Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0009261

Physical Location & Seq

Genomic Coordinates Forward (+)

41440271 .. 41443012

Gene Structure 2742 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG219700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGTTGTCATCAACAGTACTATATATAAAAGGGACAAATGGGGTTACATTACATAGAAAGTATCTTCCTCAACAAGAATATCATAGTCATTATCCACATTTATGCAATCATAGAAGCTTAGCTAGCTCTATCTCTATCCAAAGAATGAAAAGGAAGATAATGGATCAGAGTAAAGGGTCAGAGATTAGATCTGCCATTGAAGAACTCTCGGTCATGGTTAAAGTTATAGGTGTAAAAACACTCCAAGCTGAAAATGGTGATCATGATGCTCATGATGCTGCGTTTATCAATCATGAGGCTGCTCATATTCCCACCGGGCCCTTTCTTTCTCTTTGCTACTCGCTTCTTCGAGTTCTCGATAAAATAGGACCAACGATGGCTGTTTTAAGACAAGATGTTCATCAGAATATTCGGAGATTGGAAACGAGGAACGAATCTGATCCTTCAGCATATTCAAATATGGTTGAGATATTGAAAACAGAAGCCACGGACGGCACTGCAAGAAATCTTACAAGTTGTAGTAGAGCCTTCGTTTGGCTCACCAGATCCTTGGATTTTACGGCAGAGCTATTGCAAAATTTAGCAGGAAACCCAGGGCAGAACATGAAGCAGGCAGTGGAAGAATCTTACAACCTCACTTTAAAGCCATGGCATAGATGGATTTCATCAGCTGCTTCGAAAGTAGCTCTAATGTTAGTGCCTGACAATGAGACCTTCATTAGTAGTCTCATGGCCAAAGATGAAAGCTATGACAACTTGAAAGTTGAAATGGAAACCTTGGTTTCATTACTTCTGCCTTATCTTGAGCAGATCCACTCCATCCTGAGGTTTTATCACTTGGACAAGTTAAAGGCTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0006869 GO:0008150 GO:0008289 GO:0010876 GO:0012505 GO:0017089 GO:0031974 GO:0031981 GO:0031984 GO:0032365 GO:0033036 GO:0033218 GO:0035091 GO:0035621 GO:0035627 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046625 GO:0046836 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051861 GO:0070013 GO:0070273 GO:0071702 GO:0071705 GO:0097001 GO:0097367 GO:0098791 GO:1901264 GO:1901981

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTP

Protein Analysis

286

Amino Acids

32.39

Weight (kDa)

7.23

Isoelectric Point (pI)

