Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0009261

Physical Location & Seq

Genomic Coordinates Reverse (-)

32549804 .. 32552851

Gene Structure 3048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00191800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGAAAAGGAAGATAATGGATCAGAGTAAAGGGTCAGAGATTAGATCTGCCATTGAAGAACTCTCGGTCATGGTTAAAGTTATAGGTGTAATAACACTCCAAGCTGAAAATGGTGATCATGATAAAATAGGACCAACGATGGCTGTTTTAAGACAAGATGTTCATCAGAATATTCGGAGATTGGAAACGAGGAACGAATCTGATCCTTCAGCATATTCAAATATGGTTGAGATATTGAAAACAGAAGCCACGGACGGCACTGCAAGAAATCTTACAAGTTGTAGTAGAGCCTTCGTTTGGCTCACCAGATCCTTGGATTTTACGGCAGAGTTATTGCAAAATTTAGCAGGAAACCCAGGGCAGAACATGAAGCAGGCAGTGGAAGAATCTTACAACCTCACTTTAAAGCCATGGCATAGATGGATTTCATCAGCTGCTTCTAAAGTAGCTCTAATGTTAGTGCCTGACAATGAGACCTTCATTAGTAGTCTCATGGCCAAAGATGAAAGCTATGACAACTTGAAAGTTGAAATGGAAACCTTGGTTTCATTACTTGTGCCTTATCTTGAGCAGATCCACTCCATTCTGGGGTTTTATCATTTGGACAAGTTAAAGGCTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0006869 GO:0008150 GO:0008289 GO:0010876 GO:0012505 GO:0017089 GO:0031974 GO:0031981 GO:0031984 GO:0032365 GO:0033036 GO:0033218 GO:0035091 GO:0035621 GO:0035627 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046625 GO:0046836 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051861 GO:0070013 GO:0070273 GO:0071702 GO:0071705 GO:0097001 GO:0097367 GO:0098791 GO:1901264 GO:1901981

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTP

Protein Analysis

207

Amino Acids

23.34

Weight (kDa)

5.77

Isoelectric Point (pI)

