Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0009261

Physical Location & Seq

Genomic Coordinates Reverse (-)

30222451 .. 30225140

Gene Structure 2690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013355

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGAAAAGGAAGATAATGGATCAGAGTAAAGGGTCAGAGATTAGATCTGCCATTGAAGAACTCTCGGTCATGGTTAAAGTTATAGGTGTAATAACACTCCAAGCTGAAAATGGTGATCATGATGCTGCGTTTATCAATCATGAGGCTGCTCATATTCCCACCGGGCCCTTTCTTTCTCTTTGCTACTCGCTTCTTCGAGTTCTCGATAAAATAGGACCAACGATGGCTGTTTTAAGACAAGATGTTCATCAGAATATTCGGAGATTGGAAACGAGGAACGAATCTGATCCTTCAGCATATTCAAATATGGTTGAGATATTGAAAACAGAAGCCACGGACGGCACTGCAAGAAATCTTACAAGTTGTAGTAGAGCCTTCGTTTGGCTCACCAGATCCTTGGATTTTACGGCAGAGCTATTGCGAAATTTAGCAGGAAACCCAGGGCAGAACATGAAGCAGGCAGTGGAAGAATCTTACAACCTCACTTTAAAGCCATGGCATAGATGGATTTCATCAGCTGCTTCTAAAGTAGCTCTAATGTTAGTGCCTGACAATGAGACCTTCATTAGTAGTCTCATGGCCAAAGATGAAAGCTATGACAACTTGAAAGTTGAAATGGAAACCTTGGTTTCATTACTTCTGCCTTATCTTGAGCAGATCCACTCCATCCTGAGGTTTTATCACTTGGACAAGTTAAAGGCTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0006869 GO:0008150 GO:0008289 GO:0010876 GO:0012505 GO:0017089 GO:0031974 GO:0031981 GO:0031984 GO:0032365 GO:0033036 GO:0033218 GO:0035091 GO:0035621 GO:0035627 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046625 GO:0046836 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051861 GO:0070013 GO:0070273 GO:0071702 GO:0071705 GO:0097001 GO:0097367 GO:0098791 GO:1901264 GO:1901981

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTP

Protein Analysis

236

Amino Acids

26.53

Weight (kDa)

6.17

Isoelectric Point (pI)