50.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GLTP	PF08718	103 - 244	2.6e-39	Glycolipid transfer protein (GLTP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21360 AT1G21360 AT1G21360 AT3G21260 AT3G21260 AT3G21260
fragaria_vesca	FvH4_2g14560
malus_domestica	MD05G1017200.v1.1 MD10G1017400.v1.1
prunus_persica	Prupe.8G021000_v2.0.a1
pyrus_communis	pycom10g01110
rosa_chinensis	RchiOBHm_Chr6g0276911
rosa_laevigata	RLG00000013355
rosa_multiflora	Rmu_sc0001425.1_g000018 Rmu_sc0003882.1_g000009
rosa_roxburghii	Rroxscaffold_7G00191800
rosa_rugosa	Rorug06G0104900
rosa_samantha	Rh6AG214800 Rh6BG219700 Rh6CG222300 Rh6DG212500
rosa_wichuraiana	Rw6G018790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	171, 434, 540, 805
AcoI	YGGCCR	1 cut(s)	732
AcsI	RAATTY	1 cut(s)	577
AcuI	CTGAAG	1 cut(s)	429
AfaI	GTAC	1 cut(s)	18
AfiI	CCNNNNNNNGG	2 cut(s)	534, 825
AgsI	TTSAA	5 cut(s)	200, 456, 475, 760, 767
AjnI	CCWGG	1 cut(s)	592
AluBI	AGCT	8 cut(s)	117, 122, 126, 248, 568, 671, 686, 747
AluI	AGCT	8 cut(s)	117, 122, 126, 248, 568, 671, 686, 747
Alw26I	GTCTC	2 cut(s)	704, 731
AlwI	GGATC	4 cut(s)	171, 434, 540, 805
AoxI	GGCC	2 cut(s)	317, 732
ApaI	GGGCCC	1 cut(s)	321
ApeKI	GCWGC	3 cut(s)	278, 299, 671
ApoI	RAATTY	1 cut(s)	577
AspS9I	GGNCC	3 cut(s)	317, 318, 368
AsuC2I	CCSGG	1 cut(s)	316
AsuHPI	GGTGA	2 cut(s)	269, 532
AsuII	TTCGAA	1 cut(s)	677
AsuNHI	GCTAGC	1 cut(s)	122
AvaII	GGWCC	1 cut(s)	368
AxyI	CCTNAGG	1 cut(s)	824
BaeGI	GKGCMC	1 cut(s)	321
BalI	TGGCCA	1 cut(s)	734
BanII	GRGCYC	1 cut(s)	321
BbvI	GCAGC	3 cut(s)	265, 286, 658
BccI	CCATC	3 cut(s)	370, 651, 827
BceAI	ACGGC	2 cut(s)	508, 576
BciT130I	CCWGG	1 cut(s)	594
BclI	TGATCA	1 cut(s)	259
BcnI	CCSGG	1 cut(s)	316
BcoDI	GTCTC	2 cut(s)	704, 731
BfaI	CTAG	1 cut(s)	123
BglII	AGATCT	1 cut(s)	188
BisI	GCNGC	3 cut(s)	279, 300, 672
BlpI	GCTNAGC	1 cut(s)	118
BlsI	GCNGC	3 cut(s)	280, 301, 673
BmcAI	AGTACT	1 cut(s)	18
Bme1390I	CCNGG	2 cut(s)	316, 594
Bme18I	GGWCC	1 cut(s)	368
BmgT120I	GGNCC	3 cut(s)	317, 318, 368
BmiI	GGNNCC	1 cut(s)	319
BmrFI	CCNGG	2 cut(s)	316, 594
BmsI	GCATC	2 cut(s)	256, 265
BmtI	GCTAGC	1 cut(s)	126
Bpu1102I	GCTNAGC	1 cut(s)	118
Bpu14I	TTCGAA	1 cut(s)	677
BpuEI	CTTGAG	1 cut(s)	824
BpuMI	CCSGG	1 cut(s)	316
BsaBI	GATNNNNATC	1 cut(s)	399
BsaI	GGTCTC	1 cut(s)	704
BsaJI	CCNNGG	6 cut(s)	486, 549, 592, 593, 647, 777
Bsc4I	CCNNNNNNNGG	2 cut(s)	534, 825
Bse21I	CCTNAGG	1 cut(s)	824
Bse8I	GATNNNNATC	1 cut(s)	399
BseBI	CCWGG	1 cut(s)	594
BseDI	CCNNGG	6 cut(s)	486, 549, 592, 593, 647, 777
BseGI	GGATG	1 cut(s)	819
BseJI	GATNNNNATC	1 cut(s)	399
BseLI	CCNNNNNNNGG	2 cut(s)	534, 825
BseMII	CTCAG	1 cut(s)	815
BseSI	GKGCMC	1 cut(s)	321
BseXI	GCAGC	3 cut(s)	265, 286, 658
BshFI	GGCC	2 cut(s)	319, 734
BsiSI	CCGG	1 cut(s)	315
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	2 cut(s)	534, 825
BsmAI	GTCTC	2 cut(s)	704, 731
BsmFI	GGGAC	1 cut(s)	46
