AT1G21410

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005717
Physical Location & Seq
Forward (+)
7496998 .. 7499616
2619 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G21410.1

Sequence Viewer

Length: 1083 bp
ATGGTGATGGGAGGAGAAGCATCCATGGAACTGGACCAGTGTTTTCAGAAGATGAAGATGGAAGGAATCTCGATCAAAGAGTGGAAAGATATCCCTGTGGAGCTTCTGATGAGGATCCTTTCCCTTGTTGATGATCGTAATGTCATTGTTGCTTCTGGTGTTTGCACTGGCTGGAGAGATGCTATCTCTTTTGGCCTCACTCGTCTCCGTCTATCTTGGTGCAACAACAACATGAACAGCTTGGTTCTTTCTCTTGTTCCCAAGTTTGTAAAGCTGCAGACTTTAAATCTAAGGCAGGACAAACCGCAACTAGAGGACAATGCAGTGGAGGCCATAGCAAATCACTGCCATGAGTTACAAGAACTTGATCTCAGCAAAAGCTTGAAAATTACAGACCGTTCACTTTATGCACTTGCTCATGGTTGCCCAGACCTCACAAAACTCAACCTTAGTGGCTGCACTTCATTCAGCGACACTGCTATTGCGTATTTGACCAGATTCTGCAGAAAGCTTAAAGTTTTGAATCTTTGCGGATGTGTCAAAGCTGTAACTGACAATGCCTTGGAGGCTATTGGGAATAACTGCAATCAGATGCAGTCACTAAACTTGGGATGGTGTGAGAATATCAGTGATGATGGGGTAATGAGTTTAGCTTATGGCTGTCCAGATCTCAGGACCCTTGACCTCTGCGGCTGTGTTCTTATTACAGATGAGAGTGTGGTAGCTCTAGCAGACTGGTGTGTCCACTTGAGGTCACTGGGGCTATACTATTGCAGAAACATAACAGACAGAGCAATGTACTCGCTAGCTCAAAGCGGGGTAAAGAACAAACCGGGATCGTGGAAATCGGTTAAGAAAGGTAAATACGATGAAGAAGGACTGAGAAGTCTCAACATTAGCCAATGCACTGCCCTTACACCTTCAGCGGTTCAAGCTGTTTGCGATTCATTTCCCGCACTTCACACATGCTCAGGAAGGCATTCGCTTGTCATGAGCGGCTGTCTGAACTTAACAACTGTGCACTGTGCTTGTATCCTTCAGGCTCATCGTGCACACAATGCGGTTCCTCATCCTGCTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010286 GO:0010311 GO:0010498 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0022622 GO:0030163 GO:0031146 GO:0031461 GO:0032446 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048527 GO:0048528 GO:0048580 GO:0048581 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051302 GO:0051603 GO:0051716 GO:0051781 GO:0065007 GO:0070647 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901332 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905392 GO:1905393 GO:1990234 GO:2000023 GO:2000026 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko04068 ko04110 ko04120 ko04150 ko05168 ko05169 ko05200 ko05203 ko05222 map04068 map04110 map04120 map04150 map05168 map05169 map05200 map05203 map05222
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

360

Amino Acids

39.61

Weight (kDa)

7.09

Isoelectric Point (pI)

