f-box protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G21410 AT1G21410 AT1G77000 AT1G77000 AT1G77000 AT1G77000 |
| fragaria_vesca | FvH4_2g15180 FvH4_2g15180 FvH4_2g15180 |
| malus_domestica | MD05G1010400.v1.1 MD10G1009000.v1.1 |
| prunus_persica | Prupe.8G012800_v2.0.a1 Prupe.8G012800_v2.0.a1 Prupe.8G012800_v2.0.a1 |
| pyrus_communis | pycom05g00540 pycom05g00550 pycom10g00540 |
| rosa_chinensis | RchiOBHm_Chr6g0277841 |
| rosa_laevigata | RLG00000013264 |
| rosa_multiflora | Rmu_co8341071.1_g000001 Rmu_sc0001874.1_g000005 |
| rosa_roxburghii | Rroxscaffold_7G00190860 |
| rosa_rugosa | Rorug06G0112000 |
| rosa_samantha | Rh6AG222800 Rh6BG226300 Rh6CG228700 Rh6DG219800 |
| rosa_wichuraiana | Rw6G019470 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 992 |
| Acc36I | ACCTGC | 1 cut(s) | 992 |
| AccBSI | CCGCTC | 1 cut(s) | 417 |
| AciI | CCGC | 4 cut(s) | 415, 471, 1066, 1077 |
| AclWI | GGATC | 1 cut(s) | 765 |
| AcoI | YGGCCR | 1 cut(s) | 592 |
| AcuI | CTGAAG | 1 cut(s) | 359 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 234, 925 |
| AgsI | TTSAA | 7 cut(s) | 37, 332, 403, 503, 532, 950, 1024 |
| AhlI | ACTAGT | 1 cut(s) | 142 |
| AjnI | CCWGG | 3 cut(s) | 381, 869, 1056 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1016, 1048 |
| AluBI | AGCT | 7 cut(s) | 55, 121, 170, 399, 406, 434, 1094 |
| AluI | AGCT | 7 cut(s) | 55, 121, 170, 399, 406, 434, 1094 |
| Alw21I | GWGCWC | 3 cut(s) | 33, 123, 926 |
| Alw26I | GTCTC | 3 cut(s) | 227, 451, 719 |
| Alw44I | GTGCAC | 1 cut(s) | 922 |
| AlwI | GGATC | 1 cut(s) | 765 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 136, 173, 382, 619 |
| AoxI | GGCC | 3 cut(s) | 592, 778, 825 |
| ApaLI | GTGCAC | 1 cut(s) | 922 |
| ApeKI | GCWGC | 3 cut(s) | 563, 854, 1073 |
| AspLEI | GCGC | 1 cut(s) | 1063 |
| AspS9I | GGNCC | 4 cut(s) | 262, 379, 385, 826 |
| AsuHPI | GGTGA | 3 cut(s) | 172, 659, 925 |
| AvaII | GGWCC | 3 cut(s) | 262, 379, 385 |
| BaeGI | GKGCMC | 1 cut(s) | 926 |
| BanII | GRGCYC | 2 cut(s) | 123, 900 |
| BbsI | GAAGAC | 1 cut(s) | 1000 |
| Bbv12I | GWGCWC | 3 cut(s) | 33, 123, 926 |
| BbvI | GCAGC | 3 cut(s) | 550, 866, 1060 |
| BccI | CCATC | 2 cut(s) | 109, 979 |
| BceAI | ACGGC | 2 cut(s) | 579, 942 |
| BciT130I | CCWGG | 3 cut(s) | 383, 871, 1058 |
| BclI | TGATCA | 2 cut(s) | 151, 162 |
| BcoDI | GTCTC | 3 cut(s) | 227, 451, 719 |
| BcuI | ACTAGT | 1 cut(s) | 142 |
| BfaI | CTAG | 1 cut(s) | 143 |
| BfmI | CTRYAG | 2 cut(s) | 601, 852 |
