Rh6CG228700

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0005717
Physical Location & Seq
Reverse (-)
38312219 .. 38315334
3116 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG228700.1

Sequence Viewer

Length: 1050 bp
ATGACTGGTGGTGGGAAAGTGAAAATGGAAGGAAGGGTAATGACAGATTGGAAGGATATTCCGATGGAGCTCCTGTTGCAGATTCTGACACTTGTCGATGATCAGACGGTGATCACAGCTTCTGGAGTCTGTCGTGGTTGGAGAGATGCTATTTGCTTGGGCCTCACTCGTCTCTCCCTCTCATGGTGTAACAAGAACATGAACAACTTGGTCCTATCTCTTGCTCCTAAGTTTACAAGGTTGCAAACTCTAATACTACGTCAGGATAAACCCCAACTTGAAGATAATGCTGTTCAGAGCATTGCAAACTTCTGTTATGATCTTCAGGTCCTGGACCTTAGCAAAAGCTTCAAGCTCACTGACCACTCCTTGTATGCCTTAGCTCATGGGTGTCCTAATCTTACGAGACTCAACATCAGCGGTTGTTCTGCATTCAGTGACATTGCTCTTGAATATCTGGCTGGATTTTGCCCAAAATTGAAAGTATTAAATCTTTGTGGATGTGTCAGGGCTGCATCAGATAGGGCATTGCAGGCTATTGGCCGTTACTGCAGTGAGTTGCAGTGTCTGAATCTCGGTTGGTGTGAGGAAGTCGGTGATGTTGGAGTTATGAGTTTGGCATATGGATGCCCTGACCTCAGAACTGTTGACTTGTGCGGCTGTCTCCAAATAACAGATGACAGCGTGGTTGCTTTGGCAAACGGGTGTCCTCATCTGAGATCCCTTGGCCTTTACTACTGTCAAAACATTACAGACAAGGCAATGTATTCTTTGGCCCAGAGTGTAGTGAAGAACAAGCCTGCAGCAATGTGGGAATCCAGGAAAAGCAGGAATGATGAGGAAGGGCTCAAGACGCTCAACATCAGCCAGTGCACGGCACTCACCCCTTCTGCTGTTCAAGCAGTGTGCGACTCCTTTCCATCACTTCACACCTGCTCTGGAAGGCACTCCCTCATCATGAGTGGCTGTTTGAACTTGACATCCGTGCATTGTGCATGTGCTGTCCAGGCGCACCGCACTGCTGCAGCATTTCCTCATTCAGCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010286 GO:0010311 GO:0010498 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019941 GO:0022622 GO:0030163 GO:0031146 GO:0031461 GO:0032446 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048527 GO:0048528 GO:0048580 GO:0048581 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051302 GO:0051603 GO:0051716 GO:0051781 GO:0065007 GO:0070647 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901332 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905392 GO:1905393 GO:1990234 GO:2000023 GO:2000026 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko04068 ko04110 ko04120 ko04150 ko05168 ko05169 ko05200 ko05203 ko05222 map04068 map04110 map04120 map04150 map05168 map05169 map05200 map05203 map05222
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

349

Amino Acids

38.0

Weight (kDa)

7.4

Isoelectric Point (pI)