41.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 28 - 63 7.7e-06 F-box-like
DUF7885 PF25372 142 - 311 7.5e-17 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 740, 885
AccBSI CCGCTC 1 cut(s) 996
AciI CCGC 8 cut(s) 305, 531, 690, 816, 926, 954, 996, 1061
AclWI GGATC 3 cut(s) 109, 122, 844
AcuI CTGAAG 2 cut(s) 906, 1022
AfaI GTAC 1 cut(s) 800
AgsI TTSAA 3 cut(s) 385, 523, 932
Alw21I GWGCWC 2 cut(s) 1023, 1054
Alw26I GTCTC 2 cut(s) 209, 893
Alw44I GTGCAC 2 cut(s) 1019, 1050
AlwI GGATC 3 cut(s) 109, 122, 844
AlwNI CAGNNNCTG 1 cut(s) 501
AoxI GGCC 2 cut(s) 193, 330
ApaLI GTGCAC 2 cut(s) 1019, 1050
ApeKI GCWGC 2 cut(s) 274, 456
Asp700I GAANNNNTTC 1 cut(s) 979
AspS9I GGNCC 2 cut(s) 34, 675
AsuC2I CCSGG 1 cut(s) 834
AsuHPI GGTGA 1 cut(s) 16
AsuNHI GCTAGC 1 cut(s) 805
AvaII GGWCC 2 cut(s) 34, 675
BaeGI GKGCMC 2 cut(s) 1023, 1054
BamHI GGATCC 1 cut(s) 114
Bbv12I GWGCWC 2 cut(s) 1023, 1054
BbvI GCAGC 2 cut(s) 261, 443
BccI CCATC 3 cut(s) 52, 606, 629
BcgI CGANNNNNNTGC 2 cut(s) 783, 817
BciVI GTATCC 1 cut(s) 1043
BcnI CCSGG 1 cut(s) 834
BcoDI GTCTC 2 cut(s) 209, 893
BfaI CTAG 3 cut(s) 311, 728, 806
BfmI CTRYAG 2 cut(s) 275, 502
BfuI GTATCC 1 cut(s) 1043
BglI GCCNNNNNGGC 1 cut(s) 566
BglII AGATCT 1 cut(s) 667
BisI GCNGC 4 cut(s) 275, 457, 691, 997
BlsI GCNGC 4 cut(s) 276, 458, 692, 998
Bme1390I CCNGG 1 cut(s) 834
Bme18I GGWCC 2 cut(s) 34, 675
BmgT120I GGNCC 2 cut(s) 34, 675
BmiI GGNNCC 3 cut(s) 116, 677, 1065
BmrFI CCNGG 1 cut(s) 834
BmrI ACTGGG 1 cut(s) 767
BmsI GCATC 3 cut(s) 29, 169, 582
BmtI GCTAGC 1 cut(s) 809
BmuI ACTGGG 1 cut(s) 767
BpmI CTGGAG 1 cut(s) 193
Bpu10I CCTNAGC 1 cut(s) 970
BpuEI CTTGAG 1 cut(s) 769
BpuMI CCSGG 1 cut(s) 834
BsaBI GATNNNNATC 1 cut(s) 113
BsaJI CCNNGG 2 cut(s) 24, 561
Bse1I ACTGG 5 cut(s) 36, 37, 172, 740, 762
Bse3DI GCAATG 1 cut(s) 801
Bse8I GATNNNNATC 1 cut(s) 113
BseDI CCNNGG 2 cut(s) 24, 561
BseGI GGATG 4 cut(s) 20, 539, 617, 1069
BseJI GATNNNNATC 1 cut(s) 113
BseMI GCAATG 1 cut(s) 801
BseMII CTCAG 4 cut(s) 385, 685, 872, 984
BseNI ACTGG 5 cut(s) 36, 37, 172, 740, 762
BseRI GAGGAG 1 cut(s) 27
BseSI GKGCMC 2 cut(s) 1023, 1054
BseXI GCAGC 2 cut(s) 261, 443
BsgI GTGCAG 1 cut(s) 442
BshFI GGCC 2 cut(s) 195, 332
BsiHKAI GWGCWC 2 cut(s) 1023, 1054
BsiSI CCGG 1 cut(s) 833
BsmAI GTCTC 2 cut(s) 209, 893
BsmBI CGTCTC 1 cut(s) 209
BsmI GAATGC 1 cut(s) 979
BsnI GGCC 2 cut(s) 195, 332
Bsp1286I GDGCHC 2 cut(s) 1023, 1054
Bsp143I GATC 6 cut(s) 72, 114, 133, 367, 667, 836
Bsp19I CCATGG 1 cut(s) 24
BspACI CCGC 8 cut(s) 305, 531, 690, 816, 926, 954, 996, 1061
BspANI GGCC 2 cut(s) 195, 332
BspCNI CTCAG 4 cut(s) 384, 684, 873, 983
BspHI TCATGA 1 cut(s) 990
BspLI GGNNCC 3 cut(s) 116, 677, 1065
BspMAI CTGCAG 2 cut(s) 279, 506
BspOI GCTAGC 1 cut(s) 809
BspPI GGATC 3 cut(s) 109, 122, 844
BsrBI CCGCTC 1 cut(s) 996
