Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0005717

Physical Location & Seq

Genomic Coordinates Forward (+)

714565 .. 715401

Gene Structure 837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g00550.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAGTTTGGCATACGGATGCCCTGAACTCAGAACTGTTGATTTGTGTGGCTGTGTCCAAATATCAGATGACAGTGTGATTGCTTTGGCAAATAGGTGTCCTCATTTGCAATCGCTTGGCCTTTACTACTGTAAGAACATTACAGACAGAGCAATGTATTCCTTGGCCCAGAGTCTAGTGAAGAACAAGCCTGCGGCAATGTGGGAATCCCGGAAAACCAGGAATGACGAGGAAGGGCTTAGGACTCTCAACATCAGCCAATGCACAGCGCTCACCCCTTCTGCTGTTCAGGCTGTGTGCGATTCATTCCCTGCCCTTCACACCTGCTCTGGAAGGCATTCCCTCAACTTTAGCGGCTGTATGAATTTGACGTCAGTGCATTGTGCCTGTGCTGTCCAAGCTCACCGCACCGCCAACGCCTTTCCTCATTCAGCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0008104 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016973 GO:0031090 GO:0031503 GO:0031965 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0034613 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DUF5311 Nup160

Protein Analysis

147

Amino Acids

15.86

Weight (kDa)

8.03

Isoelectric Point (pI)

