Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001425.1

Orthogroup ID

OG0009261

Physical Location & Seq

Genomic Coordinates Reverse (-)

55934 .. 58450

Gene Structure 2517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001425.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atggatcagagtaaagggtcagagattagatctgccattgaagaactctcggtcatggttaaagttataggtgtaataacactccaagctgaaaatggtgatcatgatgctcatgatgctgcgtttatcaatcatgaggctgctcatattcccaccgggccctttctttctctttgctactcgcttcttcgagttctcgataaaataggaccaacgatggctgttttaagacaagatgttcatcagaatattcggagattggaaacgaggaacgaatctgatccttcagcatattcaaatatggttgagatattgaaaacagaagccacggacggcactgcaagaaatcttacaagttgtagtagagccttcgtttggctcaccagatccttggattttacggcagagctattgcaaaatttagcaggaaacccagggcagaacatgaagcaggcagtggaagaatcttacaacctcactttaaagccatggcatagatggatttcatcagctgcttctaaagtagctctaatgttagtgcctgacaatgagaccttcattagtagtctcatggccaaagatgaaagctatgacaacttgaaagttgaaatggaaaccttggtttcattacttctgccttatcttgagcagatccactccatcctgaggttttatcacttggacaagttaaaggctaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0006869 GO:0008150 GO:0008289 GO:0010876 GO:0012505 GO:0017089 GO:0031974 GO:0031981 GO:0031984 GO:0032365 GO:0033036 GO:0033218 GO:0035091 GO:0035621 GO:0035627 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046625 GO:0046836 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051861 GO:0070013 GO:0070273 GO:0071702 GO:0071705 GO:0097001 GO:0097367 GO:0098791 GO:1901264 GO:1901981

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTP

Protein Analysis

233

Amino Acids

26.17

Weight (kDa)

5.48

Isoelectric Point (pI)

