Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0009261

Physical Location & Seq

Genomic Coordinates Reverse (-)

2222333 .. 2226283

Gene Structure 3951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1017400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGAAAAGGAAGTTAATGGATCAGAATATGGGATCAGAGATTAGATGTGCCATTGAAGAACTCTCCGTTATGGTCAAGGTTAAAGGTGCTATATTGGTCCCAGCGGCTGAACATGGTGGTGGTGATCATGCTCACGAGGCTGCTCATATTCCCACCAGGCCTTTTCTTTCTCTCTGCAGCTTGCTTCTTCAAGTTCTTGATAAAATAGGACCTACAATGGCTGTTCTAAGCCAAGATATTCATCAAAATATTCGGAGATTGGAAACGAAACATGAATCAGATCTTTCGACATATTCAAATATGGTTGAGATGTTGAAAAATGAGGCGACTGAAGGCATTGCTAGAAACGTTACCAGTTGTAGTAGAGCCTTTGTTTGGCTTACCAGATCCCTAGATTTTACCGTGGCCTTGTTGCAAAATTTAGTGAGAGATCCCGGGCAGAATATGCAGCAGGCAGTGGAAGAGTCTTATAACATTACTTTGAAGCCATGGCATAGGTGGATTTCATCAGCTGCTTCTAAAGTAGCCCTAATGCTAGTGCCTGACAATGAAACATTCATTAGTAGCCTCATGGCAAAAGATGAAAACTATGACAACTTGAAACTGGAAATAGAGAACTTGGTTTCCTTACTCGTGCCTTATCTGGAAGAAATCCACTCGATTCTGGTTAAAGATTTTATCACTTGGATAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0006869 GO:0008150 GO:0008289 GO:0010876 GO:0012505 GO:0017089 GO:0031974 GO:0031981 GO:0031984 GO:0032365 GO:0033036 GO:0033218 GO:0035091 GO:0035621 GO:0035627 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046625 GO:0046836 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051861 GO:0070013 GO:0070273 GO:0071702 GO:0071705 GO:0097001 GO:0097367 GO:0098791 GO:1901264 GO:1901981

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTP

Protein Analysis

232

Amino Acids

26.0

Weight (kDa)

5.61

Isoelectric Point (pI)