BsrDI GCAATG 1 cut(s) 801
BsrI ACTGG 5 cut(s) 36, 37, 172, 740, 762
BssECI CCNNGG 2 cut(s) 24, 561
BssMI GATC 6 cut(s) 72, 114, 133, 367, 667, 836
BssT1I CCWWGG 2 cut(s) 24, 561
Bst4CI ACNGT 3 cut(s) 398, 1018, 1025
BstAPI GCANNNNNTGC 1 cut(s) 1058
BstC8I GCNNGC 1 cut(s) 807
BstDEI CTNAG 6 cut(s) 290, 371, 449, 671, 881, 970
BstDSI CCRYGG 1 cut(s) 24
BstF5I GGATG 4 cut(s) 20, 539, 617, 1069
BstKTI GATC 6 cut(s) 75, 117, 136, 370, 670, 839
BstMAI GTCTC 2 cut(s) 209, 893
BstMBI GATC 6 cut(s) 72, 114, 133, 367, 667, 836
BstMWI GCNNNNNNNGC 5 cut(s) 329, 566, 932, 1049, 1058
BstNSI RCATGY 1 cut(s) 969
BstSCI CCNGG 1 cut(s) 832
BstSFI CTRYAG 2 cut(s) 275, 502
BstSLI GKGCMC 2 cut(s) 1023, 1054
BstV1I GCAGC 2 cut(s) 261, 443
BstX2I RGATCY 2 cut(s) 114, 667
BstXI CCANNNNNNTGG 1 cut(s) 31
BstYI RGATCY 2 cut(s) 114, 667
BsuI GTATCC 1 cut(s) 1043
BsuRI GGCC 2 cut(s) 195, 332
BtgI CCRYGG 1 cut(s) 24
BtsCI GGATG 4 cut(s) 20, 539, 617, 1069
BtsI GCAGTG 4 cut(s) 330, 343, 474, 906
BtsIMutI CAGTG 9 cut(s) 44, 165, 330, 343, 474, 634, 755, 906, 1021
Cac8I GCNNGC 1 cut(s) 807
CaiI CAGNNNCTG 1 cut(s) 501
CciI TCATGA 1 cut(s) 990
Cfr13I GGNCC 2 cut(s) 34, 675
Csp6I GTAC 1 cut(s) 799
CspCI CAANNNNNGTGG 2 cut(s) 433, 468
CviAII CATG 6 cut(s) 25, 232, 350, 419, 966, 991
CviQI GTAC 1 cut(s) 799
DdeI CTNAG 6 cut(s) 290, 371, 449, 671, 881, 970
DpnI GATC 6 cut(s) 74, 116, 135, 369, 669, 838
DpnII GATC 6 cut(s) 72, 114, 133, 367, 667, 836
DraI TTTAAA 1 cut(s) 285
DrdI GACNNNNNNGTC 2 cut(s) 740, 885
DseDI GACNNNNNNGTC 2 cut(s) 740, 885
Eco130I CCWWGG 2 cut(s) 24, 561
Eco32I GATATC 1 cut(s) 91
Eco47I GGWCC 2 cut(s) 34, 675
Eco57I CTGAAG 2 cut(s) 906, 1022
EcoO109I RGGNCCY 1 cut(s) 675
EcoRV GATATC 1 cut(s) 91
EcoT14I CCWWGG 2 cut(s) 24, 561
ErhI CCWWGG 2 cut(s) 24, 561
Esp3I CGTCTC 1 cut(s) 209
FaeI CATG 6 cut(s) 28, 235, 353, 422, 969, 994
FatI CATG 6 cut(s) 24, 231, 349, 418, 965, 990
FauI CCCGC 2 cut(s) 809, 961
Fnu4HI GCNGC 4 cut(s) 275, 457, 691, 997
FokI GGATG 4 cut(s) 7, 546, 624, 1056
Fsp4HI GCNGC 4 cut(s) 275, 457, 691, 997
FspBI CTAG 3 cut(s) 311, 728, 806
GluI GCNGC 4 cut(s) 275, 457, 691, 997
GsuI CTGGAG 1 cut(s) 193
HaeIII GGCC 2 cut(s) 195, 332
HapII CCGG 1 cut(s) 833
Hin1II CATG 6 cut(s) 28, 235, 353, 422, 969, 994
HindIII AAGCTT 2 cut(s) 379, 509
HinfI GANTC 4 cut(s) 66, 498, 523, 944
HpaII CCGG 1 cut(s) 833
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 4 cut(s) 401, 745, 1021, 1052
Hpy188I TCNGA 4 cut(s) 48, 108, 591, 1005
Hpy188III TCNNGA 5 cut(s) 70, 665, 673, 972, 991
Hpy8I GTNNAC 4 cut(s) 401, 745, 1021, 1052
HpyAV CCTTC 5 cut(s) 56, 869, 930, 969, 1046
HpyCH4III ACNGT 3 cut(s) 398, 1018, 1025
HpyF10VI GCNNNNNNNGC 5 cut(s) 329, 566, 932, 1049, 1058
HpyF3I CTNAG 6 cut(s) 290, 371, 449, 671, 881, 970
Hsp92II CATG 6 cut(s) 28, 235, 353, 422, 969, 994