51.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21360 AT1G21360 AT1G21360 AT3G21260 AT3G21260 AT3G21260
fragaria_vesca	FvH4_2g14560
malus_domestica	MD05G1017200.v1.1 MD10G1017400.v1.1
prunus_persica	Prupe.8G021000_v2.0.a1
pyrus_communis	pycom10g01110
rosa_chinensis	RchiOBHm_Chr6g0276911
rosa_laevigata	RLG00000013355
rosa_multiflora	Rmu_sc0001425.1_g000018 Rmu_sc0003882.1_g000009
rosa_roxburghii	Rroxscaffold_7G00191800
rosa_rugosa	Rorug06G0104900
rosa_samantha	Rh6AG214800 Rh6BG219700 Rh6CG222300 Rh6DG212500
rosa_wichuraiana	Rw6G018790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	12, 275, 381, 646
AcoI	YGGCCR	1 cut(s)	573
AcsI	RAATTY	1 cut(s)	418
AcuI	CTGAAG	1 cut(s)	270
AfiI	CCNNNNNNNGG	2 cut(s)	375, 666
AgsI	TTSAA	5 cut(s)	41, 297, 316, 601, 608
AjnI	CCWGG	1 cut(s)	433
AluBI	AGCT	5 cut(s)	89, 409, 512, 527, 588
AluI	AGCT	5 cut(s)	89, 409, 512, 527, 588
Alw26I	GTCTC	2 cut(s)	545, 572
AlwI	GGATC	4 cut(s)	12, 275, 381, 646
AoxI	GGCC	2 cut(s)	158, 573
ApaI	GGGCCC	1 cut(s)	162
ApeKI	GCWGC	3 cut(s)	119, 140, 512
ApoI	RAATTY	1 cut(s)	418
AspS9I	GGNCC	3 cut(s)	158, 159, 209
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	2 cut(s)	110, 373
AvaII	GGWCC	1 cut(s)	209
AxyI	CCTNAGG	1 cut(s)	665
BaeGI	GKGCMC	1 cut(s)	162
BalI	TGGCCA	1 cut(s)	575
BanII	GRGCYC	1 cut(s)	162
BbvI	GCAGC	3 cut(s)	106, 127, 499
BccI	CCATC	3 cut(s)	211, 492, 668
BceAI	ACGGC	2 cut(s)	349, 417
BciT130I	CCWGG	1 cut(s)	435
BclI	TGATCA	1 cut(s)	100
BcnI	CCSGG	1 cut(s)	157
BcoDI	GTCTC	2 cut(s)	545, 572
BglII	AGATCT	1 cut(s)	29
BisI	GCNGC	3 cut(s)	120, 141, 513
BlsI	GCNGC	3 cut(s)	121, 142, 514
Bme1390I	CCNGG	2 cut(s)	157, 435
Bme18I	GGWCC	1 cut(s)	209
BmgT120I	GGNCC	3 cut(s)	158, 159, 209
BmiI	GGNNCC	1 cut(s)	160
BmrFI	CCNGG	2 cut(s)	157, 435
BmsI	GCATC	2 cut(s)	97, 106
BpuEI	CTTGAG	1 cut(s)	665
BpuMI	CCSGG	1 cut(s)	157
BsaBI	GATNNNNATC	1 cut(s)	240
BsaI	GGTCTC	1 cut(s)	545
BsaJI	CCNNGG	6 cut(s)	327, 390, 433, 434, 488, 618
Bsc4I	CCNNNNNNNGG	2 cut(s)	375, 666
Bse21I	CCTNAGG	1 cut(s)	665
Bse8I	GATNNNNATC	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	435
BseDI	CCNNGG	6 cut(s)	327, 390, 433, 434, 488, 618
BseGI	GGATG	1 cut(s)	660
BseJI	GATNNNNATC	1 cut(s)	240
BseLI	CCNNNNNNNGG	2 cut(s)	375, 666
BseMII	CTCAG	1 cut(s)	656
BseSI	GKGCMC	1 cut(s)	162
BseXI	GCAGC	3 cut(s)	106, 127, 499
BshFI	GGCC	2 cut(s)	160, 575
BsiSI	CCGG	1 cut(s)	156
BslI	CCNNNNNNNGG	2 cut(s)	375, 666
BsmAI	GTCTC	2 cut(s)	545, 572
BsnI	GGCC	2 cut(s)	160, 575
Bso31I	GGTCTC	1 cut(s)	545
Bsp120I	GGGCCC	1 cut(s)	158
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp143I	GATC	6 cut(s)	4, 29, 100, 280, 386, 651
Bsp19I	CCATGG	1 cut(s)	488
BspANI	GGCC	2 cut(s)	160, 575
BspCNI	CTCAG	1 cut(s)	657
BspHI	TCATGA	3 cut(s)	103, 112, 133
BspLI	GGNNCC	1 cut(s)	160
BspPI	GGATC	4 cut(s)	12, 275, 381, 646
BspTNI	GGTCTC	1 cut(s)	545
BssECI	CCNNGG	6 cut(s)	327, 390, 433, 434, 488, 618
BssMI	GATC	6 cut(s)	4, 29, 100, 280, 386, 651
BssT1I	CCWWGG	3 cut(s)	390, 488, 618
Bst2UI	CCWGG	1 cut(s)	435
BstC8I	GCNNGC	1 cut(s)	453
BstDEI	CTNAG	1 cut(s)	665
BstDSI	CCRYGG	2 cut(s)	327, 488
BstF5I	GGATG	1 cut(s)	660
BstKTI	GATC	6 cut(s)	7, 32, 103, 283, 389, 654
BstMAI	GTCTC	2 cut(s)	545, 572
BstMBI	GATC	6 cut(s)	4, 29, 100, 280, 386, 651
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstNI	CCWGG	1 cut(s)	435
BstSCI	CCNGG	2 cut(s)	155, 433
BstSLI	GKGCMC	1 cut(s)	162
BstV1I	GCAGC	3 cut(s)	106, 127, 499
BstX2I	RGATCY	3 cut(s)	29, 386, 651
BstXI	CCANNNNNNTGG	1 cut(s)	391
BstYI	RGATCY	3 cut(s)	29, 386, 651
Bsu36I	CCTNAGG	1 cut(s)	665
BsuRI	GGCC	2 cut(s)	160, 575
BtgI	CCRYGG	2 cut(s)	327, 488
BtsCI	GGATG	1 cut(s)	660
BtsI	GCAGTG	2 cut(s)	336, 462
BtsIMutI	CAGTG	2 cut(s)	336, 462