51.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GLTP	PF08718	50 - 191	2.9e-41	Glycolipid transfer protein (GLTP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21360 AT1G21360 AT1G21360 AT3G21260 AT3G21260 AT3G21260
fragaria_vesca	FvH4_2g14560
malus_domestica	MD05G1017200.v1.1 MD10G1017400.v1.1
prunus_persica	Prupe.8G021000_v2.0.a1
pyrus_communis	pycom10g01110
rosa_chinensis	RchiOBHm_Chr6g0276911
rosa_laevigata	RLG00000013355
rosa_multiflora	Rmu_sc0001425.1_g000018 Rmu_sc0003882.1_g000009
rosa_roxburghii	Rroxscaffold_7G00191800
rosa_rugosa	Rorug06G0104900
rosa_samantha	Rh6AG214800 Rh6BG219700 Rh6CG222300 Rh6DG212500
rosa_wichuraiana	Rw6G018790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	471
AciI	CCGC	1 cut(s)	104
AclI	AACGTT	1 cut(s)	348
AclWI	GGATC	4 cut(s)	27, 40, 381, 425
AcsI	RAATTY	1 cut(s)	418
AcuI	CTGAAG	1 cut(s)	351
AfiI	CCNNNNNNNGG	1 cut(s)	375
AgsI	TTSAA	6 cut(s)	56, 191, 297, 316, 484, 601
AjnI	CCWGG	1 cut(s)	155
AloI	GAACNNNNNNTCC	2 cut(s)	608, 640
AluBI	AGCT	2 cut(s)	180, 512
AluI	AGCT	2 cut(s)	180, 512
AlwI	GGATC	4 cut(s)	27, 40, 381, 425
AlwNI	CAGNNNCTG	1 cut(s)	107
Ama87I	CYCGRG	1 cut(s)	434
AoxI	GGCC	2 cut(s)	158, 405
ApeKI	GCWGC	4 cut(s)	140, 177, 448, 512
ApoI	RAATTY	1 cut(s)	418
AspS9I	GGNCC	2 cut(s)	97, 209
AsuC2I	CCSGG	2 cut(s)	435, 436
AsuHPI	GGTGA	1 cut(s)	134
AvaI	CYCGRG	1 cut(s)	434
AvaII	GGWCC	2 cut(s)	97, 209
BauI	CACGAG	2 cut(s)	134, 632
BbvI	GCAGC	4 cut(s)	127, 189, 460, 499
BciT130I	CCWGG	1 cut(s)	157
BclI	TGATCA	1 cut(s)	124
BcnI	CCSGG	2 cut(s)	435, 436
BfaI	CTAG	3 cut(s)	342, 392, 536
BfmI	CTRYAG	1 cut(s)	175
BglII	AGATCT	1 cut(s)	280
BisI	GCNGC	5 cut(s)	105, 141, 178, 449, 513
BlsI	GCNGC	5 cut(s)	106, 142, 179, 450, 514
Bme1390I	CCNGG	3 cut(s)	157, 435, 436
Bme18I	GGWCC	2 cut(s)	97, 209
BmeT110I	CYCGRG	1 cut(s)	434
BmgT120I	GGNCC	2 cut(s)	97, 209
BmiI	GGNNCC	1 cut(s)	99
BmrFI	CCNGG	3 cut(s)	157, 435, 436
BpuMI	CCSGG	2 cut(s)	435, 436
BsaBI	GATNNNNATC	1 cut(s)	240
BsaJI	CCNNGG	3 cut(s)	402, 434, 488
Bsc4I	CCNNNNNNNGG	1 cut(s)	375
Bse1I	ACTGG	2 cut(s)	354, 609
Bse3DI	GCAATG	1 cut(s)	336
Bse8I	GATNNNNATC	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	157
BseDI	CCNNGG	3 cut(s)	402, 434, 488
BseJI	GATNNNNATC	1 cut(s)	240
BseLI	CCNNNNNNNGG	1 cut(s)	375
BseMI	GCAATG	1 cut(s)	336
BseNI	ACTGG	2 cut(s)	354, 609
BseXI	GCAGC	4 cut(s)	127, 189, 460, 499
BseYI	CCCAGC	1 cut(s)	100
BshFI	GGCC	2 cut(s)	160, 407
BsiHKCI	CYCGRG	1 cut(s)	434
BsiSI	CCGG	1 cut(s)	435
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	375
BsmFI	GGGAC	1 cut(s)	83
BsnI	GGCC	2 cut(s)	160, 407
BsoBI	CYCGRG	1 cut(s)	434
Bsp143I	GATC	6 cut(s)	19, 32, 124, 280, 386, 430
