Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0009261

Physical Location & Seq

Genomic Coordinates Forward (+)

37392451 .. 37395084

Gene Structure 2634 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G018790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGAAAAGGAAGATAATGGATCAGAGTAAAGGGTCAGAGATTAGATCTGCCATTGAAGAACTCTCGGTCATGGTTAAAGTTATAGGTGTAATAACACTCCAAGCTGAAAATGGTGATCATGATGCTCATCATGAGGCTGCTCATATTCCCACCGGGCCCTTTCTTTCTCTTTGCTACTCGCTTCTTCGAGTTCTCGATAAAATAGGACCAACGATGGCTGTTTTAAGACAAGATGTTCATCAGAATATTCGGAGATTGGAAACGAGGAACGAATCTGATCCTTCAGCATATTCAAATATGGTTGAGATATTGAAAACAGAAGCCACGGACGGCACTGCAAGAAATCTTACAAGTTGTAGTAGAGCCTTCGTTTGGCTCACCAGATCCTTGGATTTTACGGCAGAGCTATTGCAAAATTTAGCAGGAAACCCAGGGCAGAACATGAAGCAGGCAGTGGAAGAATCTTACAACCTCACTTTAAAGCCATGGCATAGATGGATTTCATCAGCTGCTTCTAAAGTAGCTCTAATGTTAGTGCCTGACAATGAGACCTTCATTAGTAGTCTCATGGCCAAAGATGAAAGCTATGACAACTTGAAAGTTGAAATGGAAACCTTGGTTTCATTACTTCTGCCTTATCTTGAGCAGATCCACTCCATCCTGAGGTTTTATCACTTGGACAAGTTAAAGGCTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0006869 GO:0008150 GO:0008289 GO:0010876 GO:0012505 GO:0017089 GO:0031974 GO:0031981 GO:0031984 GO:0032365 GO:0033036 GO:0033218 GO:0035091 GO:0035621 GO:0035627 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046625 GO:0046836 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051861 GO:0070013 GO:0070273 GO:0071702 GO:0071705 GO:0097001 GO:0097367 GO:0098791 GO:1901264 GO:1901981

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTP

Protein Analysis

232

Amino Acids

26.2

Weight (kDa)

6.07

Isoelectric Point (pI)