54.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GLTP	PF08718	41 - 165	3e-34	Glycolipid transfer protein (GLTP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0009261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21360 AT1G21360 AT1G21360 AT3G21260 AT3G21260 AT3G21260
fragaria_vesca	FvH4_2g14560
malus_domestica	MD05G1017200.v1.1 MD10G1017400.v1.1
prunus_persica	Prupe.8G021000_v2.0.a1
pyrus_communis	pycom10g01110
rosa_chinensis	RchiOBHm_Chr6g0276911
rosa_laevigata	RLG00000013355
rosa_multiflora	Rmu_sc0001425.1_g000018 Rmu_sc0003882.1_g000009
rosa_roxburghii	Rroxscaffold_7G00191800
rosa_rugosa	Rorug06G0104900
rosa_samantha	Rh6AG214800 Rh6BG219700 Rh6CG222300 Rh6DG212500
rosa_wichuraiana	Rw6G018790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	27, 197, 303, 568
AcoI	YGGCCR	1 cut(s)	495
AcsI	RAATTY	1 cut(s)	340
AcuI	CTGAAG	1 cut(s)	192
AfiI	CCNNNNNNNGG	2 cut(s)	297, 588
AgsI	TTSAA	5 cut(s)	56, 219, 238, 523, 530
AjnI	CCWGG	1 cut(s)	355
AluBI	AGCT	4 cut(s)	104, 434, 449, 510
AluI	AGCT	4 cut(s)	104, 434, 449, 510
Alw26I	GTCTC	2 cut(s)	467, 494
AlwI	GGATC	4 cut(s)	27, 197, 303, 568
AoxI	GGCC	1 cut(s)	495
ApeKI	GCWGC	1 cut(s)	434
ApoI	RAATTY	1 cut(s)	340
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	2 cut(s)	125, 295
AvaII	GGWCC	1 cut(s)	131
BalI	TGGCCA	1 cut(s)	497
BbvI	GCAGC	1 cut(s)	421
BccI	CCATC	2 cut(s)	133, 414
BceAI	ACGGC	2 cut(s)	271, 339
BciT130I	CCWGG	1 cut(s)	357
BclI	TGATCA	1 cut(s)	115
BcoDI	GTCTC	2 cut(s)	467, 494
BglII	AGATCT	1 cut(s)	44
BisI	GCNGC	1 cut(s)	435
BlsI	GCNGC	1 cut(s)	436
Bme1390I	CCNGG	1 cut(s)	357
Bme18I	GGWCC	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	131
BmrFI	CCNGG	1 cut(s)	357
BpuEI	CTTGAG	1 cut(s)	587
BsaBI	GATNNNNATC	1 cut(s)	162
BsaI	GGTCTC	1 cut(s)	467
BsaJI	CCNNGG	6 cut(s)	249, 312, 355, 356, 410, 540
Bsc4I	CCNNNNNNNGG	2 cut(s)	297, 588
Bse8I	GATNNNNATC	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	357
BseDI	CCNNGG	6 cut(s)	249, 312, 355, 356, 410, 540
BseJI	GATNNNNATC	1 cut(s)	162
BseLI	CCNNNNNNNGG	2 cut(s)	297, 588
BseXI	GCAGC	1 cut(s)	421
BshFI	GGCC	1 cut(s)	497
BslI	CCNNNNNNNGG	2 cut(s)	297, 588
BsmAI	GTCTC	2 cut(s)	467, 494
BsnI	GGCC	1 cut(s)	497
Bso31I	GGTCTC	1 cut(s)	467
Bsp143I	GATC	6 cut(s)	19, 44, 115, 202, 308, 573
Bsp19I	CCATGG	1 cut(s)	410
BspANI	GGCC	1 cut(s)	497
BspHI	TCATGA	1 cut(s)	118
BspPI	GGATC	4 cut(s)	27, 197, 303, 568
BspTNI	GGTCTC	1 cut(s)	467
BssECI	CCNNGG	6 cut(s)	249, 312, 355, 356, 410, 540
BssMI	GATC	6 cut(s)	19, 44, 115, 202, 308, 573
BssT1I	CCWWGG	3 cut(s)	312, 410, 540
Bst2UI	CCWGG	1 cut(s)	357
BstC8I	GCNNGC	1 cut(s)	375
BstDSI	CCRYGG	2 cut(s)	249, 410
BstKTI	GATC	6 cut(s)	22, 47, 118, 205, 311, 576
BstMAI	GTCTC	2 cut(s)	467, 494
BstMBI	GATC	6 cut(s)	19, 44, 115, 202, 308, 573
BstNI	CCWGG	1 cut(s)	357
BstSCI	CCNGG	1 cut(s)	355
BstV1I	GCAGC	1 cut(s)	421
BstX2I	RGATCY	3 cut(s)	44, 308, 573
BstXI	CCANNNNNNTGG	1 cut(s)	313
BstYI	RGATCY	3 cut(s)	44, 308, 573
BsuRI	GGCC	1 cut(s)	497