| BfuAI | ACCTGC | 1 cut(s) | 992 |
| BisI | GCNGC | 4 cut(s) | 564, 855, 1074, 1077 |
| BlsI | GCNGC | 4 cut(s) | 565, 856, 1075, 1078 |
| Bme1390I | CCNGG | 3 cut(s) | 383, 871, 1058 |
| Bme18I | GGWCC | 3 cut(s) | 262, 379, 385 |
| BmgT120I | GGNCC | 4 cut(s) | 262, 379, 385, 826 |
| BmrFI | CCNGG | 3 cut(s) | 383, 871, 1058 |
| BmsI | GCATC | 4 cut(s) | 187, 222, 575, 668 |
| BoxI | GACNNNNGTC | 1 cut(s) | 143 |
| BpiI | GAAGAC | 1 cut(s) | 1000 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 184, 216 |
| BpmI | CTGGAG | 1 cut(s) | 195 |
| Bpu10I | CCTNAGC | 2 cut(s) | 389, 430 |
| BpuEI | CTTGAG | 2 cut(s) | 5, 884 |
| BsaJI | CCNNGG | 1 cut(s) | 775 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 110, 140 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 234, 925 |
| Bse1I | ACTGG | 1 cut(s) | 919 |
| Bse3DI | GCAATG | 5 cut(s) | 351, 492, 578, 819, 864 |
| BseBI | CCWGG | 3 cut(s) | 383, 871, 1058 |
| BseDI | CCNNGG | 1 cut(s) | 775 |
| BseGI | GGATG | 3 cut(s) | 557, 683, 1031 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 234, 925 |
| BseMI | GCAATG | 5 cut(s) | 351, 492, 578, 819, 864 |
| BseMII | CTCAG | 3 cut(s) | 18, 703, 758 |
| BseNI | ACTGG | 1 cut(s) | 919 |
| BseSI | GKGCMC | 1 cut(s) | 926 |
| BseXI | GCAGC | 3 cut(s) | 550, 866, 1060 |
| BshFI | GGCC | 3 cut(s) | 594, 780, 827 |
| BsiHKAI | GWGCWC | 3 cut(s) | 33, 123, 926 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 234, 925 |
| BsmAI | GTCTC | 3 cut(s) | 227, 451, 719 |
| BsmBI | CGTCTC | 1 cut(s) | 227 |
| BsmI | GAATGC | 1 cut(s) | 482 |
| BsnI | GGCC | 3 cut(s) | 594, 780, 827 |
| Bsp1286I | GDGCHC | 4 cut(s) | 33, 123, 900, 926 |
| Bsp143I | GATC | 4 cut(s) | 151, 162, 370, 770 |
| BspACI | CCGC | 4 cut(s) | 415, 471, 1066, 1077 |
| BspANI | GGCC | 3 cut(s) | 594, 780, 827 |
| BspCNI | CTCAG | 3 cut(s) | 19, 702, 759 |
| BspHI | TCATGA | 1 cut(s) | 1008 |
| BspMAI | CTGCAG | 2 cut(s) | 605, 856 |
| BspMI | ACCTGC | 1 cut(s) | 992 |
| BspPI | GGATC | 1 cut(s) | 765 |
| BsrBI | CCGCTC | 1 cut(s) | 417 |
| BsrDI | GCAATG | 5 cut(s) | 351, 492, 578, 819, 864 |
| BsrI | ACTGG | 1 cut(s) | 919 |
| BssECI | CCNNGG | 1 cut(s) | 775 |
| BssMI | GATC | 4 cut(s) | 151, 162, 370, 770 |
| BssT1I | CCWWGG | 1 cut(s) | 775 |
| Bst2UI | CCWGG | 3 cut(s) | 383, 871, 1058 |
| Bst4CI | ACNGT | 3 cut(s) | 160, 697, 791 |
| BstC8I | GCNNGC | 2 cut(s) | 585, 852 |
| BstDEI | CTNAG | 6 cut(s) | 27, 279, 389, 430, 689, 767 |