52.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GLTP	PF08718	49 - 190	1.5e-39	Glycolipid transfer protein (GLTP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0009261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21360 AT1G21360 AT1G21360 AT3G21260 AT3G21260 AT3G21260
fragaria_vesca	FvH4_2g14560
malus_domestica	MD05G1017200.v1.1 MD10G1017400.v1.1
prunus_persica	Prupe.8G021000_v2.0.a1
pyrus_communis	pycom10g01110
rosa_chinensis	RchiOBHm_Chr6g0276911
rosa_laevigata	RLG00000013355
rosa_multiflora	Rmu_sc0001425.1_g000018 Rmu_sc0003882.1_g000009
rosa_roxburghii	Rroxscaffold_7G00191800
rosa_rugosa	Rorug06G0104900
rosa_samantha	Rh6AG214800 Rh6BG219700 Rh6CG222300 Rh6DG212500
rosa_wichuraiana	Rw6G018790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	27, 272, 378, 643
AcoI	YGGCCR	1 cut(s)	570
AcsI	RAATTY	1 cut(s)	415
AcuI	CTGAAG	1 cut(s)	267
AfiI	CCNNNNNNNGG	2 cut(s)	372, 663
AgsI	TTSAA	5 cut(s)	56, 294, 313, 598, 605
AjnI	CCWGG	1 cut(s)	430
AluBI	AGCT	5 cut(s)	104, 406, 509, 524, 585
AluI	AGCT	5 cut(s)	104, 406, 509, 524, 585
Alw26I	GTCTC	2 cut(s)	542, 569
AlwI	GGATC	4 cut(s)	27, 272, 378, 643
AoxI	GGCC	2 cut(s)	155, 570
ApaI	GGGCCC	1 cut(s)	159
ApeKI	GCWGC	2 cut(s)	137, 509
ApoI	RAATTY	1 cut(s)	415
AspS9I	GGNCC	3 cut(s)	155, 156, 206
AsuC2I	CCSGG	1 cut(s)	154
AsuHPI	GGTGA	2 cut(s)	125, 370
AvaII	GGWCC	1 cut(s)	206
AxyI	CCTNAGG	1 cut(s)	662
BaeGI	GKGCMC	1 cut(s)	159
BalI	TGGCCA	1 cut(s)	572
BanII	GRGCYC	1 cut(s)	159
BbvI	GCAGC	2 cut(s)	124, 496
BccI	CCATC	3 cut(s)	208, 489, 665
BceAI	ACGGC	2 cut(s)	346, 414
BciT130I	CCWGG	1 cut(s)	432
BclI	TGATCA	1 cut(s)	115
BcnI	CCSGG	1 cut(s)	154
BcoDI	GTCTC	2 cut(s)	542, 569
BglII	AGATCT	1 cut(s)	44
BisI	GCNGC	2 cut(s)	138, 510
BlsI	GCNGC	2 cut(s)	139, 511
Bme1390I	CCNGG	2 cut(s)	154, 432
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	3 cut(s)	155, 156, 206
BmiI	GGNNCC	1 cut(s)	157
BmrFI	CCNGG	2 cut(s)	154, 432
BmsI	GCATC	1 cut(s)	112
BpuEI	CTTGAG	1 cut(s)	662
BpuMI	CCSGG	1 cut(s)	154
BsaBI	GATNNNNATC	2 cut(s)	126, 237
BsaI	GGTCTC	1 cut(s)	542
BsaJI	CCNNGG	6 cut(s)	324, 387, 430, 431, 485, 615
Bsc4I	CCNNNNNNNGG	2 cut(s)	372, 663
Bse21I	CCTNAGG	1 cut(s)	662
Bse8I	GATNNNNATC	2 cut(s)	126, 237
BseBI	CCWGG	1 cut(s)	432
BseDI	CCNNGG	6 cut(s)	324, 387, 430, 431, 485, 615
BseGI	GGATG	1 cut(s)	657
BseJI	GATNNNNATC	2 cut(s)	126, 237
BseLI	CCNNNNNNNGG	2 cut(s)	372, 663
BseMII	CTCAG	1 cut(s)	653
BseSI	GKGCMC	1 cut(s)	159
BseXI	GCAGC	2 cut(s)	124, 496
BshFI	GGCC	2 cut(s)	157, 572
BsiSI	CCGG	1 cut(s)	153
BslI	CCNNNNNNNGG	2 cut(s)	372, 663
BsmAI	GTCTC	2 cut(s)	542, 569
BsnI	GGCC	2 cut(s)	157, 572
Bso31I	GGTCTC	1 cut(s)	542
Bsp120I	GGGCCC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	6 cut(s)	19, 44, 115, 277, 383, 648
Bsp19I	CCATGG	1 cut(s)	485
BspANI	GGCC	2 cut(s)	157, 572
BspCNI	CTCAG	1 cut(s)	654
BspHI	TCATGA	2 cut(s)	118, 130
BspLI	GGNNCC	1 cut(s)	157
BspPI	GGATC	4 cut(s)	27, 272, 378, 643
BspTNI	GGTCTC	1 cut(s)	542
BssECI	CCNNGG	6 cut(s)	324, 387, 430, 431, 485, 615
BssMI	GATC	6 cut(s)	19, 44, 115, 277, 383, 648
BssT1I	CCWWGG	3 cut(s)	387, 485, 615
Bst2UI	CCWGG	1 cut(s)	432
BstC8I	GCNNGC	1 cut(s)	450
BstDEI	CTNAG	1 cut(s)	662
BstDSI	CCRYGG	2 cut(s)	324, 485
BstF5I	GGATG	1 cut(s)	657
BstKTI	GATC	6 cut(s)	22, 47, 118, 280, 386, 651
BstMAI	GTCTC	2 cut(s)	542, 569
BstMBI	GATC	6 cut(s)	19, 44, 115, 277, 383, 648
BstNI	CCWGG	1 cut(s)	432
BstSCI	CCNGG	2 cut(s)	152, 430
BstSLI	GKGCMC	1 cut(s)	159
BstV1I	GCAGC	2 cut(s)	124, 496
BstX2I	RGATCY	3 cut(s)	44, 383, 648
BstXI	CCANNNNNNTGG	1 cut(s)	388
BstYI	RGATCY	3 cut(s)	44, 383, 648
Bsu36I	CCTNAGG	1 cut(s)	662
BsuRI	GGCC	2 cut(s)	157, 572
BtgI	CCRYGG	2 cut(s)	324, 485