52.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GLTP	PF08718	52 - 193	2.4e-39	Glycolipid transfer protein (GLTP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21360 AT1G21360 AT1G21360 AT3G21260 AT3G21260 AT3G21260
fragaria_vesca	FvH4_2g14560
malus_domestica	MD05G1017200.v1.1 MD10G1017400.v1.1
prunus_persica	Prupe.8G021000_v2.0.a1
pyrus_communis	pycom10g01110
rosa_chinensis	RchiOBHm_Chr6g0276911
rosa_laevigata	RLG00000013355
rosa_multiflora	Rmu_sc0001425.1_g000018 Rmu_sc0003882.1_g000009
rosa_roxburghii	Rroxscaffold_7G00191800
rosa_rugosa	Rorug06G0104900
rosa_samantha	Rh6AG214800 Rh6BG219700 Rh6CG222300 Rh6DG212500
rosa_wichuraiana	Rw6G018790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	27, 281, 387, 652
AcoI	YGGCCR	1 cut(s)	579
AcsI	RAATTY	1 cut(s)	424
AcuI	CTGAAG	1 cut(s)	276
AfiI	CCNNNNNNNGG	2 cut(s)	381, 672
AgsI	TTSAA	5 cut(s)	56, 303, 322, 607, 614
AjnI	CCWGG	1 cut(s)	439
AluBI	AGCT	5 cut(s)	104, 415, 518, 533, 594
AluI	AGCT	5 cut(s)	104, 415, 518, 533, 594
Alw26I	GTCTC	2 cut(s)	551, 578
AlwI	GGATC	4 cut(s)	27, 281, 387, 652
AoxI	GGCC	2 cut(s)	164, 579
ApaI	GGGCCC	1 cut(s)	168
ApeKI	GCWGC	3 cut(s)	125, 146, 518
ApoI	RAATTY	1 cut(s)	424
AspS9I	GGNCC	3 cut(s)	164, 165, 215
AsuC2I	CCSGG	1 cut(s)	163
AsuHPI	GGTGA	2 cut(s)	125, 379
AvaII	GGWCC	1 cut(s)	215
AxyI	CCTNAGG	1 cut(s)	671
BaeGI	GKGCMC	1 cut(s)	168
BalI	TGGCCA	1 cut(s)	581
BanII	GRGCYC	1 cut(s)	168
BbvI	GCAGC	3 cut(s)	112, 133, 505
BccI	CCATC	3 cut(s)	217, 498, 674
BceAI	ACGGC	2 cut(s)	355, 423
BciT130I	CCWGG	1 cut(s)	441
BclI	TGATCA	1 cut(s)	115
BcnI	CCSGG	1 cut(s)	163
BcoDI	GTCTC	2 cut(s)	551, 578
BglII	AGATCT	1 cut(s)	44
BisI	GCNGC	3 cut(s)	126, 147, 519
BlsI	GCNGC	3 cut(s)	127, 148, 520
Bme1390I	CCNGG	2 cut(s)	163, 441
Bme18I	GGWCC	1 cut(s)	215
BmgT120I	GGNCC	3 cut(s)	164, 165, 215
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	2 cut(s)	163, 441
BmsI	GCATC	1 cut(s)	112
BpuEI	CTTGAG	1 cut(s)	671
BpuMI	CCSGG	1 cut(s)	163
BsaBI	GATNNNNATC	1 cut(s)	246
BsaI	GGTCTC	1 cut(s)	551
BsaJI	CCNNGG	6 cut(s)	333, 396, 439, 440, 494, 624
Bsc4I	CCNNNNNNNGG	2 cut(s)	381, 672
Bse21I	CCTNAGG	1 cut(s)	671
Bse8I	GATNNNNATC	1 cut(s)	246
BseBI	CCWGG	1 cut(s)	441
BseDI	CCNNGG	6 cut(s)	333, 396, 439, 440, 494, 624
BseGI	GGATG	1 cut(s)	666
BseJI	GATNNNNATC	1 cut(s)	246
BseLI	CCNNNNNNNGG	2 cut(s)	381, 672
BseMII	CTCAG	1 cut(s)	662
BseSI	GKGCMC	1 cut(s)	168
BseXI	GCAGC	3 cut(s)	112, 133, 505
BshFI	GGCC	2 cut(s)	166, 581
BsiSI	CCGG	1 cut(s)	162
BslI	CCNNNNNNNGG	2 cut(s)	381, 672
BsmAI	GTCTC	2 cut(s)	551, 578
BsnI	GGCC	2 cut(s)	166, 581
Bso31I	GGTCTC	1 cut(s)	551
Bsp120I	GGGCCC	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	6 cut(s)	19, 44, 115, 286, 392, 657
Bsp19I	CCATGG	1 cut(s)	494
BspANI	GGCC	2 cut(s)	166, 581
BspCNI	CTCAG	1 cut(s)	663
BspHI	TCATGA	2 cut(s)	118, 139
BspLI	GGNNCC	1 cut(s)	166
BspPI	GGATC	4 cut(s)	27, 281, 387, 652
BspTNI	GGTCTC	1 cut(s)	551
BssECI	CCNNGG	6 cut(s)	333, 396, 439, 440, 494, 624
BssMI	GATC	6 cut(s)	19, 44, 115, 286, 392, 657
BssT1I	CCWWGG	3 cut(s)	396, 494, 624
Bst2UI	CCWGG	1 cut(s)	441
BstC8I	GCNNGC	1 cut(s)	459
BstDEI	CTNAG	1 cut(s)	671
BstDSI	CCRYGG	2 cut(s)	333, 494
BstF5I	GGATG	1 cut(s)	666
BstKTI	GATC	6 cut(s)	22, 47, 118, 289, 395, 660
BstMAI	GTCTC	2 cut(s)	551, 578
BstMBI	GATC	6 cut(s)	19, 44, 115, 286, 392, 657
BstNI	CCWGG	1 cut(s)	441
BstSCI	CCNGG	2 cut(s)	161, 439
BstSLI	GKGCMC	1 cut(s)	168
BstV1I	GCAGC	3 cut(s)	112, 133, 505
BstX2I	RGATCY	3 cut(s)	44, 392, 657
BstXI	CCANNNNNNTGG	1 cut(s)	397
BstYI	RGATCY	3 cut(s)	44, 392, 657
Bsu36I	CCTNAGG	1 cut(s)	671
BsuRI	GGCC	2 cut(s)	166, 581
BtgI	CCRYGG	2 cut(s)	333, 494
BtsCI	GGATG	1 cut(s)	666
