Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003882.1

Orthogroup ID

OG0009261

Physical Location & Seq

Genomic Coordinates Forward (+)

33400 .. 35995

Gene Structure 2596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003882.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atggatcagagtaaagggtcagagattagatctgccattgaagaactctcggtcatggttaaagttataggtgtaataacactccaagctgaaaatggtgatcatgatgctcatcatgaggctgctcatattcccaccgggccctttctttctctttgctactcgcttcttcgagttctcgataaaataggaccaacgatggctgttttaagacaagatgttcatcagaatattcggagattggaaacgaggaacgaatctgatccttcagcatattcaaatatggttgagatattgaaaacagaagccacggacggcactgcaagaaatcttacaagttgtagtagagccttcgtttggctcaccagatccttggattttacggcagagctattgcaaaatttagcaggaaacccagggcagaacatgaagcaggcagtggaagaatcttacaacctcactttaaagccatggcatagatggatttcatcagctgcttctaaagtagctttaatgttagtgcctgacaatgagaccttcattagtagtctcatggccaaagatgaaagctatgacaacttgaaagttgaaatggaaaccttggtttcattacttctgccttatcttgagcagatccactccatcctgaggttttatcacttggacaagttaaaggctaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0006869 GO:0008150 GO:0008289 GO:0010876 GO:0012505 GO:0017089 GO:0031974 GO:0031981 GO:0031984 GO:0032365 GO:0033036 GO:0033218 GO:0035091 GO:0035621 GO:0035627 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046625 GO:0046836 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051861 GO:0070013 GO:0070273 GO:0071702 GO:0071705 GO:0097001 GO:0097367 GO:0098791 GO:1901264 GO:1901981

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GLTP

Protein Analysis

227

Amino Acids

25.54

Weight (kDa)

5.61

Isoelectric Point (pI)