44.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 17 - 52 1.1e-06 F-box-like
DUF7885 PF25372 90 - 259 1.8e-16 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 941
Acc36I ACCTGC 1 cut(s) 941
AciI CCGC 3 cut(s) 420, 657, 1015
AclWI GGATC 1 cut(s) 714
AcoI YGGCCR 1 cut(s) 541
AcuI CTGAAG 1 cut(s) 308
AfiI CCNNNNNNNGG 2 cut(s) 183, 874
AgsI TTSAA 6 cut(s) 281, 352, 452, 481, 899, 973
AjnI CCWGG 3 cut(s) 330, 818, 1005
AloI GAACNNNNNNTCC 2 cut(s) 965, 997
AluBI AGCT 6 cut(s) 70, 119, 348, 355, 383, 1043
AluI AGCT 6 cut(s) 70, 119, 348, 355, 383, 1043
Alw21I GWGCWC 2 cut(s) 72, 875
Alw26I GTCTC 3 cut(s) 176, 400, 668
Alw44I GTGCAC 1 cut(s) 871
AlwI GGATC 1 cut(s) 714
AlwNI CAGNNNCTG 4 cut(s) 85, 122, 331, 568
AoxI GGCC 4 cut(s) 160, 541, 727, 774
ApaLI GTGCAC 1 cut(s) 871
ApeKI GCWGC 4 cut(s) 512, 803, 1022, 1025
AspLEI GCGC 1 cut(s) 1012
AspS9I GGNCC 5 cut(s) 160, 211, 328, 334, 775
AsuHPI GGTGA 3 cut(s) 121, 608, 874
AvaII GGWCC 3 cut(s) 211, 328, 334
BaeGI GKGCMC 1 cut(s) 875
BanII GRGCYC 2 cut(s) 72, 849
Bbv12I GWGCWC 2 cut(s) 72, 875
BbvI GCAGC 4 cut(s) 499, 815, 1009, 1037
BccI CCATC 2 cut(s) 58, 928
BceAI ACGGC 2 cut(s) 528, 891
BciT130I CCWGG 3 cut(s) 332, 820, 1007
BclI TGATCA 2 cut(s) 100, 111
BcoDI GTCTC 3 cut(s) 176, 400, 668
BfmI CTRYAG 3 cut(s) 550, 801, 1023
BfuAI ACCTGC 1 cut(s) 941
BisI GCNGC 5 cut(s) 513, 658, 804, 1023, 1026
BlsI GCNGC 5 cut(s) 514, 659, 805, 1024, 1027
Bme1390I CCNGG 3 cut(s) 332, 820, 1007
Bme18I GGWCC 3 cut(s) 211, 328, 334
BmgT120I GGNCC 5 cut(s) 160, 211, 328, 334, 775
BmrFI CCNGG 3 cut(s) 332, 820, 1007
BmsI GCATC 3 cut(s) 136, 524, 617
BoxI GACNNNNGTC 1 cut(s) 92
BpmI CTGGAG 1 cut(s) 144
Bpu10I CCTNAGC 2 cut(s) 338, 379
BpuEI CTTGAG 1 cut(s) 833
BsaJI CCNNGG 1 cut(s) 724
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 874
Bse1I ACTGG 2 cut(s) 10, 868
Bse3DI GCAATG 5 cut(s) 300, 441, 527, 768, 813
BseBI CCWGG 3 cut(s) 332, 820, 1007
BseDI CCNNGG 1 cut(s) 724
BseGI GGATG 3 cut(s) 506, 632, 980
BseLI CCNNNNNNNGG 2 cut(s) 183, 874
BseMI GCAATG 5 cut(s) 300, 441, 527, 768, 813
BseMII CTCAG 2 cut(s) 652, 707
BseNI ACTGG 2 cut(s) 10, 868
BseSI GKGCMC 1 cut(s) 875
BseXI GCAGC 4 cut(s) 499, 815, 1009, 1037
BshFI GGCC 4 cut(s) 162, 543, 729, 776
BsiHKAI GWGCWC 2 cut(s) 72, 875
BslI CCNNNNNNNGG 2 cut(s) 183, 874
BsmAI GTCTC 3 cut(s) 176, 400, 668
BsmBI CGTCTC 1 cut(s) 176
BsmI GAATGC 1 cut(s) 431
BsnI GGCC 4 cut(s) 162, 543, 729, 776
Bsp1286I GDGCHC 3 cut(s) 72, 849, 875
Bsp143I GATC 4 cut(s) 100, 111, 319, 719
BspACI CCGC 3 cut(s) 420, 657, 1015
BspANI GGCC 4 cut(s) 162, 543, 729, 776
BspCNI CTCAG 2 cut(s) 651, 708
BspHI TCATGA 1 cut(s) 957
BspMAI CTGCAG 3 cut(s) 554, 805, 1027
BspMI ACCTGC 1 cut(s) 941
BspPI GGATC 1 cut(s) 714
BsrDI GCAATG 5 cut(s) 300, 441, 527, 768, 813
BsrI ACTGG 2 cut(s) 10, 868
BssECI CCNNGG 1 cut(s) 724
BssMI GATC 4 cut(s) 100, 111, 319, 719
BssT1I CCWWGG 1 cut(s) 724
