Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0009261

Physical Location & Seq

Genomic Coordinates Reverse (-)

1197014 .. 1198355

Gene Structure 1342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g01110.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGTTGAGATGTTGAAAAATGAGGCGACTGAAGGCATTGCTAGAAACGTTACCAGTTGTAGTAGAGCCTTTGTTTGGCTCACCAGATCCCTAGATTTTACCGTGGCCTTGTTGCAAAATTTAGTGAGAGATCCCGGGCAGAATATGCAGCAGGCAGTGGAAGAGTCTTACAACGTTACTTTGAAGCCATGGCATAGGTGGATTTCATCAGCTGCTTCTAAAGTAGCTCTAATGCTAGTGCCTGACAATGAAACATTCATTAGTAGCCTCATGGCAAAAGATGAAAACTATGACAATTTGAAACTGGAAATAGAGACCATGGTTTCCTTACTCGTGCCTTATCTGGAAGAAATCCACTTGATTCTGAGATTTTATCACTTGGATAGGTTGAAGTCTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0006869 GO:0008150 GO:0008289 GO:0010876 GO:0012505 GO:0017089 GO:0031974 GO:0031981 GO:0031984 GO:0032365 GO:0033036 GO:0033218 GO:0035091 GO:0035621 GO:0035627 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046625 GO:0046836 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051861 GO:0070013 GO:0070273 GO:0071702 GO:0071705 GO:0097001 GO:0097367 GO:0098791 GO:1901264 GO:1901981

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTP

Protein Analysis

134

Amino Acids

15.36

Weight (kDa)

5.34

Isoelectric Point (pI)