BsnI	GGCC	2 cut(s)	319, 734
Bso31I	GGTCTC	1 cut(s)	704
Bsp119I	TTCGAA	1 cut(s)	677
Bsp120I	GGGCCC	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp143I	GATC	6 cut(s)	163, 188, 259, 439, 545, 810
Bsp1720I	GCTNAGC	1 cut(s)	118
Bsp19I	CCATGG	1 cut(s)	647
BspANI	GGCC	2 cut(s)	319, 734
BspCNI	CTCAG	1 cut(s)	816
BspHI	TCATGA	3 cut(s)	262, 271, 292
BspLI	GGNNCC	1 cut(s)	319
BspOI	GCTAGC	1 cut(s)	126
BspPI	GGATC	4 cut(s)	171, 434, 540, 805
BspT104I	TTCGAA	1 cut(s)	677
BspTNI	GGTCTC	1 cut(s)	704
BssECI	CCNNGG	6 cut(s)	486, 549, 592, 593, 647, 777
BssMI	GATC	6 cut(s)	163, 188, 259, 439, 545, 810
BssT1I	CCWWGG	3 cut(s)	549, 647, 777
Bst2UI	CCWGG	1 cut(s)	594
Bst4CI	ACNGT	1 cut(s)	16
BstBI	TTCGAA	1 cut(s)	677
BstC8I	GCNNGC	2 cut(s)	124, 612
BstDEI	CTNAG	2 cut(s)	118, 824
BstDSI	CCRYGG	2 cut(s)	486, 647
BstF5I	GGATG	1 cut(s)	819
BstKTI	GATC	6 cut(s)	166, 191, 262, 442, 548, 813
BstMAI	GTCTC	2 cut(s)	704, 731
BstMBI	GATC	6 cut(s)	163, 188, 259, 439, 545, 810
BstMWI	GCNNNNNNNGC	2 cut(s)	123, 275
BstNI	CCWGG	1 cut(s)	594
BstSCI	CCNGG	2 cut(s)	314, 592
BstSLI	GKGCMC	1 cut(s)	321
BstV1I	GCAGC	3 cut(s)	265, 286, 658
BstX2I	RGATCY	3 cut(s)	188, 545, 810
BstXI	CCANNNNNNTGG	1 cut(s)	550
BstYI	RGATCY	3 cut(s)	188, 545, 810
Bsu36I	CCTNAGG	1 cut(s)	824
BsuRI	GGCC	2 cut(s)	319, 734
BtgI	CCRYGG	2 cut(s)	486, 647
BtsCI	GGATG	1 cut(s)	819
BtsI	GCAGTG	2 cut(s)	495, 621
BtsIMutI	CAGTG	2 cut(s)	495, 621
Cac8I	GCNNGC	2 cut(s)	124, 612
CciI	TCATGA	3 cut(s)	262, 271, 292
Cfr13I	GGNCC	3 cut(s)	317, 318, 368
Csp6I	GTAC	1 cut(s)	17
CviAII	CATG	7 cut(s)	214, 263, 272, 293, 604, 648, 730
CviQI	GTAC	1 cut(s)	17
DdeI	CTNAG	2 cut(s)	118, 824
DpnI	GATC	6 cut(s)	165, 190, 261, 441, 547, 812
DpnII	GATC	6 cut(s)	163, 188, 259, 439, 545, 810
DraI	TTTAAA	1 cut(s)	642
EaeI	YGGCCR	1 cut(s)	732
Eco130I	CCWWGG	3 cut(s)	549, 647, 777
Eco24I	GRGCYC	1 cut(s)	321
Eco31I	GGTCTC	1 cut(s)	704
Eco47I	GGWCC	1 cut(s)	368
Eco57I	CTGAAG	1 cut(s)	429
Eco81I	CCTNAGG	1 cut(s)	824
EcoO109I	RGGNCCY	1 cut(s)	318
EcoRII	CCWGG	1 cut(s)	592
EcoT14I	CCWWGG	3 cut(s)	549, 647, 777
EcoT38I	GRGCYC	1 cut(s)	321
ErhI	CCWWGG	3 cut(s)	549, 647, 777
FaeI	CATG	7 cut(s)	217, 266, 275, 296, 607, 651, 733
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	7 cut(s)	213, 262, 271, 292, 603, 647, 729
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	3 cut(s)	279, 300, 672
FokI	GGATG	1 cut(s)	806
FriOI	GRGCYC	1 cut(s)	321
Fsp4HI	GCNGC	3 cut(s)	279, 300, 672
FspBI	CTAG	1 cut(s)	123
GluI	GCNGC	3 cut(s)	279, 300, 672
HaeIII	GGCC	2 cut(s)	319, 734
HapII	CCGG	1 cut(s)	315
Hin1II	CATG	7 cut(s)	217, 266, 275, 296, 607, 651, 733
HindIII	AAGCTT	1 cut(s)	115
HinfI	GANTC	2 cut(s)	434, 623
HpaII	CCGG	1 cut(s)	315
HphI	GGTGA	2 cut(s)	269, 532
Hpy188I	TCNGA	5 cut(s)	168, 181, 405, 414, 439
Hpy188III	TCNNGA	6 cut(s)	263, 272, 293, 356, 803, 823
HpyAV	CCTTC	3 cut(s)	453, 538, 724