Bst2UI CCWGG 3 cut(s) 332, 820, 1007
Bst4CI ACNGT 3 cut(s) 109, 646, 740
BstC8I GCNNGC 2 cut(s) 534, 801
BstDEI CTNAG 5 cut(s) 228, 338, 379, 638, 716
BstF5I GGATG 3 cut(s) 506, 632, 980
BstHHI GCGC 1 cut(s) 1012
BstKTI GATC 4 cut(s) 103, 114, 322, 722
BstMAI GTCTC 3 cut(s) 176, 400, 668
BstMBI GATC 4 cut(s) 100, 111, 319, 719
BstMWI GCNNNNNNNGC 6 cut(s) 76, 533, 549, 853, 899, 1007
BstNI CCWGG 3 cut(s) 332, 820, 1007
BstNSI RCATGY 1 cut(s) 999
BstPAI GACNNNNGTC 1 cut(s) 92
BstSCI CCNGG 3 cut(s) 330, 818, 1005
BstSFI CTRYAG 3 cut(s) 550, 801, 1023
BstSLI GKGCMC 1 cut(s) 875
BstV1I GCAGC 4 cut(s) 499, 815, 1009, 1037
BstX2I RGATCY 1 cut(s) 719
BstYI RGATCY 1 cut(s) 719
BsuRI GGCC 4 cut(s) 162, 543, 729, 776
BtsCI GGATG 3 cut(s) 506, 632, 980
BtsI GCAGTG 4 cut(s) 559, 569, 909, 1017
BtsIMutI CAGTG 7 cut(s) 357, 442, 559, 569, 875, 909, 1017
BveI ACCTGC 1 cut(s) 941
Cac8I GCNNGC 2 cut(s) 534, 801
CaiI CAGNNNCTG 4 cut(s) 85, 122, 331, 568
CciI TCATGA 1 cut(s) 957
CfoI GCGC 1 cut(s) 1012
Cfr13I GGNCC 5 cut(s) 160, 211, 328, 334, 775
CseI GACGC 1 cut(s) 862
CviAII CATG 5 cut(s) 183, 199, 386, 958, 996
DdeI CTNAG 5 cut(s) 228, 338, 379, 638, 716
DpnI GATC 4 cut(s) 102, 113, 321, 721
DpnII GATC 4 cut(s) 100, 111, 319, 719
EaeI YGGCCR 1 cut(s) 541
Ecl136II GAGCTC 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 724
Eco24I GRGCYC 2 cut(s) 72, 849
Eco47I GGWCC 3 cut(s) 211, 328, 334
Eco53kI GAGCTC 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 308
EcoICRI GAGCTC 1 cut(s) 70
EcoO109I RGGNCCY 1 cut(s) 328
EcoRII CCWGG 3 cut(s) 330, 818, 1005
EcoT14I CCWWGG 1 cut(s) 724
EcoT38I GRGCYC 2 cut(s) 72, 849
ErhI CCWWGG 1 cut(s) 724
Esp3I CGTCTC 1 cut(s) 176
FaeI CATG 5 cut(s) 186, 202, 389, 961, 999
FatI CATG 5 cut(s) 182, 198, 385, 957, 995
FauNDI CATATG 1 cut(s) 622
FbaI TGATCA 2 cut(s) 100, 111
Fnu4HI GCNGC 5 cut(s) 513, 658, 804, 1023, 1026
FokI GGATG 3 cut(s) 513, 639, 967
FriOI GRGCYC 2 cut(s) 72, 849
Fsp4HI GCNGC 5 cut(s) 513, 658, 804, 1023, 1026
GlaI GCGC 1 cut(s) 1011
GluI GCNGC 5 cut(s) 513, 658, 804, 1023, 1026
GsuI CTGGAG 1 cut(s) 144
HaeIII GGCC 4 cut(s) 162, 543, 729, 776
HgaI GACGC 1 cut(s) 862
HhaI GCGC 1 cut(s) 1012
Hin1II CATG 5 cut(s) 186, 202, 389, 961, 999
Hin6I GCGC 1 cut(s) 1010
HinP1I GCGC 1 cut(s) 1010
HincII GTYRAC 1 cut(s) 649
HindII GTYRAC 1 cut(s) 649
HindIII AAGCTT 1 cut(s) 346
HinfI GANTC 6 cut(s) 82, 126, 408, 571, 815, 911
HphI GGTGA 3 cut(s) 121, 608, 874
Hpy166II GTNNAC 3 cut(s) 234, 649, 873
Hpy188I TCNGA 8 cut(s) 63, 87, 105, 297, 520, 570, 641, 717
Hpy188III TCNNGA 6 cut(s) 123, 263, 449, 850, 939, 958
Hpy8I GTNNAC 3 cut(s) 234, 649, 873
HpyAV CCTTC 6 cut(s) 23, 27, 46, 836, 897, 936
HpyCH4III ACNGT 3 cut(s) 109, 646, 740
HpyCH4IV ACGT 1 cut(s) 259
HpyF10VI GCNNNNNNNGC 6 cut(s) 76, 533, 549, 853, 899, 1007
HpyF3I CTNAG 5 cut(s) 228, 338, 379, 638, 716
HpySE526I ACGT 1 cut(s) 259