Cac8I	GCNNGC	1 cut(s)	453
CciI	TCATGA	3 cut(s)	103, 112, 133
Cfr13I	GGNCC	3 cut(s)	158, 159, 209
CviAII	CATG	7 cut(s)	55, 104, 113, 134, 445, 489, 571
DdeI	CTNAG	1 cut(s)	665
DpnI	GATC	6 cut(s)	6, 31, 102, 282, 388, 653
DpnII	GATC	6 cut(s)	4, 29, 100, 280, 386, 651
DraI	TTTAAA	1 cut(s)	483
EaeI	YGGCCR	1 cut(s)	573
Eco130I	CCWWGG	3 cut(s)	390, 488, 618
Eco24I	GRGCYC	1 cut(s)	162
Eco31I	GGTCTC	1 cut(s)	545
Eco47I	GGWCC	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	270
Eco81I	CCTNAGG	1 cut(s)	665
EcoO109I	RGGNCCY	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	433
EcoT14I	CCWWGG	3 cut(s)	390, 488, 618
EcoT38I	GRGCYC	1 cut(s)	162
ErhI	CCWWGG	3 cut(s)	390, 488, 618
FaeI	CATG	7 cut(s)	58, 107, 116, 137, 448, 492, 574
FatI	CATG	7 cut(s)	54, 103, 112, 133, 444, 488, 570
FbaI	TGATCA	1 cut(s)	100
Fnu4HI	GCNGC	3 cut(s)	120, 141, 513
FokI	GGATG	1 cut(s)	647
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	3 cut(s)	120, 141, 513
GluI	GCNGC	3 cut(s)	120, 141, 513
HaeIII	GGCC	2 cut(s)	160, 575
HapII	CCGG	1 cut(s)	156
Hin1II	CATG	7 cut(s)	58, 107, 116, 137, 448, 492, 574
HinfI	GANTC	2 cut(s)	275, 464
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	2 cut(s)	110, 373
Hpy188I	TCNGA	5 cut(s)	9, 22, 246, 255, 280
Hpy188III	TCNNGA	6 cut(s)	104, 113, 134, 197, 644, 664
HpyAV	CCTTC	3 cut(s)	294, 379, 565
HpyCH4V	TGCA	2 cut(s)	341, 415
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	1 cut(s)	665
Hsp92II	CATG	7 cut(s)	58, 107, 116, 137, 448, 492, 574
Ksp22I	TGATCA	1 cut(s)	100
Kzo9I	GATC	6 cut(s)	4, 29, 100, 280, 386, 651
LpnPI	CCDG	8 cut(s)	169, 397, 411, 420, 437, 447, 555, 677
Lsp1109I	GCAGC	3 cut(s)	106, 127, 499
LweI	GCATC	2 cut(s)	97, 106
MalI	GATC	6 cut(s)	6, 31, 102, 282, 388, 653
MboI	GATC	6 cut(s)	4, 29, 100, 280, 386, 651
MboII	GAAGA	3 cut(s)	53, 179, 473
MflI	RGATCY	3 cut(s)	29, 386, 651
MhlI	GDGCHC	1 cut(s)	162
MlsI	TGGCCA	1 cut(s)	575
MluCI	AATT	1 cut(s)	418
MluNI	TGGCCA	1 cut(s)	575
MnlI	CCTC	4 cut(s)	130, 261, 485, 660
Mox20I	TGGCCA	1 cut(s)	575
MscI	TGGCCA	1 cut(s)	575
MseI	TTAA	4 cut(s)	60, 227, 482, 689
Msp20I	TGGCCA	1 cut(s)	575
MspA1I	CMGCKG	1 cut(s)	512
MspI	CCGG	1 cut(s)	156
MspR9I	CCNGG	2 cut(s)	157, 435
MvaI	CCWGG	1 cut(s)	435
MwoI	GCNNNNNNNGC	1 cut(s)	116
NciI	CCSGG	1 cut(s)	157
NcoI	CCATGG	1 cut(s)	488
NdeII	GATC	6 cut(s)	4, 29, 100, 280, 386, 651
NlaIII	CATG	7 cut(s)	58, 107, 116, 137, 448, 492, 574
NlaIV	GGNNCC	1 cut(s)	160
PagI	TCATGA	3 cut(s)	103, 112, 133
PasI	CCCWGGG	1 cut(s)	434
PfeI	GAWTC	2 cut(s)	275, 464
PkrI	GCNGC	3 cut(s)	121, 142, 514
Psp6I	CCWGG	1 cut(s)	433
PspGI	CCWGG	1 cut(s)	433
PspN4I	GGNNCC	1 cut(s)	160
PspOMI	GGGCCC	1 cut(s)	158
PspPI	GGNCC	3 cut(s)	158, 159, 209
PsuI	RGATCY	3 cut(s)	29, 386, 651
PvuII	CAGCTG	1 cut(s)	512
SaqAI	TTAA	4 cut(s)	60, 227, 482, 689
SatI	GCNGC	3 cut(s)	120, 141, 513
Sau3AI	GATC	6 cut(s)	4, 29, 100, 280, 386, 651
Sau96I	GGNCC	3 cut(s)	158, 159, 209
ScrFI	CCNGG	2 cut(s)	157, 435
SduI	GDGCHC	1 cut(s)	162
SfaNI	GCATC	2 cut(s)	97, 106
SinI	GGWCC	1 cut(s)	209
SmlI	CTYRAG	1 cut(s)	644
SmoI	CTYRAG	1 cut(s)	644
Sse9I	AATT	1 cut(s)	418
SspI	AATATT	1 cut(s)	250
StyD4I	CCNGG	2 cut(s)	155, 433
StyI	CCWWGG	3 cut(s)	390, 488, 618
TaqI	TCGA	2 cut(s)	190, 198
TaqII	GACCGA	1 cut(s)	40
TasI	AATT	1 cut(s)	418
TfiI	GAWTC	2 cut(s)	275, 464
Tru1I	TTAA	4 cut(s)	60, 227, 482, 689
Tru9I	TTAA	4 cut(s)	60, 227, 482, 689
TscAI	CASTG	2 cut(s)	343, 462
TseI	GCWGC	3 cut(s)	119, 140, 512
TspDTI	ATGAA	6 cut(s)	230, 461, 495, 547, 597, 615
TspGWI	ACGGA	1 cut(s)	344
TspRI	CASTG	2 cut(s)	343, 462
VpaK11BI	GGWCC	1 cut(s)	209
XapI	RAATTY	1 cut(s)	418
XcmI	CCANNNNNNNNNTGG	2 cut(s)	92, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.