57.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21410 AT1G21410 AT1G77000 AT1G77000 AT1G77000 AT1G77000
fragaria_vesca	FvH4_2g15180 FvH4_2g15180 FvH4_2g15180
malus_domestica	MD05G1010400.v1.1 MD10G1009000.v1.1
prunus_persica	Prupe.8G012800_v2.0.a1 Prupe.8G012800_v2.0.a1 Prupe.8G012800_v2.0.a1
pyrus_communis	pycom05g00540 pycom05g00550 pycom10g00540
rosa_chinensis	RchiOBHm_Chr6g0277841
rosa_laevigata	RLG00000013264
rosa_multiflora	Rmu_co8341071.1_g000001 Rmu_sc0001874.1_g000005
rosa_roxburghii	Rroxscaffold_7G00190860
rosa_rugosa	Rorug06G0112000
rosa_samantha	Rh6AG222800 Rh6BG226300 Rh6CG228700 Rh6DG219800
rosa_wichuraiana	Rw6G019470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	332
AatII	GACGTC	1 cut(s)	374
Acc36I	ACCTGC	1 cut(s)	332
AciI	CCGC	4 cut(s)	194, 354, 406, 411
AcsI	RAATTY	1 cut(s)	364
AcyI	GRCGYC	1 cut(s)	371
AfeI	AGCGCT	1 cut(s)	270
AjnI	CCWGG	1 cut(s)	218
AluBI	AGCT	2 cut(s)	401, 434
AluI	AGCT	2 cut(s)	401, 434
Aor51HI	AGCGCT	1 cut(s)	270
AoxI	GGCC	2 cut(s)	118, 165
ApoI	RAATTY	1 cut(s)	364
Asp700I	GAANNNNTTC	1 cut(s)	337
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	1 cut(s)	166
AsuC2I	CCSGG	1 cut(s)	211
AsuHPI	GGTGA	2 cut(s)	265, 395
BciT130I	CCWGG	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	211
BfaI	CTAG	1 cut(s)	176
BfoI	RGCGCY	1 cut(s)	272
BfuAI	ACCTGC	1 cut(s)	332
BisI	GCNGC	2 cut(s)	195, 355
BlsI	GCNGC	2 cut(s)	196, 356
Bme1390I	CCNGG	2 cut(s)	211, 220
BmgT120I	GGNCC	1 cut(s)	166
BmrFI	CCNGG	2 cut(s)	211, 220
BmsI	GCATC	1 cut(s)	8
Bpu10I	CCTNAGC	1 cut(s)	239
BpuMI	CCSGG	1 cut(s)	211
BsaHI	GRCGYC	1 cut(s)	371
BsaJI	CCNNGG	1 cut(s)	162
Bse3DI	GCAATG	2 cut(s)	159, 204
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	1 cut(s)	23
BseMI	GCAATG	2 cut(s)	159, 204
BseMII	CTCAG	1 cut(s)	43
BshFI	GGCC	2 cut(s)	120, 167
BsiSI	CCGG	1 cut(s)	211
BsmI	GAATGC	1 cut(s)	337
BsnI	GGCC	2 cut(s)	120, 167
BspACI	CCGC	4 cut(s)	194, 354, 406, 411
BspANI	GGCC	2 cut(s)	120, 167
BspCNI	CTCAG	1 cut(s)	42
BspMI	ACCTGC	1 cut(s)	332
BsrDI	GCAATG	2 cut(s)	159, 204
BssECI	CCNNGG	1 cut(s)	162
BssNI	GRCGYC	1 cut(s)	371
BssT1I	CCWWGG	1 cut(s)	162
Bst2UI	CCWGG	1 cut(s)	220
Bst4CI	ACNGT	3 cut(s)	37, 74, 131
BstACI	GRCGYC	1 cut(s)	371
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	2 cut(s)	29, 239
BstF5I	GGATG	1 cut(s)	23
BstH2I	RGCGCY	1 cut(s)	272
BstHHI	GCGC	1 cut(s)	271
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 398
BstNI	CCWGG	1 cut(s)	220
BstSCI	CCNGG	2 cut(s)	209, 218
BsuRI	GGCC	2 cut(s)	120, 167
BtsCI	GGATG	1 cut(s)	23
BtsIMutI	CAGTG	2 cut(s)	79, 381
BveI	ACCTGC	1 cut(s)	332
Cac8I	GCNNGC	1 cut(s)	192
CfoI	GCGC	1 cut(s)	271
Cfr13I	GGNCC	1 cut(s)	166
DdeI	CTNAG	2 cut(s)	29, 239
Eco130I	CCWWGG	1 cut(s)	162
Eco47III	AGCGCT	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	218
EcoT14I	CCWWGG	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	162
FaiI	YATR	2 cut(s)	13, 362
Fnu4HI	GCNGC	2 cut(s)	195, 355
FokI	GGATG	1 cut(s)	30
Fsp4HI	GCNGC	2 cut(s)	195, 355
FspBI	CTAG	1 cut(s)	176
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	2 cut(s)	195, 355
HaeII	RGCGCY	1 cut(s)	272
HaeIII	GGCC	2 cut(s)	120, 167
HapII	CCGG	1 cut(s)	211
HhaI	GCGC	1 cut(s)	271
Hin1I	GRCGYC	1 cut(s)	371
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HinfI	GANTC	4 cut(s)	172, 206, 244, 302
HpaII	CCGG	1 cut(s)	211
HphI	GGTGA	2 cut(s)	265, 395
Hpy188I	TCNGA	2 cut(s)	32, 67
Hpy188III	TCNNGA	1 cut(s)	330
HpyAV	CCTTC	4 cut(s)	227, 288, 326, 327
HpyCH4III	ACNGT	3 cut(s)	37, 74, 131
HpyCH4IV	ACGT	1 cut(s)	371
HpyCH4V	TGCA	3 cut(s)	109, 264, 379
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 398
HpyF3I	CTNAG	2 cut(s)	29, 239
HpySE526I	ACGT	1 cut(s)	371
Hsp92I	GRCGYC	1 cut(s)	371
HspAI	GCGC	1 cut(s)	269
LweI	GCATC	1 cut(s)	8
MaeI	CTAG	1 cut(s)	176
MaeII	ACGT	1 cut(s)	371
MboII	GAAGA	1 cut(s)	193
MluCI	AATT	1 cut(s)	364
MlyI	GAGTC	2 cut(s)	181, 238
MnlI	CCTC	4 cut(s)	111, 223, 353, 435
MroXI	GAANNNNTTC	1 cut(s)	337
MslI	CAYNNNNRTG	1 cut(s)	16
MspI	CCGG	1 cut(s)	211
MspR9I	CCNGG	2 cut(s)	211, 220
Mva1269I	GAATGC	1 cut(s)	337
MvaI	CCWGG	1 cut(s)	220
MwoI	GCNNNNNNNGC	2 cut(s)	290, 398
NciI	CCSGG	1 cut(s)	211
PaqCI	CACCTGC	1 cut(s)	332
PctI	GAATGC	1 cut(s)	337
PdmI	GAANNNNTTC	1 cut(s)	337
PfeI	GAWTC	2 cut(s)	206, 302
PfoI	TCCNGGA	1 cut(s)	209
PkrI	GCNGC	2 cut(s)	196, 356
PleI	GAGTC	2 cut(s)	180, 238
PpsI	GAGTC	2 cut(s)	180, 238
Psp6I	CCWGG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	218
PspPI	GGNCC	1 cut(s)	166
RseI	CAYNNNNRTG	1 cut(s)	16
SatI	GCNGC	2 cut(s)	195, 355
Sau96I	GGNCC	1 cut(s)	166
SchI	GAGTC	2 cut(s)	181, 238
ScrFI	CCNGG	2 cut(s)	211, 220
SetI	ASST	5 cut(s)	98, 326, 374, 403, 436
SfaNI	GCATC	1 cut(s)	8
SmiMI	CAYNNNNRTG	1 cut(s)	16
Sse9I	AATT	1 cut(s)	364
SsiI	CCGC	4 cut(s)	194, 354, 406, 411
SspMI	CTAG	1 cut(s)	176
StyD4I	CCNGG	2 cut(s)	209, 218
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	3 cut(s)	37, 74, 131
TaiI	ACGT	1 cut(s)	374
TasI	AATT	1 cut(s)	364
TauI	GCSGC	2 cut(s)	197, 357
TfiI	GAWTC	2 cut(s)	206, 302
TscAI	CASTG	2 cut(s)	79, 381
TspDTI	ATGAA	2 cut(s)	294, 377
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	2 cut(s)	79, 381
XapI	RAATTY	1 cut(s)	364
XmnI	GAANNNNTTC	1 cut(s)	337
XspI	CTAG	1 cut(s)	176
ZraI	GACGTC	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.