| BstF5I | GGATG | 3 cut(s) | 557, 683, 1031 |
| BstHHI | GCGC | 1 cut(s) | 1063 |
| BstKTI | GATC | 4 cut(s) | 154, 165, 373, 773 |
| BstMAI | GTCTC | 3 cut(s) | 227, 451, 719 |
| BstMBI | GATC | 4 cut(s) | 151, 162, 370, 770 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 127, 584, 600, 950, 1058 |
| BstNI | CCWGG | 3 cut(s) | 383, 871, 1058 |
| BstNSI | RCATGY | 1 cut(s) | 1050 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 143 |
| BstSCI | CCNGG | 3 cut(s) | 381, 869, 1056 |
| BstSFI | CTRYAG | 2 cut(s) | 601, 852 |
| BstSLI | GKGCMC | 1 cut(s) | 926 |
| BstV1I | GCAGC | 3 cut(s) | 550, 866, 1060 |
| BstV2I | GAAGAC | 1 cut(s) | 1000 |
| BstX2I | RGATCY | 1 cut(s) | 770 |
| BstYI | RGATCY | 1 cut(s) | 770 |
| BsuRI | GGCC | 3 cut(s) | 594, 780, 827 |
| BtsCI | GGATG | 3 cut(s) | 557, 683, 1031 |
| BtsI | GCAGTG | 4 cut(s) | 610, 620, 960, 1068 |
| BtsIMutI | CAGTG | 7 cut(s) | 408, 493, 610, 620, 926, 960, 1068 |
| BveI | ACCTGC | 1 cut(s) | 992 |
| Cac8I | GCNNGC | 2 cut(s) | 585, 852 |
| CaiI | CAGNNNCTG | 4 cut(s) | 136, 173, 382, 619 |
| CciI | TCATGA | 1 cut(s) | 1008 |
| CfoI | GCGC | 1 cut(s) | 1063 |
| Cfr13I | GGNCC | 4 cut(s) | 262, 379, 385, 826 |
| CviAII | CATG | 5 cut(s) | 234, 250, 437, 1009, 1047 |
| DdeI | CTNAG | 6 cut(s) | 27, 279, 389, 430, 689, 767 |
| DpnI | GATC | 4 cut(s) | 153, 164, 372, 772 |
| DpnII | GATC | 4 cut(s) | 151, 162, 370, 770 |
| EaeI | YGGCCR | 1 cut(s) | 592 |
| Ecl136II | GAGCTC | 1 cut(s) | 121 |
| Eco130I | CCWWGG | 1 cut(s) | 775 |
| Eco24I | GRGCYC | 2 cut(s) | 123, 900 |
| Eco47I | GGWCC | 3 cut(s) | 262, 379, 385 |
| Eco53kI | GAGCTC | 1 cut(s) | 121 |
| Eco57I | CTGAAG | 1 cut(s) | 359 |
| EcoICRI | GAGCTC | 1 cut(s) | 121 |
| EcoO109I | RGGNCCY | 1 cut(s) | 379 |
| EcoRII | CCWGG | 3 cut(s) | 381, 869, 1056 |
| EcoT14I | CCWWGG | 1 cut(s) | 775 |
| EcoT38I | GRGCYC | 2 cut(s) | 123, 900 |
| ErhI | CCWWGG | 1 cut(s) | 775 |
| Esp3I | CGTCTC | 1 cut(s) | 227 |
| FaeI | CATG | 5 cut(s) | 237, 253, 440, 1012, 1050 |
| FatI | CATG | 5 cut(s) | 233, 249, 436, 1008, 1046 |
| FauNDI | CATATG | 1 cut(s) | 673 |
| FbaI | TGATCA | 2 cut(s) | 151, 162 |
| Fnu4HI | GCNGC | 4 cut(s) | 564, 855, 1074, 1077 |
| FokI | GGATG | 3 cut(s) | 564, 690, 1018 |
| FriOI | GRGCYC | 2 cut(s) | 123, 900 |
| Fsp4HI | GCNGC | 4 cut(s) | 564, 855, 1074, 1077 |
| FspBI | CTAG | 1 cut(s) | 143 |
| GlaI | GCGC | 1 cut(s) | 1062 |
| GluI | GCNGC | 4 cut(s) | 564, 855, 1074, 1077 |