BtsCI	GGATG	1 cut(s)	657
BtsI	GCAGTG	2 cut(s)	333, 459
BtsIMutI	CAGTG	2 cut(s)	333, 459
Cac8I	GCNNGC	1 cut(s)	450
CciI	TCATGA	2 cut(s)	118, 130
Cfr13I	GGNCC	3 cut(s)	155, 156, 206
CviAII	CATG	6 cut(s)	70, 119, 131, 442, 486, 568
DdeI	CTNAG	1 cut(s)	662
DpnI	GATC	6 cut(s)	21, 46, 117, 279, 385, 650
DpnII	GATC	6 cut(s)	19, 44, 115, 277, 383, 648
DraI	TTTAAA	1 cut(s)	480
EaeI	YGGCCR	1 cut(s)	570
Eco130I	CCWWGG	3 cut(s)	387, 485, 615
Eco24I	GRGCYC	1 cut(s)	159
Eco31I	GGTCTC	1 cut(s)	542
Eco47I	GGWCC	1 cut(s)	206
Eco57I	CTGAAG	1 cut(s)	267
Eco81I	CCTNAGG	1 cut(s)	662
EcoO109I	RGGNCCY	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	430
EcoT14I	CCWWGG	3 cut(s)	387, 485, 615
EcoT38I	GRGCYC	1 cut(s)	159
ErhI	CCWWGG	3 cut(s)	387, 485, 615
FaeI	CATG	6 cut(s)	73, 122, 134, 445, 489, 571
FatI	CATG	6 cut(s)	69, 118, 130, 441, 485, 567
FbaI	TGATCA	1 cut(s)	115
Fnu4HI	GCNGC	2 cut(s)	138, 510
FokI	GGATG	1 cut(s)	644
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	2 cut(s)	138, 510
GluI	GCNGC	2 cut(s)	138, 510
HaeIII	GGCC	2 cut(s)	157, 572
HapII	CCGG	1 cut(s)	153
Hin1II	CATG	6 cut(s)	73, 122, 134, 445, 489, 571
HinfI	GANTC	2 cut(s)	272, 461
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	2 cut(s)	125, 370
Hpy188I	TCNGA	5 cut(s)	24, 37, 243, 252, 277
Hpy188III	TCNNGA	5 cut(s)	119, 131, 194, 641, 661
HpyAV	CCTTC	3 cut(s)	291, 376, 562
HpyCH4V	TGCA	2 cut(s)	338, 412
HpyF3I	CTNAG	1 cut(s)	662
Hsp92II	CATG	6 cut(s)	73, 122, 134, 445, 489, 571
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	6 cut(s)	19, 44, 115, 277, 383, 648
LpnPI	CCDG	8 cut(s)	166, 394, 408, 417, 434, 444, 552, 674
Lsp1109I	GCAGC	2 cut(s)	124, 496
LweI	GCATC	1 cut(s)	112
MalI	GATC	6 cut(s)	21, 46, 117, 279, 385, 650
MboI	GATC	6 cut(s)	19, 44, 115, 277, 383, 648
MboII	GAAGA	4 cut(s)	22, 68, 176, 470
MflI	RGATCY	3 cut(s)	44, 383, 648
MhlI	GDGCHC	1 cut(s)	159
MlsI	TGGCCA	1 cut(s)	572
MluCI	AATT	1 cut(s)	415
MluNI	TGGCCA	1 cut(s)	572
MnlI	CCTC	4 cut(s)	127, 258, 482, 657
Mox20I	TGGCCA	1 cut(s)	572
MscI	TGGCCA	1 cut(s)	572
MseI	TTAA	4 cut(s)	75, 224, 479, 686
Msp20I	TGGCCA	1 cut(s)	572
MspA1I	CMGCKG	1 cut(s)	509
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	2 cut(s)	154, 432
MvaI	CCWGG	1 cut(s)	432
NciI	CCSGG	1 cut(s)	154
NcoI	CCATGG	1 cut(s)	485
NdeII	GATC	6 cut(s)	19, 44, 115, 277, 383, 648
NlaIII	CATG	6 cut(s)	73, 122, 134, 445, 489, 571
NlaIV	GGNNCC	1 cut(s)	157
PagI	TCATGA	2 cut(s)	118, 130
PasI	CCCWGGG	1 cut(s)	431
PfeI	GAWTC	2 cut(s)	272, 461
PkrI	GCNGC	2 cut(s)	139, 511
Psp6I	CCWGG	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	430
PspN4I	GGNNCC	1 cut(s)	157
PspOMI	GGGCCC	1 cut(s)	155
PspPI	GGNCC	3 cut(s)	155, 156, 206
PsuI	RGATCY	3 cut(s)	44, 383, 648
PvuII	CAGCTG	1 cut(s)	509
SaqAI	TTAA	4 cut(s)	75, 224, 479, 686
SatI	GCNGC	2 cut(s)	138, 510
Sau3AI	GATC	6 cut(s)	19, 44, 115, 277, 383, 648
Sau96I	GGNCC	3 cut(s)	155, 156, 206
ScrFI	CCNGG	2 cut(s)	154, 432
SduI	GDGCHC	1 cut(s)	159
SfaNI	GCATC	1 cut(s)	112
SinI	GGWCC	1 cut(s)	206
SmlI	CTYRAG	1 cut(s)	641
SmoI	CTYRAG	1 cut(s)	641
Sse9I	AATT	1 cut(s)	415
SspI	AATATT	1 cut(s)	247
StyD4I	CCNGG	2 cut(s)	152, 430
StyI	CCWWGG	3 cut(s)	387, 485, 615
TaqI	TCGA	2 cut(s)	187, 195
TaqII	GACCGA	1 cut(s)	55
TasI	AATT	1 cut(s)	415
TfiI	GAWTC	2 cut(s)	272, 461
Tru1I	TTAA	4 cut(s)	75, 224, 479, 686
Tru9I	TTAA	4 cut(s)	75, 224, 479, 686
TscAI	CASTG	2 cut(s)	340, 459
TseI	GCWGC	2 cut(s)	137, 509
TspDTI	ATGAA	7 cut(s)	17, 227, 458, 492, 544, 594, 612
TspGWI	ACGGA	1 cut(s)	341
TspRI	CASTG	2 cut(s)	340, 459
VpaK11BI	GGWCC	1 cut(s)	206
XapI	RAATTY	1 cut(s)	415
XcmI	CCANNNNNNNNNTGG	2 cut(s)	107, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.