52.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21360 AT1G21360 AT1G21360 AT3G21260 AT3G21260 AT3G21260
fragaria_vesca	FvH4_2g14560
malus_domestica	MD05G1017200.v1.1 MD10G1017400.v1.1
prunus_persica	Prupe.8G021000_v2.0.a1
pyrus_communis	pycom10g01110
rosa_chinensis	RchiOBHm_Chr6g0276911
rosa_laevigata	RLG00000013355
rosa_multiflora	Rmu_sc0001425.1_g000018 Rmu_sc0003882.1_g000009
rosa_roxburghii	Rroxscaffold_7G00191800
rosa_rugosa	Rorug06G0104900
rosa_samantha	Rh6AG214800 Rh6BG219700 Rh6CG222300 Rh6DG212500
rosa_wichuraiana	Rw6G018790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	12, 257, 363, 628
AcoI	YGGCCR	1 cut(s)	555
AcsI	RAATTY	1 cut(s)	400
AcuI	CTGAAG	1 cut(s)	252
AfiI	CCNNNNNNNGG	2 cut(s)	357, 648
AgsI	TTSAA	5 cut(s)	41, 279, 298, 583, 590
AjnI	CCWGG	1 cut(s)	415
AluBI	AGCT	5 cut(s)	89, 391, 494, 509, 570
AluI	AGCT	5 cut(s)	89, 391, 494, 509, 570
Alw26I	GTCTC	2 cut(s)	527, 554
AlwI	GGATC	4 cut(s)	12, 257, 363, 628
AoxI	GGCC	2 cut(s)	140, 555
ApaI	GGGCCC	1 cut(s)	144
ApeKI	GCWGC	2 cut(s)	122, 494
ApoI	RAATTY	1 cut(s)	400
AspS9I	GGNCC	3 cut(s)	140, 141, 191
AsuC2I	CCSGG	1 cut(s)	139
AsuHPI	GGTGA	2 cut(s)	110, 355
AvaII	GGWCC	1 cut(s)	191
AxyI	CCTNAGG	1 cut(s)	647
BaeGI	GKGCMC	1 cut(s)	144
BalI	TGGCCA	1 cut(s)	557
BanII	GRGCYC	1 cut(s)	144
BbvI	GCAGC	2 cut(s)	109, 481
BccI	CCATC	3 cut(s)	193, 474, 650
BceAI	ACGGC	2 cut(s)	331, 399
BciT130I	CCWGG	1 cut(s)	417
BclI	TGATCA	1 cut(s)	100
BcnI	CCSGG	1 cut(s)	139
BcoDI	GTCTC	2 cut(s)	527, 554
BglII	AGATCT	1 cut(s)	29
BisI	GCNGC	2 cut(s)	123, 495
BlsI	GCNGC	2 cut(s)	124, 496
Bme1390I	CCNGG	2 cut(s)	139, 417
Bme18I	GGWCC	1 cut(s)	191
BmgT120I	GGNCC	3 cut(s)	140, 141, 191
BmiI	GGNNCC	1 cut(s)	142
BmrFI	CCNGG	2 cut(s)	139, 417
BmsI	GCATC	1 cut(s)	97
BpuEI	CTTGAG	1 cut(s)	647
BpuMI	CCSGG	1 cut(s)	139
BsaBI	GATNNNNATC	2 cut(s)	111, 222
BsaI	GGTCTC	1 cut(s)	527
BsaJI	CCNNGG	6 cut(s)	309, 372, 415, 416, 470, 600
Bsc4I	CCNNNNNNNGG	2 cut(s)	357, 648
Bse21I	CCTNAGG	1 cut(s)	647
Bse8I	GATNNNNATC	2 cut(s)	111, 222
BseBI	CCWGG	1 cut(s)	417
BseDI	CCNNGG	6 cut(s)	309, 372, 415, 416, 470, 600
BseGI	GGATG	1 cut(s)	642
BseJI	GATNNNNATC	2 cut(s)	111, 222
BseLI	CCNNNNNNNGG	2 cut(s)	357, 648
BseMII	CTCAG	1 cut(s)	638
BseSI	GKGCMC	1 cut(s)	144
BseXI	GCAGC	2 cut(s)	109, 481
BshFI	GGCC	2 cut(s)	142, 557
BsiSI	CCGG	1 cut(s)	138
BslI	CCNNNNNNNGG	2 cut(s)	357, 648
BsmAI	GTCTC	2 cut(s)	527, 554
BsnI	GGCC	2 cut(s)	142, 557
Bso31I	GGTCTC	1 cut(s)	527
Bsp120I	GGGCCC	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	6 cut(s)	4, 29, 100, 262, 368, 633
Bsp19I	CCATGG	1 cut(s)	470
BspANI	GGCC	2 cut(s)	142, 557
BspCNI	CTCAG	1 cut(s)	639
BspHI	TCATGA	2 cut(s)	103, 115
BspLI	GGNNCC	1 cut(s)	142
BspPI	GGATC	4 cut(s)	12, 257, 363, 628
BspTNI	GGTCTC	1 cut(s)	527
BssECI	CCNNGG	6 cut(s)	309, 372, 415, 416, 470, 600
BssMI	GATC	6 cut(s)	4, 29, 100, 262, 368, 633
BssT1I	CCWWGG	3 cut(s)	372, 470, 600
Bst2UI	CCWGG	1 cut(s)	417
BstC8I	GCNNGC	1 cut(s)	435
BstDEI	CTNAG	1 cut(s)	647
BstDSI	CCRYGG	2 cut(s)	309, 470
BstF5I	GGATG	1 cut(s)	642
BstKTI	GATC	6 cut(s)	7, 32, 103, 265, 371, 636
BstMAI	GTCTC	2 cut(s)	527, 554
BstMBI	GATC	6 cut(s)	4, 29, 100, 262, 368, 633
BstNI	CCWGG	1 cut(s)	417
BstSCI	CCNGG	2 cut(s)	137, 415
BstSLI	GKGCMC	1 cut(s)	144
BstV1I	GCAGC	2 cut(s)	109, 481
BstX2I	RGATCY	3 cut(s)	29, 368, 633
BstXI	CCANNNNNNTGG	1 cut(s)	373
BstYI	RGATCY	3 cut(s)	29, 368, 633
Bsu36I	CCTNAGG	1 cut(s)	647
BsuRI	GGCC	2 cut(s)	142, 557
BtgI	CCRYGG	2 cut(s)	309, 470
BtsCI	GGATG	1 cut(s)	642
BtsI	GCAGTG	2 cut(s)	318, 444
BtsIMutI	CAGTG	2 cut(s)	318, 444