50.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21360 AT1G21360 AT1G21360 AT3G21260 AT3G21260 AT3G21260
fragaria_vesca	FvH4_2g14560
malus_domestica	MD05G1017200.v1.1 MD10G1017400.v1.1
prunus_persica	Prupe.8G021000_v2.0.a1
pyrus_communis	pycom10g01110
rosa_chinensis	RchiOBHm_Chr6g0276911
rosa_laevigata	RLG00000013355
rosa_multiflora	Rmu_sc0001425.1_g000018 Rmu_sc0003882.1_g000009
rosa_roxburghii	Rroxscaffold_7G00191800
rosa_rugosa	Rorug06G0104900
rosa_samantha	Rh6AG214800 Rh6BG219700 Rh6CG222300 Rh6DG212500
rosa_wichuraiana	Rw6G018790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	2 cut(s)	48, 174
AclWI	GGATC	2 cut(s)	81, 125
AcsI	RAATTY	1 cut(s)	118
AcuI	CTGAAG	1 cut(s)	51
AfiI	CCNNNNNNNGG	1 cut(s)	75
AgsI	TTSAA	4 cut(s)	16, 184, 301, 391
AluBI	AGCT	2 cut(s)	212, 227
AluI	AGCT	2 cut(s)	212, 227
Alw26I	GTCTC	1 cut(s)	308
AlwI	GGATC	2 cut(s)	81, 125
Ama87I	CYCGRG	1 cut(s)	134
AoxI	GGCC	1 cut(s)	105
ApeKI	GCWGC	2 cut(s)	148, 212
ApoI	RAATTY	1 cut(s)	118
AsuC2I	CCSGG	2 cut(s)	135, 136
AsuHPI	GGTGA	1 cut(s)	73
AvaI	CYCGRG	1 cut(s)	134
BauI	CACGAG	1 cut(s)	332
BbvI	GCAGC	2 cut(s)	160, 199
BcnI	CCSGG	2 cut(s)	135, 136
BcoDI	GTCTC	1 cut(s)	308
BfaI	CTAG	3 cut(s)	42, 92, 236
BisI	GCNGC	2 cut(s)	149, 213
BlsI	GCNGC	2 cut(s)	150, 214
Bme1390I	CCNGG	2 cut(s)	135, 136
BmeT110I	CYCGRG	1 cut(s)	134
BmrFI	CCNGG	2 cut(s)	135, 136
BpuMI	CCSGG	2 cut(s)	135, 136
BsaI	GGTCTC	1 cut(s)	308
BsaJI	CCNNGG	4 cut(s)	102, 134, 188, 318
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse1I	ACTGG	2 cut(s)	54, 309
Bse3DI	GCAATG	1 cut(s)	36
BseDI	CCNNGG	4 cut(s)	102, 134, 188, 318
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	1 cut(s)	356
BseNI	ACTGG	2 cut(s)	54, 309
BseXI	GCAGC	2 cut(s)	160, 199
BshFI	GGCC	1 cut(s)	107
BsiHKCI	CYCGRG	1 cut(s)	134
BsiSI	CCGG	1 cut(s)	135
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmAI	GTCTC	1 cut(s)	308
BsnI	GGCC	1 cut(s)	107
Bso31I	GGTCTC	1 cut(s)	308
BsoBI	CYCGRG	1 cut(s)	134
Bsp143I	GATC	2 cut(s)	86, 130
Bsp19I	CCATGG	2 cut(s)	188, 318
BspANI	GGCC	1 cut(s)	107
BspCNI	CTCAG	1 cut(s)	357
BspPI	GGATC	2 cut(s)	81, 125
BspTNI	GGTCTC	1 cut(s)	308
BsrDI	GCAATG	1 cut(s)	36
BsrI	ACTGG	2 cut(s)	54, 309
BssECI	CCNNGG	4 cut(s)	102, 134, 188, 318
BssMI	GATC	2 cut(s)	86, 130
BssSI	CACGAG	1 cut(s)	332
BssT1I	CCWWGG	2 cut(s)	188, 318
Bst2BI	CACGAG	1 cut(s)	332
Bst4CI	ACNGT	1 cut(s)	103
Bst6I	CTCTTC	1 cut(s)	156
BstAPI	GCANNNNNTGC	1 cut(s)	145
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	1 cut(s)	365
BstDSI	CCRYGG	3 cut(s)	102, 188, 318
BstKTI	GATC	2 cut(s)	89, 133
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	2 cut(s)	86, 130
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstSCI	CCNGG	2 cut(s)	133, 134
BstV1I	GCAGC	2 cut(s)	160, 199
BstX2I	RGATCY	2 cut(s)	86, 130
BstYI	RGATCY	2 cut(s)	86, 130
BsuRI	GGCC	1 cut(s)	107
BtgI	CCRYGG	3 cut(s)	102, 188, 318
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	162
Cac8I	GCNNGC	1 cut(s)	153
Cfr9I	CCCGGG	1 cut(s)	134
CviAII	CATG	3 cut(s)	189, 271, 319
CviJI	RGCY	7 cut(s)	68, 79, 107, 187, 212, 227, 267
CviKI_1	RGCY	7 cut(s)	68, 79, 107, 187, 212, 227, 267
DdeI	CTNAG	1 cut(s)	365
DpnI	GATC	2 cut(s)	88, 132
DpnII	GATC	2 cut(s)	86, 130
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco130I	CCWWGG	2 cut(s)	188, 318
Eco31I	GGTCTC	1 cut(s)	308
Eco57I	CTGAAG	1 cut(s)	51
Eco88I	CYCGRG	1 cut(s)	134
EcoT14I	CCWWGG	2 cut(s)	188, 318
ErhI	CCWWGG	2 cut(s)	188, 318
FaeI	CATG	3 cut(s)	192, 274, 322
FaiI	YATR	6 cut(s)	146, 190, 195, 272, 291, 320
FatI	CATG	3 cut(s)	188, 270, 318
Fnu4HI	GCNGC	2 cut(s)	149, 213
Fsp4HI	GCNGC	2 cut(s)	149, 213
FspBI	CTAG	3 cut(s)	42, 92, 236
GluI	GCNGC	2 cut(s)	149, 213
HaeIII	GGCC	1 cut(s)	107
HapII	CCGG	1 cut(s)	135
Hin1II	CATG	3 cut(s)	192, 274, 322
HinfI	GANTC	2 cut(s)	164, 361
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	1 cut(s)	73
Hpy188I	TCNGA	1 cut(s)	366
Hpy188III	TCNNGA	1 cut(s)	344
HpyAV	CCTTC	1 cut(s)	26
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4IV	ACGT	2 cut(s)	48, 174
HpyCH4V	TGCA	2 cut(s)	115, 148
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
HpyF3I	CTNAG	1 cut(s)	365
HpySE526I	ACGT	2 cut(s)	48, 174
Hsp92II	CATG	3 cut(s)	192, 274, 322
Kzo9I	GATC	2 cut(s)	86, 130
LpnPI	CCDG	7 cut(s)	67, 97, 137, 148, 255, 290, 329
Lsp1109I	GCAGC	2 cut(s)	160, 199
MaeI	CTAG	3 cut(s)	42, 92, 236
MaeII	ACGT	2 cut(s)	48, 174
MaeIII	GTNAC	2 cut(s)	49, 175
MalI	GATC	2 cut(s)	88, 132
MboI	GATC	2 cut(s)	86, 130
MboII	GAAGA	2 cut(s)	173, 359
MflI	RGATCY	2 cut(s)	86, 130
MluCI	AATT	2 cut(s)	118, 295
MlyI	GAGTC	1 cut(s)	173
MnlI	CCTC	2 cut(s)	16, 278
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	2 cut(s)	135, 136
MwoI	GCNNNNNNNGC	1 cut(s)	145
NciI	CCSGG	2 cut(s)	135, 136
NcoI	CCATGG	2 cut(s)	188, 318
NdeII	GATC	2 cut(s)	86, 130
NlaIII	CATG	3 cut(s)	192, 274, 322
PfeI	GAWTC	1 cut(s)	361
PkrI	GCNGC	2 cut(s)	150, 214
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
Psp1406I	AACGTT	2 cut(s)	48, 174
PsuI	RGATCY	2 cut(s)	86, 130
PvuII	CAGCTG	1 cut(s)	212
SatI	GCNGC	2 cut(s)	149, 213
Sau3AI	GATC	2 cut(s)	86, 130
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	2 cut(s)	135, 136
SetI	ASST	6 cut(s)	51, 177, 200, 214, 229, 389
SmaI	CCCGGG	1 cut(s)	136
Sse9I	AATT	2 cut(s)	118, 295
SspMI	CTAG	3 cut(s)	42, 92, 236
StyD4I	CCNGG	2 cut(s)	133, 134
StyI	CCWWGG	2 cut(s)	188, 318
TaaI	ACNGT	1 cut(s)	103
TaiI	ACGT	2 cut(s)	51, 177
TasI	AATT	2 cut(s)	118, 295
TfiI	GAWTC	1 cut(s)	361
TscAI	CASTG	1 cut(s)	162
TseI	GCWGC	2 cut(s)	148, 212
TspDTI	ATGAA	4 cut(s)	195, 247, 264, 297
TspMI	CCCGGG	1 cut(s)	134
TspRI	CASTG	1 cut(s)	162
XapI	RAATTY	1 cut(s)	118
XcmI	CCANNNNNNNNNTGG	1 cut(s)	195
XmaI	CCCGGG	1 cut(s)	134
XspI	CTAG	3 cut(s)	42, 92, 236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.