Kzo9I GATC 6 cut(s) 72, 114, 133, 367, 667, 836
LmnI GCTCC 1 cut(s) 100
Lsp1109I GCAGC 2 cut(s) 261, 443
LweI GCATC 3 cut(s) 29, 169, 582
MaeI CTAG 3 cut(s) 311, 728, 806
MaeIII GTNAC 4 cut(s) 354, 547, 597, 753
MalI GATC 6 cut(s) 74, 116, 135, 369, 669, 838
MbiI CCGCTC 1 cut(s) 996
MboI GATC 6 cut(s) 72, 114, 133, 367, 667, 836
MboII GAAGA 3 cut(s) 61, 67, 884
MflI RGATCY 2 cut(s) 114, 667
MhlI GDGCHC 2 cut(s) 1023, 1054
MluCI AATT 1 cut(s) 387
MroXI GAANNNNTTC 1 cut(s) 979
MseI TTAA 5 cut(s) 284, 513, 852, 1010, 1081
MslI CAYNNNNRTG 1 cut(s) 348
MspA1I CMGCKG 1 cut(s) 926
MspI CCGG 1 cut(s) 833
MspR9I CCNGG 1 cut(s) 834
Mva1269I GAATGC 1 cut(s) 979
MwoI GCNNNNNNNGC 5 cut(s) 329, 566, 932, 1049, 1058
NciI CCSGG 1 cut(s) 834
NcoI CCATGG 1 cut(s) 24
NdeII GATC 6 cut(s) 72, 114, 133, 367, 667, 836
NheI GCTAGC 1 cut(s) 805
NlaIII CATG 6 cut(s) 28, 235, 353, 422, 969, 994
NlaIV GGNNCC 3 cut(s) 116, 677, 1065
NmuCI GTSAC 2 cut(s) 597, 753
NspI RCATGY 1 cut(s) 969
PagI TCATGA 1 cut(s) 990
PctI GAATGC 1 cut(s) 979
PdmI GAANNNNTTC 1 cut(s) 979
PfeI GAWTC 4 cut(s) 66, 498, 523, 944
PkrI GCNGC 4 cut(s) 276, 458, 692, 998
PpuMI RGGWCCY 1 cut(s) 675
Psp5II RGGWCCY 1 cut(s) 675
PspN4I GGNNCC 3 cut(s) 116, 677, 1065
PspPI GGNCC 2 cut(s) 34, 675
PspPPI RGGWCCY 1 cut(s) 675
PstI CTGCAG 2 cut(s) 279, 506
PstNI CAGNNNCTG 1 cut(s) 501
PsuI RGATCY 2 cut(s) 114, 667
RsaI GTAC 1 cut(s) 800
RsaNI GTAC 1 cut(s) 799
RseI CAYNNNNRTG 1 cut(s) 348
SaqAI TTAA 5 cut(s) 284, 513, 852, 1010, 1081
SatI GCNGC 4 cut(s) 275, 457, 691, 997
Sau3AI GATC 6 cut(s) 72, 114, 133, 367, 667, 836
Sau96I GGNCC 2 cut(s) 34, 675
ScrFI CCNGG 1 cut(s) 834
SduI GDGCHC 2 cut(s) 1023, 1054
SfaNI GCATC 3 cut(s) 29, 169, 582
SfcI CTRYAG 2 cut(s) 275, 502
SinI GGWCC 2 cut(s) 34, 675
SmiMI CAYNNNNRTG 1 cut(s) 348
SmlI CTYRAG 1 cut(s) 748
SmoI CTYRAG 1 cut(s) 748
Sse9I AATT 1 cut(s) 387
SsiI CCGC 8 cut(s) 305, 531, 690, 816, 926, 954, 996, 1061
SspMI CTAG 3 cut(s) 311, 728, 806
StyD4I CCNGG 1 cut(s) 832
StyI CCWWGG 2 cut(s) 24, 561
TaaI ACNGT 3 cut(s) 398, 1018, 1025
TaqI TCGA 1 cut(s) 71
TasI AATT 1 cut(s) 387
TatI WGTACW 1 cut(s) 798
TauI GCSGC 2 cut(s) 693, 999
TfiI GAWTC 4 cut(s) 66, 498, 523, 944
Tru1I TTAA 5 cut(s) 284, 513, 852, 1010, 1081
Tru9I TTAA 5 cut(s) 284, 513, 852, 1010, 1081
TscAI CASTG 9 cut(s) 44, 172, 330, 350, 481, 634, 762, 913, 1028
TseFI GTSAC 2 cut(s) 597, 753
TseI GCWGC 2 cut(s) 274, 456
Tsp45I GTSAC 2 cut(s) 597, 753
TspDTI ATGAA 5 cut(s) 68, 248, 453, 885, 936
TspGWI ACGGA 1 cut(s) 197
TspRI CASTG 9 cut(s) 44, 172, 330, 350, 481, 634, 762, 913, 1028
VneI GTGCAC 2 cut(s) 1019, 1050
VpaK11BI GGWCC 2 cut(s) 34, 675
XceI RCATGY 1 cut(s) 969
XmnI GAANNNNTTC 1 cut(s) 979
XspI CTAG 3 cut(s) 311, 728, 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.