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4V	TGCA	3 cut(s)	105, 500, 574
HpyF10VI	GCNNNNNNNGC	2 cut(s)	123, 275
HpyF3I	CTNAG	2 cut(s)	118, 824
Hsp92II	CATG	7 cut(s)	217, 266, 275, 296, 607, 651, 733
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	6 cut(s)	163, 188, 259, 439, 545, 810
LpnPI	CCDG	8 cut(s)	328, 556, 570, 579, 596, 606, 714, 836
Lsp1109I	GCAGC	3 cut(s)	265, 286, 658
LweI	GCATC	2 cut(s)	256, 265
MaeI	CTAG	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	6 cut(s)	165, 190, 261, 441, 547, 812
MboI	GATC	6 cut(s)	163, 188, 259, 439, 545, 810
MboII	GAAGA	5 cut(s)	56, 166, 212, 338, 632
MflI	RGATCY	3 cut(s)	188, 545, 810
MhlI	GDGCHC	1 cut(s)	321
MlsI	TGGCCA	1 cut(s)	734
MluCI	AATT	1 cut(s)	577
MluNI	TGGCCA	1 cut(s)	734
MnlI	CCTC	5 cut(s)	78, 289, 420, 644, 819
Mox20I	TGGCCA	1 cut(s)	734
MscI	TGGCCA	1 cut(s)	734
MseI	TTAA	4 cut(s)	219, 386, 641, 848
MslI	CAYNNNNRTG	1 cut(s)	100
Msp20I	TGGCCA	1 cut(s)	734
MspA1I	CMGCKG	1 cut(s)	671
MspI	CCGG	1 cut(s)	315
MspR9I	CCNGG	2 cut(s)	316, 594
MvaI	CCWGG	1 cut(s)	594
MwoI	GCNNNNNNNGC	2 cut(s)	123, 275
NciI	CCSGG	1 cut(s)	316
NcoI	CCATGG	1 cut(s)	647
NdeII	GATC	6 cut(s)	163, 188, 259, 439, 545, 810
NheI	GCTAGC	1 cut(s)	122
NlaIII	CATG	7 cut(s)	217, 266, 275, 296, 607, 651, 733
NlaIV	GGNNCC	1 cut(s)	319
NspV	TTCGAA	1 cut(s)	677
PagI	TCATGA	3 cut(s)	262, 271, 292
PasI	CCCWGGG	1 cut(s)	593
PfeI	GAWTC	2 cut(s)	434, 623
PkrI	GCNGC	3 cut(s)	280, 301, 673
Psp6I	CCWGG	1 cut(s)	592
PspGI	CCWGG	1 cut(s)	592
PspN4I	GGNNCC	1 cut(s)	319
PspOMI	GGGCCC	1 cut(s)	317
PspPI	GGNCC	3 cut(s)	317, 318, 368
PsuI	RGATCY	3 cut(s)	188, 545, 810
PvuII	CAGCTG	1 cut(s)	671
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
RseI	CAYNNNNRTG	1 cut(s)	100
SaqAI	TTAA	4 cut(s)	219, 386, 641, 848
SatI	GCNGC	3 cut(s)	279, 300, 672
Sau3AI	GATC	6 cut(s)	163, 188, 259, 439, 545, 810
Sau96I	GGNCC	3 cut(s)	317, 318, 368
ScaI	AGTACT	1 cut(s)	18
ScrFI	CCNGG	2 cut(s)	316, 594
SduI	GDGCHC	1 cut(s)	321
SfaNI	GCATC	2 cut(s)	256, 265
SfuI	TTCGAA	1 cut(s)	677
SinI	GGWCC	1 cut(s)	368
SmiMI	CAYNNNNRTG	1 cut(s)	100
SmlI	CTYRAG	1 cut(s)	803
SmoI	CTYRAG	1 cut(s)	803
Sse9I	AATT	1 cut(s)	577
SspI	AATATT	1 cut(s)	409
SspMI	CTAG	1 cut(s)	123
StyD4I	CCNGG	2 cut(s)	314, 592
StyI	CCWWGG	3 cut(s)	549, 647, 777
TaaI	ACNGT	1 cut(s)	16
TaqI	TCGA	3 cut(s)	349, 357, 677
TaqII	GACCGA	1 cut(s)	199
TasI	AATT	1 cut(s)	577
TatI	WGTACW	1 cut(s)	16
TfiI	GAWTC	2 cut(s)	434, 623
Tru1I	TTAA	4 cut(s)	219, 386, 641, 848
Tru9I	TTAA	4 cut(s)	219, 386, 641, 848
TscAI	CASTG	2 cut(s)	502, 621
TseI	GCWGC	3 cut(s)	278, 299, 671
TspDTI	ATGAA	7 cut(s)	161, 389, 620, 654, 706, 756, 774
TspGWI	ACGGA	1 cut(s)	503
TspRI	CASTG	2 cut(s)	502, 621
VpaK11BI	GGWCC	1 cut(s)	368
XapI	RAATTY	1 cut(s)	577
XcmI	CCANNNNNNNNNTGG	2 cut(s)	251, 654
XspI	CTAG	1 cut(s)	123
ZrmI	AGTACT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.