| GsuI | CTGGAG | 1 cut(s) | 195 |
| HaeIII | GGCC | 3 cut(s) | 594, 780, 827 |
| HhaI | GCGC | 1 cut(s) | 1063 |
| Hin1II | CATG | 5 cut(s) | 237, 253, 440, 1012, 1050 |
| Hin6I | GCGC | 1 cut(s) | 1061 |
| HinP1I | GCGC | 1 cut(s) | 1061 |
| HincII | GTYRAC | 1 cut(s) | 700 |
| HindII | GTYRAC | 1 cut(s) | 700 |
| HindIII | AAGCTT | 1 cut(s) | 397 |
| HinfI | GANTC | 5 cut(s) | 133, 177, 622, 866, 962 |
| HphI | GGTGA | 3 cut(s) | 172, 659, 925 |
| Hpy166II | GTNNAC | 3 cut(s) | 285, 700, 924 |
| Hpy188I | TCNGA | 8 cut(s) | 114, 138, 156, 348, 571, 621, 692, 768 |
| Hpy188III | TCNNGA | 7 cut(s) | 22, 174, 314, 500, 901, 990, 1009 |
| Hpy8I | GTNNAC | 3 cut(s) | 285, 700, 924 |
| HpyAV | CCTTC | 6 cut(s) | 70, 74, 78, 97, 887, 948 |
| HpyCH4III | ACNGT | 3 cut(s) | 160, 697, 791 |
| HpyCH4IV | ACGT | 1 cut(s) | 310 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 127, 584, 600, 950, 1058 |
| HpyF3I | CTNAG | 6 cut(s) | 27, 279, 389, 430, 689, 767 |
| HpySE526I | ACGT | 1 cut(s) | 310 |
| Hsp92II | CATG | 5 cut(s) | 237, 253, 440, 1012, 1050 |
| HspAI | GCGC | 1 cut(s) | 1061 |
| Ksp22I | TGATCA | 2 cut(s) | 151, 162 |
| Kzo9I | GATC | 4 cut(s) | 151, 162, 370, 770 |
| LmnI | GCTCC | 4 cut(s) | 118, 126, 280, 422 |
| Lsp1109I | GCAGC | 3 cut(s) | 550, 866, 1060 |
| LweI | GCATC | 4 cut(s) | 187, 222, 575, 668 |
| MaeI | CTAG | 1 cut(s) | 143 |
| MaeII | ACGT | 1 cut(s) | 310 |
| MaeIII | GTNAC | 3 cut(s) | 239, 488, 596 |
| MalI | GATC | 4 cut(s) | 153, 164, 372, 772 |
| MbiI | CCGCTC | 1 cut(s) | 417 |
| MboI | GATC | 4 cut(s) | 151, 162, 370, 770 |
| MboII | GAAGA | 4 cut(s) | 344, 365, 853, 1005 |
| MflI | RGATCY | 1 cut(s) | 770 |
| MhlI | GDGCHC | 4 cut(s) | 33, 123, 900, 926 |
| MluCI | AATT | 1 cut(s) | 527 |
| MlyI | GAGTC | 2 cut(s) | 186, 956 |
| MmeI | TCCRAC | 2 cut(s) | 170, 634 |
| MnlI | CCTC | 9 cut(s) | 29, 239, 631, 698, 771, 791, 883, 1013, 1095 |
| MseI | TTAA | 2 cut(s) | 462, 539 |
| MslI | CAYNNNNRTG | 1 cut(s) | 676 |
| MspA1I | CMGCKG | 1 cut(s) | 471 |
| MspR9I | CCNGG | 3 cut(s) | 383, 871, 1058 |
| Mva1269I | GAATGC | 1 cut(s) | 482 |
| MvaI | CCWGG | 3 cut(s) | 383, 871, 1058 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 127, 584, 600, 950, 1058 |
| NdeI | CATATG | 1 cut(s) | 673 |
| NdeII | GATC | 4 cut(s) | 151, 162, 370, 770 |
| NlaIII | CATG | 5 cut(s) | 237, 253, 440, 1012, 1050 |
| NmuCI | GTSAC | 1 cut(s) | 488 |
| NspI | RCATGY | 1 cut(s) | 1050 |
| PagI | TCATGA | 1 cut(s) | 1008 |
