Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0009261

Physical Location & Seq

Genomic Coordinates Reverse (-)

1895549 .. 1898093

Gene Structure 2545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G021000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGAAAAGGAAGATAATGGATCAGAATAAAGGATCAGAGATTATGTGTGCCATTGAAGAACTCTCGGCGATGGTCAAAGTTAAAAGTGCAACATTGGTCCCAGTTGCTGAACATGGTGATGTTGATGATTATGCACATGCTCGTGATGCTGCCTTTATCAATCACGAGGCTGCCCATATTCCCACAAGGCCTTTCCTTTCTCTCTGCAGCTTGCTTCTTCAAGTTCTTGATAAAATTGGACCAACAATGGCTGTTCTCAGGCAAGATATTCATCAGAATATTCGGAGACTGGAAGTGAAACATGAATCTGACCCTTCAACATATTCAAATATGGTTGAGATATTGAAAATGGAGAAGACCGAAGGCATTGCAAGAAATGTTACTAGTTCTAGTAGAGCCTTCGTTTGGCTCACCAGATCCCTTGATTTTACTGTGGCATTGTTTCAAAATTTATTAAGAGATCCTGGGAAGAATATGAAGCAGGCAGTGGAAGAGTCTTATAACCTCACTTTGAAGCCATCGCATAGATGGATTTCATCAGCTGCTTCTAAAGTAGCTCTCATGCTAGTGCCTGACAATGAAACCTTCTTTAGTAGCCTCATGGAAAAAGATGAAAACTATGACAATTTGAAAGTTGAAATTGAGACCTTTCTTTCCTTACTTGTGCCTTATCTGGAGCAGATCCACTCCATTCTGAGATTTTATAACTTGGACAAGTTGAAGTCTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0006869 GO:0008150 GO:0008289 GO:0010876 GO:0012505 GO:0017089 GO:0031974 GO:0031981 GO:0031984 GO:0032365 GO:0033036 GO:0033218 GO:0035091 GO:0035621 GO:0035627 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046625 GO:0046836 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051861 GO:0070013 GO:0070273 GO:0071702 GO:0071705 GO:0097001 GO:0097367 GO:0098791 GO:1901264 GO:1901981

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTP

Protein Analysis

244

Amino Acids

27.7

Weight (kDa)

6.25

Isoelectric Point (pI)

