 188, 259, 439, 545
LpnPI	CCDG	6 cut(s)	328, 556, 570, 579, 596, 606
Lsp1109I	GCAGC	3 cut(s)	265, 286, 658
LweI	GCATC	2 cut(s)	256, 265
MaeI	CTAG	1 cut(s)	123
MaeIII	GTNAC	2 cut(s)	31, 43
MalI	GATC	5 cut(s)	165, 190, 261, 441, 547
MboI	GATC	5 cut(s)	163, 188, 259, 439, 545
MboII	GAAGA	7 cut(s)	56, 166, 212, 338, 632, 686, 693
MflI	RGATCY	2 cut(s)	188, 545
MhlI	GDGCHC	1 cut(s)	321
MluCI	AATT	1 cut(s)	577
MnlI	CCTC	4 cut(s)	78, 289, 420, 644
MseI	TTAA	4 cut(s)	219, 386, 641, 712
MslI	CAYNNNNRTG	1 cut(s)	100
MspA1I	CMGCKG	1 cut(s)	671
MspI	CCGG	1 cut(s)	315
MspR9I	CCNGG	2 cut(s)	316, 594
MvaI	CCWGG	1 cut(s)	594
MwoI	GCNNNNNNNGC	2 cut(s)	123, 275
NciI	CCSGG	1 cut(s)	316
NcoI	CCATGG	1 cut(s)	647
NdeII	GATC	5 cut(s)	163, 188, 259, 439, 545
NheI	GCTAGC	1 cut(s)	122
NlaIII	CATG	5 cut(s)	217, 275, 296, 607, 651
NlaIV	GGNNCC	1 cut(s)	319
NmuCI	GTSAC	1 cut(s)	31
PagI	TCATGA	2 cut(s)	271, 292
PasI	CCCWGGG	1 cut(s)	593
PfeI	GAWTC	2 cut(s)	434, 623
PkrI	GCNGC	3 cut(s)	280, 301, 673
Psp6I	CCWGG	1 cut(s)	592
PspGI	CCWGG	1 cut(s)	592
PspN4I	GGNNCC	1 cut(s)	319
PspOMI	GGGCCC	1 cut(s)	317
PspPI	GGNCC	3 cut(s)	317, 318, 368
PsuI	RGATCY	2 cut(s)	188, 545
PvuII	CAGCTG	1 cut(s)	671
RsaI	GTAC	2 cut(s)	18, 684
RsaNI	GTAC	2 cut(s)	17, 683
RseI	CAYNNNNRTG	1 cut(s)	100
SaqAI	TTAA	4 cut(s)	219, 386, 641, 712
SatI	GCNGC	3 cut(s)	279, 300, 672
Sau3AI	GATC	5 cut(s)	163, 188, 259, 439, 545
Sau96I	GGNCC	3 cut(s)	317, 318, 368
ScaI	AGTACT	1 cut(s)	18
ScrFI	CCNGG	2 cut(s)	316, 594
SduI	GDGCHC	1 cut(s)	321
SetI	ASST	7 cut(s)	119, 124, 128, 232, 570, 636, 673
SfaNI	GCATC	2 cut(s)	256, 265
SinI	GGWCC	1 cut(s)	368
SmiMI	CAYNNNNRTG	1 cut(s)	100
Sse9I	AATT	1 cut(s)	577
SsiI	CCGC	1 cut(s)	248
SspI	AATATT	1 cut(s)	409
SspMI	CTAG	1 cut(s)	123
StyD4I	CCNGG	2 cut(s)	314, 592
StyI	CCWWGG	2 cut(s)	549, 647
TaaI	ACNGT	1 cut(s)	16
TaqI	TCGA	2 cut(s)	349, 357
TaqII	GACCGA	1 cut(s)	199
TasI	AATT	1 cut(s)	577
TatI	WGTACW	2 cut(s)	16, 682
TfiI	GAWTC	2 cut(s)	434, 623
Tru1I	TTAA	4 cut(s)	219, 386, 641, 712
Tru9I	TTAA	4 cut(s)	219, 386, 641, 712
TscAI	CASTG	2 cut(s)	502, 621
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	3 cut(s)	278, 299, 671
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	4 cut(s)	161, 389, 620, 654
TspGWI	ACGGA	1 cut(s)	503
TspRI	CASTG	2 cut(s)	502, 621
VpaK11BI	GGWCC	1 cut(s)	368
XapI	RAATTY	1 cut(s)	577
XcmI	CCANNNNNNNNNTGG	2 cut(s)	251, 654
XspI	CTAG	1 cut(s)	123
ZrmI	AGTACT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.