| PaqCI | CACCTGC | 1 cut(s) | 992 |
| PctI | GAATGC | 1 cut(s) | 482 |
| PfeI | GAWTC | 3 cut(s) | 133, 622, 866 |
| PfoI | TCCNGGA | 2 cut(s) | 381, 869 |
| PkrI | GCNGC | 4 cut(s) | 565, 856, 1075, 1078 |
| PleI | GAGTC | 2 cut(s) | 185, 956 |
| PpsI | GAGTC | 2 cut(s) | 185, 956 |
| PpuMI | RGGWCCY | 1 cut(s) | 379 |
| PshAI | GACNNNNGTC | 1 cut(s) | 143 |
| Psp124BI | GAGCTC | 1 cut(s) | 123 |
| Psp5II | RGGWCCY | 1 cut(s) | 379 |
| Psp6I | CCWGG | 3 cut(s) | 381, 869, 1056 |
| PspGI | CCWGG | 3 cut(s) | 381, 869, 1056 |
| PspPI | GGNCC | 4 cut(s) | 262, 379, 385, 826 |
| PspPPI | RGGWCCY | 1 cut(s) | 379 |
| PstI | CTGCAG | 2 cut(s) | 605, 856 |
| PstNI | CAGNNNCTG | 4 cut(s) | 136, 173, 382, 619 |
| PsuI | RGATCY | 1 cut(s) | 770 |
| RseI | CAYNNNNRTG | 1 cut(s) | 676 |
| SacI | GAGCTC | 1 cut(s) | 123 |
| SaqAI | TTAA | 2 cut(s) | 462, 539 |
| SatI | GCNGC | 4 cut(s) | 564, 855, 1074, 1077 |
| Sau3AI | GATC | 4 cut(s) | 151, 162, 370, 770 |
| Sau96I | GGNCC | 4 cut(s) | 262, 379, 385, 826 |
| SchI | GAGTC | 2 cut(s) | 186, 956 |
| ScrFI | CCNGG | 3 cut(s) | 383, 871, 1058 |
| SduI | GDGCHC | 4 cut(s) | 33, 123, 900, 926 |
| SfaNI | GCATC | 4 cut(s) | 187, 222, 575, 668 |
| SfcI | CTRYAG | 2 cut(s) | 601, 852 |
| SinI | GGWCC | 3 cut(s) | 262, 379, 385 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 676 |
| SmlI | CTYRAG | 2 cut(s) | 20, 899 |
| SmoI | CTYRAG | 2 cut(s) | 20, 899 |
| SpeI | ACTAGT | 1 cut(s) | 142 |
| Sse9I | AATT | 1 cut(s) | 527 |
| SsiI | CCGC | 4 cut(s) | 415, 471, 1066, 1077 |
| SspMI | CTAG | 1 cut(s) | 143 |
| SstI | GAGCTC | 1 cut(s) | 123 |
| StyD4I | CCNGG | 3 cut(s) | 381, 869, 1056 |
| StyI | CCWWGG | 1 cut(s) | 775 |
| TaaI | ACNGT | 3 cut(s) | 160, 697, 791 |
| TaiI | ACGT | 1 cut(s) | 313 |
| TaqI | TCGA | 1 cut(s) | 147 |
| TasI | AATT | 1 cut(s) | 527 |
| TauI | GCSGC | 1 cut(s) | 1079 |
| TfiI | GAWTC | 3 cut(s) | 133, 622, 866 |
| Tru1I | TTAA | 2 cut(s) | 462, 539 |
| Tru9I | TTAA | 2 cut(s) | 462, 539 |
| TscAI | CASTG | 7 cut(s) | 415, 493, 610, 620, 926, 960, 1075 |
| TseFI | GTSAC | 1 cut(s) | 488 |
| TseI | GCWGC | 3 cut(s) | 563, 854, 1073 |
| Tsp45I | GTSAC | 1 cut(s) | 488 |
| TspDTI | ATGAA | 1 cut(s) | 266 |
| TspGWI | ACGGA | 1 cut(s) | 1024 |
| TspRI | CASTG | 7 cut(s) | 415, 493, 610, 620, 926, 960, 1075 |
| VneI | GTGCAC | 1 cut(s) | 922 |
| VpaK11BI | GGWCC | 3 cut(s) | 262, 379, 385 |
| XceI | RCATGY | 1 cut(s) | 1050 |
| XspI | CTAG | 1 cut(s) | 143 |