BtgI	CCRYGG	2 cut(s)	249, 410
BtsI	GCAGTG	2 cut(s)	258, 384
BtsIMutI	CAGTG	2 cut(s)	258, 384
Cac8I	GCNNGC	1 cut(s)	375
CciI	TCATGA	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	131
CviAII	CATG	5 cut(s)	70, 119, 367, 411, 493
DpnI	GATC	6 cut(s)	21, 46, 117, 204, 310, 575
DpnII	GATC	6 cut(s)	19, 44, 115, 202, 308, 573
DraI	TTTAAA	1 cut(s)	405
EaeI	YGGCCR	1 cut(s)	495
Eco130I	CCWWGG	3 cut(s)	312, 410, 540
Eco31I	GGTCTC	1 cut(s)	467
Eco47I	GGWCC	1 cut(s)	131
Eco57I	CTGAAG	1 cut(s)	192
EcoRII	CCWGG	1 cut(s)	355
EcoT14I	CCWWGG	3 cut(s)	312, 410, 540
ErhI	CCWWGG	3 cut(s)	312, 410, 540
FaeI	CATG	5 cut(s)	73, 122, 370, 414, 496
FatI	CATG	5 cut(s)	69, 118, 366, 410, 492
FbaI	TGATCA	1 cut(s)	115
Fnu4HI	GCNGC	1 cut(s)	435
Fsp4HI	GCNGC	1 cut(s)	435
GluI	GCNGC	1 cut(s)	435
HaeIII	GGCC	1 cut(s)	497
Hin1II	CATG	5 cut(s)	73, 122, 370, 414, 496
HinfI	GANTC	2 cut(s)	197, 386
HphI	GGTGA	2 cut(s)	125, 295
Hpy188I	TCNGA	5 cut(s)	24, 37, 168, 177, 202
Hpy188III	TCNNGA	2 cut(s)	119, 566
HpyAV	CCTTC	3 cut(s)	216, 301, 487
HpyCH4V	TGCA	2 cut(s)	263, 337
Hsp92II	CATG	5 cut(s)	73, 122, 370, 414, 496
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	6 cut(s)	19, 44, 115, 202, 308, 573
LpnPI	CCDG	7 cut(s)	319, 333, 342, 359, 369, 477, 572
Lsp1109I	GCAGC	1 cut(s)	421
MalI	GATC	6 cut(s)	21, 46, 117, 204, 310, 575
MboI	GATC	6 cut(s)	19, 44, 115, 202, 308, 573
MboII	GAAGA	3 cut(s)	22, 68, 395
MflI	RGATCY	3 cut(s)	44, 308, 573
MlsI	TGGCCA	1 cut(s)	497
MluCI	AATT	1 cut(s)	340
MluNI	TGGCCA	1 cut(s)	497
MnlI	CCTC	2 cut(s)	183, 407
Mox20I	TGGCCA	1 cut(s)	497
MscI	TGGCCA	1 cut(s)	497
MseI	TTAA	4 cut(s)	75, 149, 404, 611
Msp20I	TGGCCA	1 cut(s)	497
MspA1I	CMGCKG	1 cut(s)	434
MspR9I	CCNGG	1 cut(s)	357
MvaI	CCWGG	1 cut(s)	357
NcoI	CCATGG	1 cut(s)	410
NdeII	GATC	6 cut(s)	19, 44, 115, 202, 308, 573
NlaIII	CATG	5 cut(s)	73, 122, 370, 414, 496
PagI	TCATGA	1 cut(s)	118
PasI	CCCWGGG	1 cut(s)	356
PfeI	GAWTC	2 cut(s)	197, 386
PkrI	GCNGC	1 cut(s)	436
Psp6I	CCWGG	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	355
PspPI	GGNCC	1 cut(s)	131
PsuI	RGATCY	3 cut(s)	44, 308, 573
PvuII	CAGCTG	1 cut(s)	434
SaqAI	TTAA	4 cut(s)	75, 149, 404, 611
SatI	GCNGC	1 cut(s)	435
Sau3AI	GATC	6 cut(s)	19, 44, 115, 202, 308, 573
Sau96I	GGNCC	1 cut(s)	131
ScrFI	CCNGG	1 cut(s)	357
SetI	ASST	8 cut(s)	88, 106, 399, 436, 451, 479, 512, 542
SinI	GGWCC	1 cut(s)	131
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
Sse9I	AATT	1 cut(s)	340
SspI	AATATT	1 cut(s)	172
StyD4I	CCNGG	1 cut(s)	355
StyI	CCWWGG	3 cut(s)	312, 410, 540
TaqII	GACCGA	1 cut(s)	55
TasI	AATT	1 cut(s)	340
TfiI	GAWTC	2 cut(s)	197, 386
Tru1I	TTAA	4 cut(s)	75, 149, 404, 611
Tru9I	TTAA	4 cut(s)	75, 149, 404, 611
TscAI	CASTG	2 cut(s)	265, 384
TseI	GCWGC	1 cut(s)	434
TspDTI	ATGAA	7 cut(s)	17, 152, 383, 417, 469, 519, 537
TspGWI	ACGGA	1 cut(s)	266
TspRI	CASTG	2 cut(s)	265, 384
VpaK11BI	GGWCC	1 cut(s)	131
XapI	RAATTY	1 cut(s)	340
XcmI	CCANNNNNNNNNTGG	2 cut(s)	107, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.