Cac8I	GCNNGC	1 cut(s)	435
CciI	TCATGA	2 cut(s)	103, 115
Cfr13I	GGNCC	3 cut(s)	140, 141, 191
CviAII	CATG	6 cut(s)	55, 104, 116, 427, 471, 553
DdeI	CTNAG	1 cut(s)	647
DpnI	GATC	6 cut(s)	6, 31, 102, 264, 370, 635
DpnII	GATC	6 cut(s)	4, 29, 100, 262, 368, 633
DraI	TTTAAA	1 cut(s)	465
EaeI	YGGCCR	1 cut(s)	555
Eco130I	CCWWGG	3 cut(s)	372, 470, 600
Eco24I	GRGCYC	1 cut(s)	144
Eco31I	GGTCTC	1 cut(s)	527
Eco47I	GGWCC	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	252
Eco81I	CCTNAGG	1 cut(s)	647
EcoO109I	RGGNCCY	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	415
EcoT14I	CCWWGG	3 cut(s)	372, 470, 600
EcoT38I	GRGCYC	1 cut(s)	144
ErhI	CCWWGG	3 cut(s)	372, 470, 600
FaeI	CATG	6 cut(s)	58, 107, 119, 430, 474, 556
FatI	CATG	6 cut(s)	54, 103, 115, 426, 470, 552
FbaI	TGATCA	1 cut(s)	100
Fnu4HI	GCNGC	2 cut(s)	123, 495
FokI	GGATG	1 cut(s)	629
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	2 cut(s)	123, 495
GluI	GCNGC	2 cut(s)	123, 495
HaeIII	GGCC	2 cut(s)	142, 557
HapII	CCGG	1 cut(s)	138
Hin1II	CATG	6 cut(s)	58, 107, 119, 430, 474, 556
HinfI	GANTC	2 cut(s)	257, 446
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	2 cut(s)	110, 355
Hpy188I	TCNGA	5 cut(s)	9, 22, 228, 237, 262
Hpy188III	TCNNGA	5 cut(s)	104, 116, 179, 626, 646
HpyAV	CCTTC	3 cut(s)	276, 361, 547
HpyCH4V	TGCA	2 cut(s)	323, 397
HpyF3I	CTNAG	1 cut(s)	647
Hsp92II	CATG	6 cut(s)	58, 107, 119, 430, 474, 556
Ksp22I	TGATCA	1 cut(s)	100
Kzo9I	GATC	6 cut(s)	4, 29, 100, 262, 368, 633
LpnPI	CCDG	8 cut(s)	151, 379, 393, 402, 419, 429, 537, 659
Lsp1109I	GCAGC	2 cut(s)	109, 481
LweI	GCATC	1 cut(s)	97
MalI	GATC	6 cut(s)	6, 31, 102, 264, 370, 635
MboI	GATC	6 cut(s)	4, 29, 100, 262, 368, 633
MboII	GAAGA	3 cut(s)	53, 161, 455
MflI	RGATCY	3 cut(s)	29, 368, 633
MhlI	GDGCHC	1 cut(s)	144
MlsI	TGGCCA	1 cut(s)	557
MluCI	AATT	1 cut(s)	400
MluNI	TGGCCA	1 cut(s)	557
MnlI	CCTC	4 cut(s)	112, 243, 467, 642
Mox20I	TGGCCA	1 cut(s)	557
MscI	TGGCCA	1 cut(s)	557
MseI	TTAA	5 cut(s)	60, 209, 464, 512, 671
Msp20I	TGGCCA	1 cut(s)	557
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	2 cut(s)	139, 417
MvaI	CCWGG	1 cut(s)	417
NciI	CCSGG	1 cut(s)	139
NcoI	CCATGG	1 cut(s)	470
NdeII	GATC	6 cut(s)	4, 29, 100, 262, 368, 633
NlaIII	CATG	6 cut(s)	58, 107, 119, 430, 474, 556
NlaIV	GGNNCC	1 cut(s)	142
PagI	TCATGA	2 cut(s)	103, 115
PasI	CCCWGGG	1 cut(s)	416
PfeI	GAWTC	2 cut(s)	257, 446
PkrI	GCNGC	2 cut(s)	124, 496
Psp6I	CCWGG	1 cut(s)	415
PspGI	CCWGG	1 cut(s)	415
PspN4I	GGNNCC	1 cut(s)	142
PspOMI	GGGCCC	1 cut(s)	140
PspPI	GGNCC	3 cut(s)	140, 141, 191
PsuI	RGATCY	3 cut(s)	29, 368, 633
PvuII	CAGCTG	1 cut(s)	494
SaqAI	TTAA	5 cut(s)	60, 209, 464, 512, 671
SatI	GCNGC	2 cut(s)	123, 495
Sau3AI	GATC	6 cut(s)	4, 29, 100, 262, 368, 633
Sau96I	GGNCC	3 cut(s)	140, 141, 191
ScrFI	CCNGG	2 cut(s)	139, 417
SduI	GDGCHC	1 cut(s)	144
SfaNI	GCATC	1 cut(s)	97
SinI	GGWCC	1 cut(s)	191
SmlI	CTYRAG	1 cut(s)	626
SmoI	CTYRAG	1 cut(s)	626
Sse9I	AATT	1 cut(s)	400
SspI	AATATT	1 cut(s)	232
StyD4I	CCNGG	2 cut(s)	137, 415
StyI	CCWWGG	3 cut(s)	372, 470, 600
TaqI	TCGA	2 cut(s)	172, 180
TaqII	GACCGA	1 cut(s)	40
TasI	AATT	1 cut(s)	400
TfiI	GAWTC	2 cut(s)	257, 446
Tru1I	TTAA	5 cut(s)	60, 209, 464, 512, 671
Tru9I	TTAA	5 cut(s)	60, 209, 464, 512, 671
TscAI	CASTG	2 cut(s)	325, 444
TseI	GCWGC	2 cut(s)	122, 494
TspDTI	ATGAA	6 cut(s)	212, 443, 477, 529, 579, 597
TspGWI	ACGGA	1 cut(s)	326
TspRI	CASTG	2 cut(s)	325, 444
VpaK11BI	GGWCC	1 cut(s)	191
XapI	RAATTY	1 cut(s)	400
XcmI	CCANNNNNNNNNTGG	2 cut(s)	92, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.