Hsp92II CATG 5 cut(s) 186, 202, 389, 961, 999
HspAI GCGC 1 cut(s) 1010
Ksp22I TGATCA 2 cut(s) 100, 111
Kzo9I GATC 4 cut(s) 100, 111, 319, 719
LmnI GCTCC 3 cut(s) 67, 75, 229
Lsp1109I GCAGC 4 cut(s) 499, 815, 1009, 1037
LweI GCATC 3 cut(s) 136, 524, 617
MaeII ACGT 1 cut(s) 259
MaeIII GTNAC 3 cut(s) 188, 437, 545
MalI GATC 4 cut(s) 102, 113, 321, 721
MboI GATC 4 cut(s) 100, 111, 319, 719
MboII GAAGA 3 cut(s) 293, 314, 802
MflI RGATCY 1 cut(s) 719
MhlI GDGCHC 3 cut(s) 72, 849, 875
MluCI AATT 1 cut(s) 476
MlyI GAGTC 3 cut(s) 135, 402, 905
MmeI TCCRAC 2 cut(s) 119, 583
MnlI CCTC 8 cut(s) 173, 188, 580, 647, 720, 832, 962, 1044
MseI TTAA 1 cut(s) 488
MslI CAYNNNNRTG 1 cut(s) 625
MspA1I CMGCKG 1 cut(s) 420
MspR9I CCNGG 3 cut(s) 332, 820, 1007
Mva1269I GAATGC 1 cut(s) 431
MvaI CCWGG 3 cut(s) 332, 820, 1007
MwoI GCNNNNNNNGC 6 cut(s) 76, 533, 549, 853, 899, 1007
NdeI CATATG 1 cut(s) 622
NdeII GATC 4 cut(s) 100, 111, 319, 719
NlaIII CATG 5 cut(s) 186, 202, 389, 961, 999
NmuCI GTSAC 1 cut(s) 437
NspI RCATGY 1 cut(s) 999
PagI TCATGA 1 cut(s) 957
PaqCI CACCTGC 1 cut(s) 941
PctI GAATGC 1 cut(s) 431
PfeI GAWTC 3 cut(s) 82, 571, 815
PfoI TCCNGGA 2 cut(s) 330, 818
PkrI GCNGC 5 cut(s) 514, 659, 805, 1024, 1027
PleI GAGTC 3 cut(s) 134, 402, 905
PpsI GAGTC 3 cut(s) 134, 402, 905
PpuMI RGGWCCY 1 cut(s) 328
PshAI GACNNNNGTC 1 cut(s) 92
Psp124BI GAGCTC 1 cut(s) 72
Psp5II RGGWCCY 1 cut(s) 328
Psp6I CCWGG 3 cut(s) 330, 818, 1005
PspGI CCWGG 3 cut(s) 330, 818, 1005
PspPI GGNCC 5 cut(s) 160, 211, 328, 334, 775
PspPPI RGGWCCY 1 cut(s) 328
PstI CTGCAG 3 cut(s) 554, 805, 1027
PstNI CAGNNNCTG 4 cut(s) 85, 122, 331, 568
PsuI RGATCY 1 cut(s) 719
RseI CAYNNNNRTG 1 cut(s) 625
SacI GAGCTC 1 cut(s) 72
SaqAI TTAA 1 cut(s) 488
SatI GCNGC 5 cut(s) 513, 658, 804, 1023, 1026
Sau3AI GATC 4 cut(s) 100, 111, 319, 719
Sau96I GGNCC 5 cut(s) 160, 211, 328, 334, 775
SchI GAGTC 3 cut(s) 135, 402, 905
ScrFI CCNGG 3 cut(s) 332, 820, 1007
SduI GDGCHC 3 cut(s) 72, 849, 875
SfaNI GCATC 3 cut(s) 136, 524, 617
SfcI CTRYAG 3 cut(s) 550, 801, 1023
SinI GGWCC 3 cut(s) 211, 328, 334
SmiMI CAYNNNNRTG 1 cut(s) 625
SmlI CTYRAG 1 cut(s) 848
SmoI CTYRAG 1 cut(s) 848
Sse9I AATT 1 cut(s) 476
SsiI CCGC 3 cut(s) 420, 657, 1015
SstI GAGCTC 1 cut(s) 72
StyD4I CCNGG 3 cut(s) 330, 818, 1005
StyI CCWWGG 1 cut(s) 724
TaaI ACNGT 3 cut(s) 109, 646, 740
TaiI ACGT 1 cut(s) 262
TaqI TCGA 1 cut(s) 96
TasI AATT 1 cut(s) 476
TauI GCSGC 1 cut(s) 660
TfiI GAWTC 3 cut(s) 82, 571, 815
Tru1I TTAA 1 cut(s) 488
Tru9I TTAA 1 cut(s) 488
TscAI CASTG 7 cut(s) 364, 442, 559, 569, 875, 909, 1024
TseFI GTSAC 1 cut(s) 437
TseI GCWGC 4 cut(s) 512, 803, 1022, 1025
Tsp45I GTSAC 1 cut(s) 437
TspDTI ATGAA 1 cut(s) 215
TspGWI ACGGA 1 cut(s) 973
TspRI CASTG 7 cut(s) 364, 442, 559, 569, 875, 909, 1024
VneI GTGCAC 1 cut(s) 871
VpaK11BI GGWCC 3 cut(s) 211, 328, 334
XceI RCATGY 1 cut(s) 999
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.