BtsI	GCAGTG	2 cut(s)	342, 468
BtsIMutI	CAGTG	2 cut(s)	342, 468
Cac8I	GCNNGC	1 cut(s)	459
CciI	TCATGA	2 cut(s)	118, 139
Cfr13I	GGNCC	3 cut(s)	164, 165, 215
CviAII	CATG	6 cut(s)	70, 119, 140, 451, 495, 577
DdeI	CTNAG	1 cut(s)	671
DpnI	GATC	6 cut(s)	21, 46, 117, 288, 394, 659
DpnII	GATC	6 cut(s)	19, 44, 115, 286, 392, 657
DraI	TTTAAA	1 cut(s)	489
EaeI	YGGCCR	1 cut(s)	579
Eco130I	CCWWGG	3 cut(s)	396, 494, 624
Eco24I	GRGCYC	1 cut(s)	168
Eco31I	GGTCTC	1 cut(s)	551
Eco47I	GGWCC	1 cut(s)	215
Eco57I	CTGAAG	1 cut(s)	276
Eco81I	CCTNAGG	1 cut(s)	671
EcoO109I	RGGNCCY	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	439
EcoT14I	CCWWGG	3 cut(s)	396, 494, 624
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	3 cut(s)	396, 494, 624
FaeI	CATG	6 cut(s)	73, 122, 143, 454, 498, 580
FatI	CATG	6 cut(s)	69, 118, 139, 450, 494, 576
FbaI	TGATCA	1 cut(s)	115
Fnu4HI	GCNGC	3 cut(s)	126, 147, 519
FokI	GGATG	1 cut(s)	653
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	3 cut(s)	126, 147, 519
GluI	GCNGC	3 cut(s)	126, 147, 519
HaeIII	GGCC	2 cut(s)	166, 581
HapII	CCGG	1 cut(s)	162
Hin1II	CATG	6 cut(s)	73, 122, 143, 454, 498, 580
HinfI	GANTC	2 cut(s)	281, 470
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	2 cut(s)	125, 379
Hpy188I	TCNGA	5 cut(s)	24, 37, 252, 261, 286
Hpy188III	TCNNGA	5 cut(s)	119, 140, 203, 650, 670
HpyAV	CCTTC	3 cut(s)	300, 385, 571
HpyCH4V	TGCA	1 cut(s)	347
HpyF3I	CTNAG	1 cut(s)	671
Hsp92II	CATG	6 cut(s)	73, 122, 143, 454, 498, 580
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	6 cut(s)	19, 44, 115, 286, 392, 657
LpnPI	CCDG	8 cut(s)	175, 403, 417, 426, 443, 453, 561, 683
Lsp1109I	GCAGC	3 cut(s)	112, 133, 505
LweI	GCATC	1 cut(s)	112
MalI	GATC	6 cut(s)	21, 46, 117, 288, 394, 659
MboI	GATC	6 cut(s)	19, 44, 115, 286, 392, 657
MboII	GAAGA	4 cut(s)	22, 68, 185, 479
MflI	RGATCY	3 cut(s)	44, 392, 657
MhlI	GDGCHC	1 cut(s)	168
MlsI	TGGCCA	1 cut(s)	581
MluCI	AATT	1 cut(s)	424
MluNI	TGGCCA	1 cut(s)	581
MnlI	CCTC	4 cut(s)	136, 267, 491, 666
Mox20I	TGGCCA	1 cut(s)	581
MscI	TGGCCA	1 cut(s)	581
MseI	TTAA	4 cut(s)	75, 233, 488, 695
Msp20I	TGGCCA	1 cut(s)	581
MspA1I	CMGCKG	1 cut(s)	518
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	2 cut(s)	163, 441
MvaI	CCWGG	1 cut(s)	441
NciI	CCSGG	1 cut(s)	163
NcoI	CCATGG	1 cut(s)	494
NdeII	GATC	6 cut(s)	19, 44, 115, 286, 392, 657
NlaIII	CATG	6 cut(s)	73, 122, 143, 454, 498, 580
NlaIV	GGNNCC	1 cut(s)	166
PagI	TCATGA	2 cut(s)	118, 139
PasI	CCCWGGG	1 cut(s)	440
PfeI	GAWTC	2 cut(s)	281, 470
PkrI	GCNGC	3 cut(s)	127, 148, 520
Psp6I	CCWGG	1 cut(s)	439
PspGI	CCWGG	1 cut(s)	439
PspN4I	GGNNCC	1 cut(s)	166
PspOMI	GGGCCC	1 cut(s)	164
PspPI	GGNCC	3 cut(s)	164, 165, 215
PsuI	RGATCY	3 cut(s)	44, 392, 657
PvuII	CAGCTG	1 cut(s)	518
SaqAI	TTAA	4 cut(s)	75, 233, 488, 695
SatI	GCNGC	3 cut(s)	126, 147, 519
Sau3AI	GATC	6 cut(s)	19, 44, 115, 286, 392, 657
Sau96I	GGNCC	3 cut(s)	164, 165, 215
ScrFI	CCNGG	2 cut(s)	163, 441
SduI	GDGCHC	1 cut(s)	168
SfaNI	GCATC	1 cut(s)	112
SinI	GGWCC	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	650
SmoI	CTYRAG	1 cut(s)	650
Sse9I	AATT	1 cut(s)	424
SspI	AATATT	1 cut(s)	256
StyD4I	CCNGG	2 cut(s)	161, 439
StyI	CCWWGG	3 cut(s)	396, 494, 624
TaqI	TCGA	2 cut(s)	196, 204
TaqII	GACCGA	1 cut(s)	55
TasI	AATT	1 cut(s)	424
TfiI	GAWTC	2 cut(s)	281, 470
Tru1I	TTAA	4 cut(s)	75, 233, 488, 695
Tru9I	TTAA	4 cut(s)	75, 233, 488, 695
TscAI	CASTG	2 cut(s)	349, 468
TseI	GCWGC	3 cut(s)	125, 146, 518
TspDTI	ATGAA	7 cut(s)	17, 236, 467, 501, 553, 603, 621
TspGWI	ACGGA	1 cut(s)	350
TspRI	CASTG	2 cut(s)	349, 468
VpaK11BI	GGWCC	1 cut(s)	215
XapI	RAATTY	1 cut(s)	424
XcmI	CCANNNNNNNNNTGG	2 cut(s)	107, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.