52.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21360 AT1G21360 AT1G21360 AT3G21260 AT3G21260 AT3G21260
fragaria_vesca	FvH4_2g14560
malus_domestica	MD05G1017200.v1.1 MD10G1017400.v1.1
prunus_persica	Prupe.8G021000_v2.0.a1
pyrus_communis	pycom10g01110
rosa_chinensis	RchiOBHm_Chr6g0276911
rosa_laevigata	RLG00000013355
rosa_multiflora	Rmu_sc0001425.1_g000018 Rmu_sc0003882.1_g000009
rosa_roxburghii	Rroxscaffold_7G00191800
rosa_rugosa	Rorug06G0104900
rosa_samantha	Rh6AG214800 Rh6BG219700 Rh6CG222300 Rh6DG212500
rosa_wichuraiana	Rw6G018790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	501, 705
AclWI	GGATC	5 cut(s)	27, 40, 411, 455, 676
AcsI	RAATTY	1 cut(s)	448
AfiI	CCNNNNNNNGG	1 cut(s)	405
AhlI	ACTAGT	1 cut(s)	383
AjnI	CCWGG	1 cut(s)	463
AluBI	AGCT	3 cut(s)	210, 542, 557
AluI	AGCT	3 cut(s)	210, 542, 557
Alw26I	GTCTC	2 cut(s)	280, 638
AlwI	GGATC	5 cut(s)	27, 40, 411, 455, 676
AlwNI	CAGNNNCTG	1 cut(s)	107
AoxI	GGCC	1 cut(s)	188
ApeKI	GCWGC	4 cut(s)	149, 170, 207, 542
ApoI	RAATTY	1 cut(s)	448
AspS9I	GGNCC	2 cut(s)	97, 239
AsuHPI	GGTGA	2 cut(s)	128, 403
AvaII	GGWCC	2 cut(s)	97, 239
BauI	CACGAG	2 cut(s)	141, 164
BbsI	GAAGAC	1 cut(s)	362
BbvI	GCAGC	4 cut(s)	136, 157, 219, 529
BccI	CCATC	3 cut(s)	64, 522, 526
BcgI	CGANNNNNNTGC	2 cut(s)	350, 384
BciT130I	CCWGG	1 cut(s)	465
BcoDI	GTCTC	2 cut(s)	280, 638
BcuI	ACTAGT	1 cut(s)	383
BfaI	CTAG	3 cut(s)	384, 390, 566
BfmI	CTRYAG	1 cut(s)	205
BisI	GCNGC	4 cut(s)	150, 171, 208, 543
BlsI	GCNGC	4 cut(s)	151, 172, 209, 544
Bme1390I	CCNGG	1 cut(s)	465
Bme18I	GGWCC	2 cut(s)	97, 239
BmgT120I	GGNCC	2 cut(s)	97, 239
BmiI	GGNNCC	1 cut(s)	99
BmrFI	CCNGG	1 cut(s)	465
BmrI	ACTGGG	1 cut(s)	95
BmsI	GCATC	1 cut(s)	136
BmuI	ACTGGG	1 cut(s)	95
BpiI	GAAGAC	1 cut(s)	362
BpmI	CTGGAG	1 cut(s)	695
BsaBI	GATNNNNATC	1 cut(s)	270
BsaI	GGTCTC	1 cut(s)	638
BsaJI	CCNNGG	1 cut(s)	464
Bsc4I	CCNNNNNNNGG	1 cut(s)	405
Bse1I	ACTGG	2 cut(s)	101, 294
Bse3DI	GCAATG	1 cut(s)	366
Bse8I	GATNNNNATC	1 cut(s)	270
BseBI	CCWGG	1 cut(s)	465
BseDI	CCNNGG	1 cut(s)	464
BseJI	GATNNNNATC	1 cut(s)	270
BseLI	CCNNNNNNNGG	1 cut(s)	405
BseMI	GCAATG	1 cut(s)	366
BseMII	CTCAG	2 cut(s)	271, 686
BseNI	ACTGG	2 cut(s)	101, 294
BseXI	GCAGC	4 cut(s)	136, 157, 219, 529
BshFI	GGCC	1 cut(s)	190
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	405
BsmAI	GTCTC	2 cut(s)	280, 638
BsmFI	GGGAC	1 cut(s)	83
BsnI	GGCC	1 cut(s)	190
Bso31I	GGTCTC	1 cut(s)	638
Bsp143I	GATC	5 cut(s)	19, 32, 416, 460, 681
BspANI	GGCC	1 cut(s)	190
BspCNI	CTCAG	2 cut(s)	270, 687
BspLI	GGNNCC	1 cut(s)	99
BspMAI	CTGCAG	1 cut(s)	209
BspPI	GGATC	5 cut(s)	27, 40, 411, 455, 676
BspTNI	GGTCTC	1 cut(s)	638
BsrDI	GCAATG	1 cut(s)	366
BsrI	ACTGG	2 cut(s)	101, 294
BssECI	CCNNGG	1 cut(s)	464
BssMI	GATC	5 cut(s)	19, 32, 416, 460, 681
BssSI	CACGAG	2 cut(s)	141, 164
Bst2BI	CACGAG	2 cut(s)	141, 164
Bst2UI	CCWGG	1 cut(s)	465
Bst4CI	ACNGT	1 cut(s)	433
Bst6I	CTCTTC	1 cut(s)	486
BstC8I	GCNNGC	2 cut(s)	212, 483
BstDEI	CTNAG	2 cut(s)	257, 695
BstKTI	GATC	5 cut(s)	22, 35, 419, 463, 684
BstMAI	GTCTC	2 cut(s)	280, 638
BstMBI	GATC	5 cut(s)	19, 32, 416, 460, 681
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstNI	CCWGG	1 cut(s)	465
BstNSI	RCATGY	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	463
BstSFI	CTRYAG	1 cut(s)	205
BstV1I	GCAGC	4 cut(s)	136, 157, 219, 529
BstV2I	GAAGAC	1 cut(s)	362
BstX2I	RGATCY	3 cut(s)	416, 460, 681
BstYI	RGATCY	3 cut(s)	416, 460, 681
BsuRI	GGCC	1 cut(s)	190
BtgZI	GCGATG	2 cut(s)	83, 504
BtsI	GCAGTG	1 cut(s)	492
BtsIMutI	CAGTG	1 cut(s)	492
Cac8I	GCNNGC	2 cut(s)	212, 483