Bsp19I	CCATGG	1 cut(s)	488
BspACI	CCGC	1 cut(s)	104
BspANI	GGCC	2 cut(s)	160, 407
BspLI	GGNNCC	1 cut(s)	99
BspMAI	CTGCAG	1 cut(s)	179
BspPI	GGATC	4 cut(s)	27, 40, 381, 425
BsrDI	GCAATG	1 cut(s)	336
BsrI	ACTGG	2 cut(s)	354, 609
BssECI	CCNNGG	3 cut(s)	402, 434, 488
BssMI	GATC	6 cut(s)	19, 32, 124, 280, 386, 430
BssSI	CACGAG	2 cut(s)	134, 632
BssT1I	CCWWGG	1 cut(s)	488
Bst2BI	CACGAG	2 cut(s)	134, 632
Bst2UI	CCWGG	1 cut(s)	157
Bst4CI	ACNGT	1 cut(s)	403
Bst6I	CTCTTC	1 cut(s)	456
BstAPI	GCANNNNNTGC	1 cut(s)	445
BstC8I	GCNNGC	2 cut(s)	182, 453
BstDEI	CTNAG	1 cut(s)	227
BstDSI	CCRYGG	2 cut(s)	402, 488
BstKTI	GATC	6 cut(s)	22, 35, 127, 283, 389, 433
BstMBI	GATC	6 cut(s)	19, 32, 124, 280, 386, 430
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 445
BstNI	CCWGG	1 cut(s)	157
BstSCI	CCNGG	3 cut(s)	155, 433, 434
BstSFI	CTRYAG	1 cut(s)	175
BstV1I	GCAGC	4 cut(s)	127, 189, 460, 499
BstX2I	RGATCY	3 cut(s)	280, 386, 430
BstYI	RGATCY	3 cut(s)	280, 386, 430
BsuRI	GGCC	2 cut(s)	160, 407
BtgI	CCRYGG	2 cut(s)	402, 488
BtsI	GCAGTG	1 cut(s)	462
BtsIMutI	CAGTG	1 cut(s)	462
Cac8I	GCNNGC	2 cut(s)	182, 453
CaiI	CAGNNNCTG	1 cut(s)	107
Cfr13I	GGNCC	2 cut(s)	97, 209
Cfr9I	CCCGGG	1 cut(s)	434
CviAII	CATG	5 cut(s)	113, 128, 272, 489, 571
DdeI	CTNAG	1 cut(s)	227
DpnI	GATC	6 cut(s)	21, 34, 126, 282, 388, 432
DpnII	GATC	6 cut(s)	19, 32, 124, 280, 386, 430
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
Eco130I	CCWWGG	1 cut(s)	488
Eco147I	AGGCCT	1 cut(s)	160
Eco47I	GGWCC	2 cut(s)	97, 209
Eco57I	CTGAAG	1 cut(s)	351
Eco88I	CYCGRG	1 cut(s)	434
EcoO109I	RGGNCCY	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	155
EcoT14I	CCWWGG	1 cut(s)	488
ErhI	CCWWGG	1 cut(s)	488
FaeI	CATG	5 cut(s)	116, 131, 275, 492, 574
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	5 cut(s)	112, 127, 271, 488, 570
FbaI	TGATCA	1 cut(s)	124
Fnu4HI	GCNGC	5 cut(s)	105, 141, 178, 449, 513
Fsp4HI	GCNGC	5 cut(s)	105, 141, 178, 449, 513
FspBI	CTAG	3 cut(s)	342, 392, 536
GluI	GCNGC	5 cut(s)	105, 141, 178, 449, 513
GsaI	CCCAGC	1 cut(s)	104
HaeIII	GGCC	2 cut(s)	160, 407
HapII	CCGG	1 cut(s)	435
Hin1II	CATG	5 cut(s)	116, 131, 275, 492, 574
HinfI	GANTC	3 cut(s)	275, 464, 661
HpaII	CCGG	1 cut(s)	435
HphI	GGTGA	1 cut(s)	134
Hpy188I	TCNGA	4 cut(s)	24, 37, 255, 280
Hpy188III	TCNNGA	3 cut(s)	134, 197, 644
HpyAV	CCTTC	1 cut(s)	326
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	3 cut(s)	177, 415, 448
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 445
HpyF3I	CTNAG	1 cut(s)	227
HpySE526I	ACGT	1 cut(s)	348
Hsp92II	CATG	5 cut(s)	116, 131, 275, 492, 574
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	6 cut(s)	19, 32, 124, 280, 386, 430
Lsp1109I	GCAGC	4 cut(s)	127, 189, 460, 499
MaeI	CTAG	3 cut(s)	342, 392, 536
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	6 cut(s)	21, 34, 126, 282, 388, 432
MboI	GATC	6 cut(s)	19, 32, 124, 280, 386, 430
MboII	GAAGA	4 cut(s)	68, 179, 473, 659
MflI	RGATCY	3 cut(s)	280, 386, 430
MluCI	AATT	1 cut(s)	418
MlyI	GAGTC	1 cut(s)	473
MnlI	CCTC	3 cut(s)	130, 316, 578
MseI	TTAA	3 cut(s)	14, 81, 669
MslI	CAYNNNNRTG	1 cut(s)	117
MspA1I	CMGCKG	2 cut(s)	104, 512
MspI	CCGG	1 cut(s)	435
MspR9I	CCNGG	3 cut(s)	157, 435, 436
MvaI	CCWGG	1 cut(s)	157
MwoI	GCNNNNNNNGC	2 cut(s)	137, 445
NciI	CCSGG	2 cut(s)	435, 436
NcoI	CCATGG	1 cut(s)	488
NdeII	GATC	6 cut(s)	19, 32, 124, 280, 386, 430
NlaIII	CATG	5 cut(s)	116, 131, 275, 492, 574
NlaIV	GGNNCC	1 cut(s)	99
PceI	AGGCCT	1 cut(s)	160
PfeI	GAWTC	2 cut(s)	275, 661
PkrI	GCNGC	5 cut(s)	106, 142, 179, 450, 514
PleI	GAGTC	1 cut(s)	472
PpsI	GAGTC	1 cut(s)	472
PpuMI	RGGWCCY	1 cut(s)	209
PsiI	TTATAA	1 cut(s)	471
Psp1406I	AACGTT	1 cut(s)	348
Psp5II	RGGWCCY	1 cut(s)	209
Psp6I	CCWGG	1 cut(s)	155
PspFI	CCCAGC	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	155
PspN4I	GGNNCC	1 cut(s)	99
PspPI	GGNCC	2 cut(s)	97, 209
PspPPI	RGGWCCY	1 cut(s)	209
PstI	CTGCAG	1 cut(s)	179
PstNI	CAGNNNCTG	1 cut(s)	107
PsuI	RGATCY	3 cut(s)	280, 386, 430
PvuII	CAGCTG	1 cut(s)	512
RseI	CAYNNNNRTG	1 cut(s)	117
SaqAI	TTAA	3 cut(s)	14, 81, 669
SatI	GCNGC	5 cut(s)	105, 141, 178, 449, 513
Sau3AI	GATC	6 cut(s)	19, 32, 124, 280, 386, 430
Sau96I	GGNCC	2 cut(s)	97, 209
SchI	GAGTC	1 cut(s)	473
ScrFI	CCNGG	3 cut(s)	157, 435, 436
SetI	ASST	8 cut(s)	81, 88, 182, 214, 351, 500, 514, 694
SfcI	CTRYAG	1 cut(s)	175
SinI	GGWCC	2 cut(s)	97, 209
SmaI	CCCGGG	1 cut(s)	436
SmiMI	CAYNNNNRTG	1 cut(s)	117
Sse9I	AATT	1 cut(s)	418
SseBI	AGGCCT	1 cut(s)	160
SsiI	CCGC	1 cut(s)	104
SspI	AATATT	1 cut(s)	250
SspMI	CTAG	3 cut(s)	342, 392, 536
StuI	AGGCCT	1 cut(s)	160
StyD4I	CCNGG	3 cut(s)	155, 433, 434
StyI	CCWWGG	1 cut(s)	488
TaaI	ACNGT	1 cut(s)	403
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	2 cut(s)	287, 659
TasI	AATT	1 cut(s)	418
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	2 cut(s)	275, 661
Tru1I	TTAA	3 cut(s)	14, 81, 669
Tru9I	TTAA	3 cut(s)	14, 81, 669
TscAI	CASTG	1 cut(s)	462
TseI	GCWGC	4 cut(s)	140, 177, 448, 512
TspDTI	ATGAA	7 cut(s)	17, 230, 288, 495, 547, 564, 597
TspGWI	ACGGA	1 cut(s)	55
TspMI	CCCGGG	1 cut(s)	434
TspRI	CASTG	1 cut(s)	462
VpaK11BI	GGWCC	2 cut(s)	97, 209
XapI	RAATTY	1 cut(s)	418
XcmI	CCANNNNNNNNNTGG	1 cut(s)	495
XmaI	CCCGGG	1 cut(s)	434
XspI	CTAG	3 cut(s)	342, 392, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.