CaiI	CAGNNNCTG	1 cut(s)	107
Cfr13I	GGNCC	2 cut(s)	97, 239
CviAII	CATG	5 cut(s)	113, 137, 302, 562, 601
DdeI	CTNAG	2 cut(s)	257, 695
DpnI	GATC	5 cut(s)	21, 34, 418, 462, 683
DpnII	GATC	5 cut(s)	19, 32, 416, 460, 681
Eam1104I	CTCTTC	1 cut(s)	486
EarI	CTCTTC	1 cut(s)	486
Eco147I	AGGCCT	1 cut(s)	190
Eco31I	GGTCTC	1 cut(s)	638
Eco47I	GGWCC	2 cut(s)	97, 239
EcoRII	CCWGG	1 cut(s)	463
FaeI	CATG	5 cut(s)	116, 140, 305, 565, 604
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	5 cut(s)	112, 136, 301, 561, 600
Fnu4HI	GCNGC	4 cut(s)	150, 171, 208, 543
Fsp4HI	GCNGC	4 cut(s)	150, 171, 208, 543
FspBI	CTAG	3 cut(s)	384, 390, 566
GluI	GCNGC	4 cut(s)	150, 171, 208, 543
GsuI	CTGGAG	1 cut(s)	695
HaeIII	GGCC	1 cut(s)	190
Hin1II	CATG	5 cut(s)	116, 140, 305, 565, 604
HinfI	GANTC	2 cut(s)	305, 494
HphI	GGTGA	2 cut(s)	128, 403
Hpy188I	TCNGA	6 cut(s)	24, 37, 276, 285, 310, 696
Hpy188III	TCNNGA	4 cut(s)	143, 164, 227, 674
HpyAV	CCTTC	4 cut(s)	324, 356, 409, 595
HpyCH4III	ACNGT	1 cut(s)	433
HpyCH4V	TGCA	4 cut(s)	89, 134, 207, 371
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	2 cut(s)	257, 695
Hsp92II	CATG	5 cut(s)	116, 140, 305, 565, 604
Kzo9I	GATC	5 cut(s)	19, 32, 416, 460, 681
LmnI	GCTCC	1 cut(s)	676
LpnPI	CCDG	9 cut(s)	114, 244, 275, 427, 450, 467, 477, 585, 659
Lsp1109I	GCAGC	4 cut(s)	136, 157, 219, 529
LweI	GCATC	1 cut(s)	136
MaeI	CTAG	3 cut(s)	384, 390, 566
MaeIII	GTNAC	1 cut(s)	379
MalI	GATC	5 cut(s)	21, 34, 418, 462, 683
MboI	GATC	5 cut(s)	19, 32, 416, 460, 681
MboII	GAAGA	6 cut(s)	22, 68, 209, 367, 481, 503
MflI	RGATCY	3 cut(s)	416, 460, 681
MluCI	AATT	4 cut(s)	234, 448, 625, 639
MlyI	GAGTC	1 cut(s)	503
MnlI	CCTC	3 cut(s)	160, 515, 608
MseI	TTAA	2 cut(s)	81, 455
MslI	CAYNNNNRTG	3 cut(s)	117, 141, 566
MspA1I	CMGCKG	1 cut(s)	542
MspR9I	CCNGG	1 cut(s)	465
MvaI	CCWGG	1 cut(s)	465
MwoI	GCNNNNNNNGC	1 cut(s)	146
NdeII	GATC	5 cut(s)	19, 32, 416, 460, 681
NlaIII	CATG	5 cut(s)	116, 140, 305, 565, 604
NlaIV	GGNNCC	1 cut(s)	99
NmeAIII	GCCGAG	1 cut(s)	44
NspI	RCATGY	1 cut(s)	140
PceI	AGGCCT	1 cut(s)	190
PfeI	GAWTC	1 cut(s)	305
PkrI	GCNGC	4 cut(s)	151, 172, 209, 544
PleI	GAGTC	1 cut(s)	502
PpsI	GAGTC	1 cut(s)	502
PsiI	TTATAA	2 cut(s)	501, 705
Psp6I	CCWGG	1 cut(s)	463
PspGI	CCWGG	1 cut(s)	463
PspN4I	GGNNCC	1 cut(s)	99
PspPI	GGNCC	2 cut(s)	97, 239
PstI	CTGCAG	1 cut(s)	209
PstNI	CAGNNNCTG	1 cut(s)	107
PsuI	RGATCY	3 cut(s)	416, 460, 681
PvuII	CAGCTG	1 cut(s)	542
RseI	CAYNNNNRTG	3 cut(s)	117, 141, 566
SaqAI	TTAA	2 cut(s)	81, 455
SatI	GCNGC	4 cut(s)	150, 171, 208, 543
Sau3AI	GATC	5 cut(s)	19, 32, 416, 460, 681
Sau96I	GGNCC	2 cut(s)	97, 239
SchI	GAGTC	1 cut(s)	503
ScrFI	CCNGG	1 cut(s)	465
SetI	ASST	6 cut(s)	212, 507, 544, 559, 587, 650
SfaNI	GCATC	1 cut(s)	136
SfcI	CTRYAG	1 cut(s)	205
SinI	GGWCC	2 cut(s)	97, 239
SmiMI	CAYNNNNRTG	3 cut(s)	117, 141, 566
SpeI	ACTAGT	1 cut(s)	383
Sse9I	AATT	4 cut(s)	234, 448, 625, 639
SseBI	AGGCCT	1 cut(s)	190
SspI	AATATT	1 cut(s)	280
SspMI	CTAG	3 cut(s)	384, 390, 566
StuI	AGGCCT	1 cut(s)	190
StyD4I	CCNGG	1 cut(s)	463
TaaI	ACNGT	1 cut(s)	433
TaqII	GACCGA	1 cut(s)	374
TasI	AATT	4 cut(s)	234, 448, 625, 639
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	2 cut(s)	81, 455
Tru9I	TTAA	2 cut(s)	81, 455
TscAI	CASTG	1 cut(s)	492
TseI	GCWGC	4 cut(s)	149, 170, 207, 542
TspDTI	ATGAA	7 cut(s)	17, 260, 318, 491, 525, 594, 627
TspRI	CASTG	1 cut(s)	492
VpaK11BI	GGWCC	2 cut(s)	97, 239
XapI	RAATTY	1 cut(s)	448
XceI	RCATGY	1 cut(s)	140
XcmI	CCANNNNNNNNNTGG	1 cut(s)	525
XspI	CTAG	3 cut(s)	384, 390, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.